BP914361
Clone id YMU001_000058_A09
Library
Length 523
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000058_A09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
GTGACGCAAGCAGTAAACAACAATCCAGGCGGGGATCTCGCCACTAAAAGAGTGCACACA
ACACAAAATAGTGCTGGTATGCATAACCGTGACGCATACTCCCACTATAGATGTGTAGAC
TGCAGCAAAAAACTGCTTGCTGTACAATACCCAAGGCTTTGGTGTGTCGGGCCACATACC
TATATGGCCATCCTTGGCCTCATGAAATCCCGTGTGGACTCCACGTCCGAGCTGTGTATA
CATGGTATGCTCTACGCACCTATCCGTGCATGCCATACGTGCTCCATGGTCTCGATACTG
TAGATGACGTGAGACCATATCGCCTCGAAATATCTCTGATGTCTGGCTCTTATTCCATAG
ATCGCCCGTTTGTGTTGATGCGATAGGCTATAACTGGGGGCTCTCCGTCGCCGACGCTCT
ATGAAATCCTCTGCTCTAGCATGGGTGGCTCGCACCGCACCCTGGTGAGATACCATCTGT
GTCGGGCAAAAAAACTGCGTATGCCTCCTCTGTCCGATATGGT
■■Homology search results ■■ -
sp_hit_id Q02330
Definition sp|Q02330|SMA2_CAEEL Dwarfin sma-2 OS=Caenorhabditis elegans
Align length 67
Score (bit) 36.2
E-value 0.096
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914361|Adiantum capillus-veneris mRNA, clone:
YMU001_000058_A09.
(523 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q02330|SMA2_CAEEL Dwarfin sma-2 OS=Caenorhabditis elegans GN=... 36 0.096
sp|Q0VMV4|SURA_ALCBS Chaperone surA OS=Alcanivorax borkumensis (... 33 1.1
sp|Q8U1N9|MRE11_PYRFU DNA double-strand break repair protein mre... 31 3.1
sp|Q9QYC5|ETBR2_RAT Endothelin B receptor-like protein 2 OS=Ratt... 31 4.0
sp|Q99JG2|ETBR2_MOUSE Endothelin B receptor-like protein 2 OS=Mu... 31 4.0
sp|O60883|ETBR2_HUMAN Endothelin B receptor-like protein 2 OS=Ho... 31 4.0
sp|O15354|GPR37_HUMAN Probable G-protein coupled receptor 37 OS=... 30 5.3
sp|Q3ALY0|UCRI_SYNSC Cytochrome b6-f complex iron-sulfur subunit... 30 7.0
sp|Q93075|TATD2_HUMAN Putative deoxyribonuclease TATDN2 OS=Homo ... 30 7.0
sp|P61651|ORN_MYCPA Oligoribonuclease OS=Mycobacterium paratuber... 30 7.0
sp|O15018|PDZD2_HUMAN PDZ domain-containing protein 2 OS=Homo sa... 30 9.0
sp|Q6MFP4|EIF3G_NEUCR Eukaryotic translation initiation factor 3... 30 9.1

>sp|Q02330|SMA2_CAEEL Dwarfin sma-2 OS=Caenorhabditis elegans
GN=sma-2 PE=1 SV=2
Length = 418

Score = 36.2 bits (82), Expect = 0.096
Identities = 23/67 (34%), Positives = 32/67 (47%)
Frame = +3

Query: 114 CRLQQKTACCTIPKALVCRATYLYGHPWPHEIPCGLHVRAVYTWYALRTYPCMPYVLHGL 293
C+ QQKT C TIP++L R + PH I C VY W L+++ H L
Sbjct: 54 CQGQQKTECVTIPRSLDGRLQISHRKALPHVIYC-----RVYRWPDLQSH-------HEL 101

Query: 294 DTVDDVR 314
++D R
Sbjct: 102 KAIEDCR 108


>sp|Q0VMV4|SURA_ALCBS Chaperone surA OS=Alcanivorax borkumensis
(strain SK2 / ATCC 700651 / DSM 11573) GN=surA PE=3 SV=1
Length = 435

Score = 32.7 bits (73), Expect = 1.1
Identities = 19/53 (35%), Positives = 30/53 (56%)
Frame = -2

Query: 381 ASTQTGDLWNKSQTSEIFRGDMVSRHLQYRDHGARMACTDRCVEHTMYTQLGR 223
A+T D ++ +Q E R DMV LQ R +R+ TDR V+ + ++LG+
Sbjct: 124 AATLREDGYSWTQFREQIRQDMVISRLQQRSVASRIQITDREVDRFLSSELGK 176


>sp|Q8U1N9|MRE11_PYRFU DNA double-strand break repair protein mre11
OS=Pyrococcus furiosus GN=mre11 PE=1 SV=2
Length = 426

Score = 31.2 bits (69), Expect = 3.1
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 7/51 (13%)
Frame = -3

Query: 497 QFFCPTQ---MVSHQGAVRATHARAEDFIEXXXXRAPS----YSLSHQHKR 366
+ F PT ++ HQG + AR ED+ E P Y+L H HKR
Sbjct: 160 RLFRPTDNAILMLHQGVREVSEARGEDYFEIGLGDLPEGYLYYALGHIHKR 210


>sp|Q9QYC5|ETBR2_RAT Endothelin B receptor-like protein 2 OS=Rattus
norvegicus GN=Gpr37l1 PE=2 SV=1
Length = 481

Score = 30.8 bits (68), Expect = 4.0
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -3

Query: 122 QSTHL*WEYASRLCIPALFCVVCTLLV--ARSPPG 24
Q+ + W + C+P LF V C L+ R PPG
Sbjct: 306 QNARMWWYFGCYFCLPILFTVTCQLVTWRVRGPPG 340


>sp|Q99JG2|ETBR2_MOUSE Endothelin B receptor-like protein 2 OS=Mus
musculus GN=Gpr37l1 PE=1 SV=2
Length = 481

Score = 30.8 bits (68), Expect = 4.0
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -3

Query: 122 QSTHL*WEYASRLCIPALFCVVCTLLV--ARSPPG 24
Q+ + W + C+P LF V C L+ R PPG
Sbjct: 306 QNARMWWYFGCYFCLPILFTVTCQLVTWRVRGPPG 340


>sp|O60883|ETBR2_HUMAN Endothelin B receptor-like protein 2 OS=Homo
sapiens GN=GPR37L1 PE=2 SV=1
Length = 481

Score = 30.8 bits (68), Expect = 4.0
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -3

Query: 122 QSTHL*WEYASRLCIPALFCVVCTLLV--ARSPPG 24
Q+ + W + C+P LF V C L+ R PPG
Sbjct: 306 QNARMWWYFGCYFCLPILFTVTCQLVTWRVRGPPG 340


>sp|O15354|GPR37_HUMAN Probable G-protein coupled receptor 37
OS=Homo sapiens GN=GPR37 PE=1 SV=2
Length = 613

Score = 30.4 bits (67), Expect = 5.3
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -3

Query: 119 STHL*WEYASRLCIPALFCVVCTLLVAR 36
S L W + C+P LF + C+L+ AR
Sbjct: 440 SARLWWYFGCYFCLPTLFTITCSLVTAR 467


>sp|Q3ALY0|UCRI_SYNSC Cytochrome b6-f complex iron-sulfur subunit
OS=Synechococcus sp. (strain CC9605) GN=petC PE=3 SV=1
Length = 178

Score = 30.0 bits (66), Expect = 7.0
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +2

Query: 380 AIGYNWGLSVADAL*NPLL*HGWLAPHP-GEIPSVSGKK 493
A G G S D L NP+ GWL+ HP G+ V G K
Sbjct: 46 AAGSGGGTSAKDELGNPITASGWLSSHPEGDRSLVQGLK 84


>sp|Q93075|TATD2_HUMAN Putative deoxyribonuclease TATDN2 OS=Homo
sapiens GN=TATDN2 PE=1 SV=2
Length = 761

Score = 30.0 bits (66), Expect = 7.0
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +2

Query: 122 AAKNCLLYNTQGFGVSGHIPIWPSLAS 202
A+K CL+ NT+GF SG P+ P+ AS
Sbjct: 97 ASKGCLIRNTRGFLSSGGSPLRPANAS 123


>sp|P61651|ORN_MYCPA Oligoribonuclease OS=Mycobacterium
paratuberculosis GN=orn PE=3 SV=1
Length = 215

Score = 30.0 bits (66), Expect = 7.0
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +1

Query: 28 GGDLATKRVHTTQNSAGMHNRDAYSHYRCVDCS--KKLLAVQYPRLW 162
G +AT R ++ + DAY HYR +D S K+L YPR++
Sbjct: 104 GNSIATDRAFIVRDMPAL---DAYLHYRMIDVSSIKELCRRWYPRIY 147


tr_hit_id A8X3D3
Definition tr|A8X3D3|A8X3D3_CAEBR CBR-SMA-2 protein (Fragment) OS=Caenorhabditis briggsae
Align length 67
Score (bit) 36.2
E-value 1.0
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914361|Adiantum capillus-veneris mRNA, clone:
YMU001_000058_A09.
(523 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A8X3D3|A8X3D3_CAEBR CBR-SMA-2 protein (Fragment) OS=Caenorhab... 36 1.00
tr|A8Q7L1|A8Q7L1_BRUMA MH2 domain containing protein OS=Brugia m... 35 2.9
tr|Q3J5K0|Q3J5K0_RHOS4 Phosphoenolpyruvate--protein phosphotrans... 34 3.8
tr|A3PGT3|A3PGT3_RHOS1 Phosphoenolpyruvate--protein phosphotrans... 34 3.8
tr|B4E6E7|B4E6E7_BURCJ Putative transposase OS=Burkholderia cepa... 34 5.1
tr|B4GTQ4|B4GTQ4_DROPE GL14398 OS=Drosophila persimilis GN=GL143... 33 6.6
tr|A5L0A0|A5L0A0_9GAMM Mating pair stabilization protein OS=Vibr... 33 8.5

>tr|A8X3D3|A8X3D3_CAEBR CBR-SMA-2 protein (Fragment)
OS=Caenorhabditis briggsae GN=Cbr-sma-2 PE=4 SV=1
Length = 399

Score = 36.2 bits (82), Expect = 1.00
Identities = 23/67 (34%), Positives = 32/67 (47%)
Frame = +3

Query: 114 CRLQQKTACCTIPKALVCRATYLYGHPWPHEIPCGLHVRAVYTWYALRTYPCMPYVLHGL 293
C+ QQKT C TIP++L R + PH I C VY W L+++ H L
Sbjct: 35 CQGQQKTECVTIPRSLDGRLQISHRKALPHVIYC-----RVYRWPDLQSH-------HEL 82

Query: 294 DTVDDVR 314
++D R
Sbjct: 83 KAIEDCR 89


>tr|A8Q7L1|A8Q7L1_BRUMA MH2 domain containing protein OS=Brugia
malayi GN=Bm1_45525 PE=4 SV=1
Length = 410

Score = 34.7 bits (78), Expect = 2.9
Identities = 22/67 (32%), Positives = 32/67 (47%)
Frame = +3

Query: 114 CRLQQKTACCTIPKALVCRATYLYGHPWPHEIPCGLHVRAVYTWYALRTYPCMPYVLHGL 293
C+ +Q+T C TIP++L R + PH I C VY W L+++ H L
Sbjct: 78 CQGRQRTDCVTIPRSLDGRLQISHRKALPHVIYC-----RVYRWPDLQSH-------HEL 125

Query: 294 DTVDDVR 314
+DD R
Sbjct: 126 KAIDDCR 132


>tr|Q3J5K0|Q3J5K0_RHOS4 Phosphoenolpyruvate--protein
phosphotransferase OS=Rhodobacter sphaeroides (strain
ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=fruB PE=4
SV=1
Length = 838

Score = 34.3 bits (77), Expect = 3.8
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +3

Query: 195 WPHEIPCGLHVRAVYTWY-ALRTYPCMPYVLHGLDTVDDVRPYRLEISLMS 344
W + P GLH R W A R +PC + HG +T D R ISL+S
Sbjct: 168 WVLDYPTGLHARPATEWAEAARRFPCRIRIRHGAETAD----ARNMISLLS 214


>tr|A3PGT3|A3PGT3_RHOS1 Phosphoenolpyruvate--protein
phosphotransferase OS=Rhodobacter sphaeroides (strain
ATCC 17029 / ATH 2.4.9) GN=Rsph17029_0433 PE=4 SV=1
Length = 838

Score = 34.3 bits (77), Expect = 3.8
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +3

Query: 195 WPHEIPCGLHVRAVYTWY-ALRTYPCMPYVLHGLDTVDDVRPYRLEISLMS 344
W + P GLH R W A R +PC + HG +T D R ISL+S
Sbjct: 168 WVLDYPTGLHARPATEWAEAARRFPCRIRIRHGAETAD----ARNMISLLS 214


>tr|B4E6E7|B4E6E7_BURCJ Putative transposase OS=Burkholderia cepacia
(strain J2315 / LMG 16656) GN=BceJ2315_00440 PE=4 SV=1
Length = 174

Score = 33.9 bits (76), Expect = 5.1
Identities = 18/37 (48%), Positives = 26/37 (70%), Gaps = 2/37 (5%)
Frame = -1

Query: 340 IRDISRRYGLTSSTVSRPWSTYGMHG--*VRRAYHVY 236
IR ++R +GL+ STVS+ ++TY HG VRR Y+ Y
Sbjct: 22 IRAVARTHGLSHSTVSQWYATYQAHGKDGVRRKYNSY 58


>tr|B4GTQ4|B4GTQ4_DROPE GL14398 OS=Drosophila persimilis GN=GL14398
PE=4 SV=1
Length = 455

Score = 33.5 bits (75), Expect = 6.6
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +1

Query: 40 ATKRVHTTQNSAGMHNRDAYSHYRCVDCSKKLLAVQYPRL 159
ATK +H T+ + G+HN A+ H C+ K + +++ ++
Sbjct: 344 ATKCLHDTRFAVGLHNHFAFYHTEAASCAAKSVPIEFAQM 383


>tr|A5L0A0|A5L0A0_9GAMM Mating pair stabilization protein
OS=Vibrionales bacterium SWAT-3 GN=VSWAT3_21840 PE=4
SV=1
Length = 520

Score = 33.1 bits (74), Expect = 8.5
Identities = 17/47 (36%), Positives = 20/47 (42%)
Frame = +3

Query: 183 YGHPWPHEIPCGLHVRAVYTWYALRTYPCMPYVLHGLDTVDDVRPYR 323
Y W + CGL A Y W R YP Y L L D+V +R
Sbjct: 201 YVRQWGGDRVCGLPDIATYLWDGKRVYPSQGYTLGALKKTDNVGCHR 247