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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914352
Clone id YMU001_000057_H11
Library
Length 536
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000057_H11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTTTTTTTTCGCATCAAACAATTAACTTAATCAAAGGTTACATCTTCGGGCTTCATCTTG
AACAAAAACTCAAAAATGTTAGCTACTTATCCCACCTAGCACCCGCTTTTATCTTCATAC
AGTGGCAGCATAAACTTCGAGATCCTCACTGATGTCATGTGCTGCTCTATTACCTTGCTC
TTGGGCTGAGTTGCTGCCTCCATAGCGTGTGGCGACCAAACCTACATTTAAGCCATGCTC
ATTGAGCAAAGAGACAAAGGCAGGATCGACACATGCTTGATTCCAATCAGCCTTGACTTC
CACATTAGCGCCTTTGGCTACATTTCTCGCCCTCTTGCGACATTGCTCGACCATCTTTCG
TATCAAAACCTTGTCGAATGTAGCCAGTGTGGCCTGAAGTGTAGTCAATGTGTCCTGAAT
TGTAGTCACTGTAGTCCTCAAATCTGCCAACTCGGCTTCTTGTGTAGCAACCCTGCGCTC
TAAGCCTGCCACTTTCTCCTGAAGGGTTAGGTTCTCTATCTTTAAGCGCTTGTTCT
■■Homology search results ■■ -
sp_hit_id P51592
Definition sp|P51592|HYD_DROME E3 ubiquitin-protein ligase hyd OS=Drosophila melanogaster
Align length 39
Score (bit) 32.0
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914352|Adiantum capillus-veneris mRNA, clone:
YMU001_000057_H11.
         (536 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P51592|HYD_DROME E3 ubiquitin-protein ligase hyd OS=Drosophil...    32   1.9  
sp|P97779|HMMR_RAT Hyaluronan-mediated motility receptor OS=Ratt...    32   1.9  
sp|Q9HGI6|ERF3_DEBHA Eukaryotic peptide chain release factor GTP...    31   3.3  
sp|Q00078|KPC1_ASPNG Protein kinase C-like OS=Aspergillus niger ...    30   7.4  
sp|Q2LTQ4|RRF_SYNAS Ribosome-recycling factor OS=Syntrophus acid...    30   9.7  
sp|P30771|NAM7_YEAST ATP-dependent helicase NAM7 OS=Saccharomyce...    30   9.7  
sp|Q00547|HMMR_MOUSE Hyaluronan mediated motility receptor OS=Mu...    30   9.7  
sp|P20730|CHHB2_BOMMO Chorion class high-cysteine HCB protein 13...    30   9.7  
sp|Q84WW6|ASHH1_ARATH Histone-lysine N-methyltransferase ASHH1 O...    30   9.7  

>sp|P51592|HYD_DROME E3 ubiquitin-protein ligase hyd OS=Drosophila
            melanogaster GN=hyd PE=1 SV=3
          Length = 2885

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +1

Query: 349  DHLSYQNLVECSQCGLKCSQCVLNCSHCSPQICQLGFLC 465
            DH++ QN+ EC  CGL  S C   C+ C+ ++C  G  C
Sbjct: 1227 DHIN-QNIFECKTCGLTGSLCC--CTECA-RVCHKGHDC 1261


>sp|P97779|HMMR_RAT Hyaluronan-mediated motility receptor OS=Rattus
           norvegicus GN=Hmmr PE=2 SV=1
          Length = 498

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 15/26 (57%), Positives = 20/26 (76%)
 Frame = -3

Query: 525 LKIENLTLQEKVAGLERRVATQEAEL 448
           LK+ENLTLQEKVA  E+RV   + ++
Sbjct: 258 LKLENLTLQEKVAMAEKRVEDVQQQI 283


>sp|Q9HGI6|ERF3_DEBHA Eukaryotic peptide chain release factor
           GTP-binding subunit OS=Debaryomyces hansenii GN=SUP35
           PE=3 SV=4
          Length = 701

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
 Frame = -2

Query: 505 PSGESGRLRAQGCYTRSRVGRFEDYS-----DYNSGHIDYTSGHTGY 380
           PSG+ G    QG Y     G +++YS     +YN G+ +Y  G+ GY
Sbjct: 53  PSGQQGGY--QGGYQGGYQGGYQNYSQGGYQNYNQGYQNYNQGYQGY 97


>sp|Q00078|KPC1_ASPNG Protein kinase C-like OS=Aspergillus niger
           GN=pkcA PE=3 SV=1
          Length = 1096

 Score = 30.0 bits (66), Expect = 7.4
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +1

Query: 364 QNLVECSQCGLKCSQCVLNCSHCSPQICQLGFLCSNPAL 480
           +N   C++CGL C     +C+H  P  C +    +N  L
Sbjct: 553 KNAKRCTECGLTCHS---HCTHLVPDFCGMSMEAANQIL 588


>sp|Q2LTQ4|RRF_SYNAS Ribosome-recycling factor OS=Syntrophus
           aciditrophicus (strain SB) GN=frr PE=3 SV=1
          Length = 185

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -3

Query: 366 LIRKMVEQCRKRARNVAKGANVEVKA 289
           ++RKM E+C+ + RN  + AN E K+
Sbjct: 116 VVRKMAEECKVKLRNARRDANEEFKS 141


>sp|P30771|NAM7_YEAST ATP-dependent helicase NAM7 OS=Saccharomyces
           cerevisiae GN=NAM7 PE=1 SV=1
          Length = 971

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 379 CSQCGLKCSQCVLNCSHCSPQIC 447
           C+ CG+  ++CV+ C+ C    C
Sbjct: 62  CAYCGIDSAKCVIKCNSCKKWFC 84


>sp|Q00547|HMMR_MOUSE Hyaluronan mediated motility receptor OS=Mus
           musculus GN=Hmmr PE=1 SV=3
          Length = 794

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 14/26 (53%), Positives = 19/26 (73%)
 Frame = -3

Query: 525 LKIENLTLQEKVAGLERRVATQEAEL 448
           LK+ENLTLQEKVA  E+ V   + ++
Sbjct: 557 LKLENLTLQEKVAMAEKSVEDVQQQI 582


>sp|P20730|CHHB2_BOMMO Chorion class high-cysteine HCB protein 13
           OS=Bombyx mori PE=3 SV=1
          Length = 178

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = +1

Query: 388 CGLKCSQCVLNCSHCSPQICQLGFLCSNPA 477
           CG  C  C   C  C  + C    LCSN A
Sbjct: 24  CGCCCRGCGCGCGGCGSRCCDRFCLCSNSA 53


>sp|Q84WW6|ASHH1_ARATH Histone-lysine N-methyltransferase ASHH1
           OS=Arabidopsis thaliana GN=ASHH1 PE=2 SV=1
          Length = 492

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +1

Query: 382 SQCGLKCSQCVLNCSHCSPQICQLGFLCSNPAL*ACHF 495
           S CG +C   + N + C+P  C  G  C N     C +
Sbjct: 52  SACGERCLNVITN-TECTPGYCPCGVYCKNQKFQKCEY 88
tr_hit_id B0EQV2
Definition tr|B0EQV2|B0EQV2_ENTDI Putative uncharacterized protein OS=Entamoeba dispar SAW760
Align length 62
Score (bit) 36.2
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914352|Adiantum capillus-veneris mRNA, clone:
YMU001_000057_H11.
         (536 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B0EQV2|B0EQV2_ENTDI Putative uncharacterized protein OS=Entam...    36   1.1  
tr|B0EC32|B0EC32_ENTDI Protein serine/threonine kinase, putative...    36   1.1  
tr|B0E9J2|B0E9J2_ENTDI Putative uncharacterized protein OS=Entam...    36   1.1  
tr|A0CSZ2|A0CSZ2_PARTE Chromosome undetermined scaffold_261, who...    35   2.5  
tr|Q23C50|Q23C50_TETTH Putative uncharacterized protein OS=Tetra...    34   4.2  
tr|Q6XMY3|Q6XMY3_RHOER Putative transposase OS=Rhodococcus eryth...    34   5.5  
tr|A0DX80|A0DX80_PARTE Chromosome undetermined scaffold_68, whol...    34   5.5  
tr|Q1E4H2|Q1E4H2_COCIM Putative uncharacterized protein OS=Cocci...    34   5.5  
tr|B8MEC3|B8MEC3_9EURO Putative uncharacterized protein OS=Talar...    34   5.5  
tr|B7Q4L0|B7Q4L0_IXOSC Putative uncharacterized protein OS=Ixode...    33   7.2  
tr|A0DKY1|A0DKY1_PARTE Chromosome undetermined scaffold_55, whol...    33   7.2  
tr|Q8DJR3|Q8DJR3_THEEB AcrB/AcrD/AcrF family protein OS=Thermosy...    33   9.3  
tr|Q1NDW1|Q1NDW1_9SPHN D-alanyl-D-alanine carboxypeptidase OS=Sp...    33   9.3  
tr|A0CRY6|A0CRY6_PARTE Chromosome undetermined scaffold_254, who...    33   9.3  
tr|A0CAA5|A0CAA5_PARTE Chromosome undetermined scaffold_160, who...    33   9.3  
tr|Q5KKH8|Q5KKH8_CRYNE ATP dependent helicase, putative OS=Crypt...    33   9.3  
tr|Q55VR1|Q55VR1_CRYNE Putative uncharacterized protein OS=Crypt...    33   9.3  
tr|Q0CHV2|Q0CHV2_ASPTN Putative uncharacterized protein OS=Asper...    33   9.3  

>tr|B0EQV2|B0EQV2_ENTDI Putative uncharacterized protein
           OS=Entamoeba dispar SAW760 GN=EDI_084240 PE=4 SV=1
          Length = 571

 Score = 36.2 bits (82), Expect = 1.1
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 12/62 (19%)
 Frame = +1

Query: 322 ISRPLATLLDHLSYQNLVECSQCG--------LKCSQCVLNCSHC----SPQICQLGFLC 465
           + R + +L+ H   +  V C +C         L C  C+ NC HC    + Q C  G++ 
Sbjct: 242 LKRSINSLIPHCEKETTVGCQRCDNKYYLTNTLMCEHCIENCEHCIDSTTCQKCSTGYIL 301

Query: 466 SN 471
           +N
Sbjct: 302 NN 303


>tr|B0EC32|B0EC32_ENTDI Protein serine/threonine kinase, putative
            OS=Entamoeba dispar SAW760 GN=EDI_199740 PE=4 SV=1
          Length = 1695

 Score = 36.2 bits (82), Expect = 1.1
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 12/62 (19%)
 Frame = +1

Query: 322  ISRPLATLLDHLSYQNLVECSQCG--------LKCSQCVLNCSHC----SPQICQLGFLC 465
            + R + +L+ H   +  V C +C         L C  C+ NC HC    + Q C  G++ 
Sbjct: 1027 LKRSMNSLIPHCKKETTVGCQRCDNKYYLTNTLMCEHCIENCEHCIDSTTCQKCSAGYIL 1086

Query: 466  SN 471
            +N
Sbjct: 1087 NN 1088


>tr|B0E9J2|B0E9J2_ENTDI Putative uncharacterized protein
           OS=Entamoeba dispar SAW760 GN=EDI_130760 PE=4 SV=1
          Length = 706

 Score = 36.2 bits (82), Expect = 1.1
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 12/62 (19%)
 Frame = +1

Query: 322 ISRPLATLLDHLSYQNLVECSQCG--------LKCSQCVLNCSHC----SPQICQLGFLC 465
           + R + +L+ H   +  V C +C         L C  C+ NC HC    + Q C  G++ 
Sbjct: 591 LKRSINSLIPHCKKETTVGCQRCDNKYYLTNTLMCEHCIENCEHCIDSTTCQKCSAGYIL 650

Query: 466 SN 471
           +N
Sbjct: 651 NN 652


>tr|A0CSZ2|A0CSZ2_PARTE Chromosome undetermined scaffold_261, whole
            genome shotgun sequence OS=Paramecium tetraurelia
            GN=GSPATT00038927001 PE=4 SV=1
          Length = 3013

 Score = 35.0 bits (79), Expect = 2.5
 Identities = 24/73 (32%), Positives = 33/73 (45%)
 Frame = +1

Query: 247  QRDKGRIDTCLIPISLDFHISAFGYISRPLATLLDHLSYQNLVECSQCGLKCSQCVLNCS 426
            Q  K    T  +P+S    +++FG    P  T    +  Q    CS   L+CS    NC+
Sbjct: 796  QGSKSNQCTSCVPLSKR-QLNSFGECKCP--TSYFDIGLQECFICSSDCLECSITATNCT 852

Query: 427  HCSPQICQLGFLC 465
             CSP+  QLG  C
Sbjct: 853  SCSPERYQLGNSC 865


>tr|Q23C50|Q23C50_TETTH Putative uncharacterized protein
           OS=Tetrahymena thermophila SB210 GN=TTHERM_00222350 PE=4
           SV=1
          Length = 1034

 Score = 34.3 bits (77), Expect = 4.2
 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
 Frame = +1

Query: 367 NLVECSQCGLKCSQCVLNCSHCSPQI-----CQLGFLCSN 471
           N + C Q  L C  C LNC +CS  I     CQLG+   N
Sbjct: 645 NGIYCDQTSLICVDCDLNCFNCSKNIKQCTECQLGYYLYN 684


>tr|Q6XMY3|Q6XMY3_RHOER Putative transposase OS=Rhodococcus
           erythropolis GN=PBD2.163 PE=4 SV=1
          Length = 175

 Score = 33.9 bits (76), Expect = 5.5
 Identities = 25/63 (39%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = +1

Query: 67  NSKMLATYPT*HPLLSSYSG-SINFEILTDVMCCSITLLLG*VAASIACGDQTYI*AMLI 243
           N K LA  P  H L  S  G S     LTD  CC +TLLL    A    GD  Y+  +L 
Sbjct: 9   NDKNLANEPADHALGRSRGGLSTKIHALTDTFCCPLTLLLSPGQA----GDNPYLAPLLD 64

Query: 244 EQR 252
             R
Sbjct: 65  AHR 67


>tr|A0DX80|A0DX80_PARTE Chromosome undetermined scaffold_68, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00021279001 PE=4 SV=1
          Length = 5873

 Score = 33.9 bits (76), Expect = 5.5
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +1

Query: 361 YQNLVECSQCGLKCSQCVLNCSHCSPQICQLGFLCSNPAL*AC 489
           Y N + C QC L C+ C ++ ++CS   CQ+G+   N     C
Sbjct: 509 YLNDLICEQCDLNCTLCDISPANCSD--CQIGYYLDNTTCKDC 549



 Score = 33.9 bits (76), Expect = 5.5
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +1

Query: 361  YQNLVECSQCGLKCSQCVLNCSHCSPQICQLGFLCSNPAL*AC 489
            Y N + C QC L C+ C ++ ++CS   CQ+G+   N     C
Sbjct: 1094 YLNDLICEQCDLNCTLCDISPANCSD--CQIGYYLDNTTCKDC 1134


>tr|Q1E4H2|Q1E4H2_COCIM Putative uncharacterized protein
           OS=Coccidioides immitis GN=CIMG_02541 PE=4 SV=1
          Length = 300

 Score = 33.9 bits (76), Expect = 5.5
 Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 8/62 (12%)
 Frame = -2

Query: 517 REPNPSGESGRLRAQGCYTRSRVGRFE----DYSDYNSGHIDYTS----GHTGYIRQGFD 362
           RE    GESG  R Q CY   +VG        YS YN G  +  S    G TG++ +   
Sbjct: 217 RECPQGGESGEARGQECYKCGQVGHISRNCGQYSGYNGGGYNAGSYRYGGETGHVSRDCT 276

Query: 361 TK 356
           T+
Sbjct: 277 TE 278


>tr|B8MEC3|B8MEC3_9EURO Putative uncharacterized protein
            OS=Talaromyces stipitatus ATCC 10500 GN=TSTA_016290 PE=4
            SV=1
          Length = 1405

 Score = 33.9 bits (76), Expect = 5.5
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +1

Query: 370  LVECSQCGLK-CSQCVLNCSHCSPQICQLGFLCSN 471
            L EC+ C +  C  CV N   CS   C++ +LC N
Sbjct: 1232 LRECTNCSINVCQDCVNNNPPCSCSYCEVNYLCPN 1266


>tr|B7Q4L0|B7Q4L0_IXOSC Putative uncharacterized protein OS=Ixodes
            scapularis GN=IscW_ISCW021822 PE=4 SV=1
          Length = 1851

 Score = 33.5 bits (75), Expect = 7.2
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +1

Query: 349  DHLSYQNLVECSQCGLKCSQ-CVLNCSHCSPQICQLGFLCSN 471
            DHL  +  VEC  CG K  Q CVL+  +  P+    GF C N
Sbjct: 1241 DHLELEPFVECLDCGRKLHQVCVLHFDNIWPE----GFTCEN 1278