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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914371
Clone id YMU001_000058_B08
Library
Length 508
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000058_B08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CGAAGATGCAGCTTTTGAAGGCACCTTCATCGCCCACAACCGCTTTCCGCTCAAGCAAGT
ATCTCTCGCGCTGTTTCTGCTCACCTCTGGCACCCTCTTCCTCATTCTCGGCCTCGTCCT
CCTTTTTCGTACTCATCACAAGCCGCAAGGGTTTGTCTTCACTCTCTTTGCAATGTGGGC
TTGCTTTTCTCGGATTCTACTACACAAGGATTGCATATTATGCATACAGAGGATACAAGA
ATTTCACATTCACAGAGATGTCGAACGTGTGACCCACAATGGATATGTGGTTTATGCAGT
CTGATTAGCCTAAGCATAAACCTTGTACTGGCTATTGAGCTGCTTTCCACACCACTCTTT
TTGAAAAAACGTAGTTGTGATAGTGTTCCTCGGGGCCCGTAGCAGAACATGGGGTCTACT
GAATCCTTATACATGAATATATTTACGATGTATGTCAAGGTAAAACTGATGAAAACAAAG
TTCTTGACTATCTCAGGTTGTGTGTGTG
■■Homology search results ■■ -
sp_hit_id Q5BJP5
Definition sp|Q5BJP5|CT030_RAT UPF0414 transmembrane protein C20orf30 homolog OS=Rattus norvegicus
Align length 28
Score (bit) 34.3
E-value 0.34
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914371|Adiantum capillus-veneris mRNA, clone:
YMU001_000058_B08.
         (508 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5BJP5|CT030_RAT UPF0414 transmembrane protein C20orf30 homol...    34   0.34 
sp|Q5R8X3|CT030_PONAB UPF0414 transmembrane protein C20orf30 hom...    34   0.34 
sp|Q8CIB6|CT030_MOUSE UPF0414 transmembrane protein C20orf30 hom...    34   0.34 
sp|Q96A57|CT030_HUMAN UPF0414 transmembrane protein C20orf30 OS=...    34   0.34 
sp|Q5ZLH4|CT030_CHICK UPF0414 transmembrane protein C20orf30 hom...    34   0.34 
sp|Q5E975|CT030_BOVIN UPF0414 transmembrane protein C20orf30 hom...    34   0.34 
sp|Q9T1S7|VP21_BPAPS Putative protein p21 OS=Acyrthosiphon pisum...    30   6.5  
sp|Q9Y485|DMXL1_HUMAN DmX-like protein 1 OS=Homo sapiens GN=DMXL...    30   8.6  

>sp|Q5BJP5|CT030_RAT UPF0414 transmembrane protein C20orf30 homolog
           OS=Rattus norvegicus PE=2 SV=1
          Length = 120

 Score = 34.3 bits (77), Expect = 0.34
 Identities = 14/28 (50%), Positives = 22/28 (78%), Gaps = 1/28 (3%)
 Frame = +3

Query: 180 LAFL-GFYYTRIAYYAYRGYKNFTFTEM 260
           L FL GFY+ RIAYYA +GY+ +++ ++
Sbjct: 88  LVFLPGFYHLRIAYYASKGYRGYSYDDI 115


>sp|Q5R8X3|CT030_PONAB UPF0414 transmembrane protein C20orf30
           homolog OS=Pongo abelii PE=2 SV=1
          Length = 120

 Score = 34.3 bits (77), Expect = 0.34
 Identities = 14/28 (50%), Positives = 22/28 (78%), Gaps = 1/28 (3%)
 Frame = +3

Query: 180 LAFL-GFYYTRIAYYAYRGYKNFTFTEM 260
           L FL GFY+ RIAYYA +GY+ +++ ++
Sbjct: 88  LVFLPGFYHLRIAYYASKGYRGYSYDDI 115


>sp|Q8CIB6|CT030_MOUSE UPF0414 transmembrane protein C20orf30
           homolog OS=Mus musculus PE=1 SV=1
          Length = 120

 Score = 34.3 bits (77), Expect = 0.34
 Identities = 14/28 (50%), Positives = 22/28 (78%), Gaps = 1/28 (3%)
 Frame = +3

Query: 180 LAFL-GFYYTRIAYYAYRGYKNFTFTEM 260
           L FL GFY+ RIAYYA +GY+ +++ ++
Sbjct: 88  LVFLPGFYHLRIAYYASKGYRGYSYDDI 115


>sp|Q96A57|CT030_HUMAN UPF0414 transmembrane protein C20orf30
           OS=Homo sapiens GN=C20orf30 PE=2 SV=1
          Length = 120

 Score = 34.3 bits (77), Expect = 0.34
 Identities = 14/28 (50%), Positives = 22/28 (78%), Gaps = 1/28 (3%)
 Frame = +3

Query: 180 LAFL-GFYYTRIAYYAYRGYKNFTFTEM 260
           L FL GFY+ RIAYYA +GY+ +++ ++
Sbjct: 88  LVFLPGFYHLRIAYYASKGYRGYSYDDI 115


>sp|Q5ZLH4|CT030_CHICK UPF0414 transmembrane protein C20orf30
           homolog OS=Gallus gallus GN=RCJMB04_6c24 PE=2 SV=1
          Length = 120

 Score = 34.3 bits (77), Expect = 0.34
 Identities = 14/28 (50%), Positives = 22/28 (78%), Gaps = 1/28 (3%)
 Frame = +3

Query: 180 LAFL-GFYYTRIAYYAYRGYKNFTFTEM 260
           L FL GFY+ RIAYYA +GY+ +++ ++
Sbjct: 88  LVFLPGFYHLRIAYYASKGYRGYSYDDI 115


>sp|Q5E975|CT030_BOVIN UPF0414 transmembrane protein C20orf30
           homolog OS=Bos taurus PE=2 SV=1
          Length = 120

 Score = 34.3 bits (77), Expect = 0.34
 Identities = 14/28 (50%), Positives = 22/28 (78%), Gaps = 1/28 (3%)
 Frame = +3

Query: 180 LAFL-GFYYTRIAYYAYRGYKNFTFTEM 260
           L FL GFY+ RIAYYA +GY+ +++ ++
Sbjct: 88  LVFLPGFYHLRIAYYASKGYRGYSYDDI 115


>sp|Q9T1S7|VP21_BPAPS Putative protein p21 OS=Acyrthosiphon pisum
           secondary endosymbiont phage 1 GN=21 PE=4 SV=1
          Length = 102

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -3

Query: 353 GVESSSIASTRFMLRLIRLHKPHIHCGSHVRHLCECEIL-VSSVCII 216
           G E+S    T F+LR I  +KPH H  +H   + +C  L +  +C I
Sbjct: 2   GFENSPHPPTLFLLRSILRYKPHQHRTNHNPMIVQCRSLTLPGLCCI 48


>sp|Q9Y485|DMXL1_HUMAN DmX-like protein 1 OS=Homo sapiens GN=DMXL1
            PE=1 SV=2
          Length = 3027

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 5/65 (7%)
 Frame = +1

Query: 40   PLSAQASISRAVSAHLWHPLPHSRPRP-----PFSYSSQAARVCLHSLCNVGLLFSDSTT 204
            P+S    +   +S  +W P  H    P     PFS   QA R  L S   + L      +
Sbjct: 893  PVSLDEKVDTKLSEAVWQPEEHYSSSPEKILSPFSQKYQACRANLQSTSRLTLFSEMVYS 952

Query: 205  QGLHI 219
            Q LH+
Sbjct: 953  QELHL 957
tr_hit_id A5CB04
Definition tr|A5CB04|A5CB04_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 26
Score (bit) 45.1
E-value 9.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914371|Adiantum capillus-veneris mRNA, clone:
YMU001_000058_B08.
         (508 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5CB04|A5CB04_VITVI Putative uncharacterized protein OS=Vitis...    45   9e-08
tr|Q9SZQ6|Q9SZQ6_ARATH Putative uncharacterized protein F27B13.9...    49   2e-07
tr|A9SRL6|A9SRL6_PHYPA Predicted protein OS=Physcomitrella paten...    45   4e-07
tr|O64568|O64568_ARATH Expressed protein (Putative uncharacteriz...    50   5e-07
tr|Q207T6|Q207T6_9ASPA Putative uncharacterized protein OS=Gymna...    42   2e-06
tr|A9NYT5|A9NYT5_PICSI Putative uncharacterized protein OS=Picea...    45   3e-06
tr|B7FME0|B7FME0_MEDTR Putative uncharacterized protein OS=Medic...    45   0.002
tr|Q6ETP4|Q6ETP4_ORYSJ Os02g0176400 protein OS=Oryza sativa subs...    45   0.003
tr|B6TQQ7|B6TQQ7_MAIZE Putative uncharacterized protein OS=Zea m...    45   0.003
tr|A2X1I9|A2X1I9_ORYSI Putative uncharacterized protein OS=Oryza...    45   0.003
tr|A9PGK0|A9PGK0_POPTR Putative uncharacterized protein OS=Popul...    41   0.029
tr|A9PER7|A9PER7_POPTR Putative uncharacterized protein OS=Popul...    41   0.029
tr|B4FHH3|B4FHH3_MAIZE Putative uncharacterized protein OS=Zea m...    34   0.038
tr|A9RNL1|A9RNL1_PHYPA Predicted protein (Fragment) OS=Physcomit...    35   0.18 
tr|B3S393|B3S393_TRIAD Putative uncharacterized protein OS=Trich...    38   0.32 
tr|A9T257|A9T257_PHYPA Predicted protein (Fragment) OS=Physcomit...    37   0.41 
tr|Q2RAZ4|Q2RAZ4_ORYSJ Expressed protein OS=Oryza sativa subsp. ...    34   0.64 
tr|B8BLV0|B8BLV0_ORYSI Putative uncharacterized protein OS=Oryza...    34   0.64 
tr|B8BIW9|B8BIW9_ORYSI Putative uncharacterized protein OS=Oryza...    34   0.64 
tr|A7PN07|A7PN07_VITVI Chromosome chr14 scaffold_21, whole genom...    32   0.64 
tr|Q4IWI3|Q4IWI3_AZOVI Similar to ABC-type uncharacterized trans...    37   0.72 
tr|Q68EX6|Q68EX6_XENLA MGC84111 protein OS=Xenopus laevis GN=MGC...    36   1.2  
tr|A7SGM3|A7SGM3_NEMVE Predicted protein OS=Nematostella vectens...    36   1.2  
tr|Q3KIB1|Q3KIB1_PSEPF Putative uncharacterized protein OS=Pseud...    35   2.7  
tr|A5EA90|A5EA90_BRASB Putative uncharacterized protein OS=Brady...    35   2.7  
tr|Q6GM26|Q6GM26_XENLA MGC84021 protein OS=Xenopus laevis GN=MGC...    34   3.5  
tr|Q6DET5|Q6DET5_XENTR MGC89669 protein OS=Xenopus tropicalis GN...    34   3.5  
tr|Q28C04|Q28C04_XENTR Novel protein OS=Xenopus tropicalis GN=TE...    34   3.5  
tr|B5X9I3|B5X9I3_SALSA UPF0414 transmembrane protein C20orf30 ho...    34   3.5  
tr|B5X879|B5X879_SALSA UPF0414 transmembrane protein C20orf30 ho...    34   3.5  

>tr|A5CB04|A5CB04_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_030526 PE=4 SV=1
          Length = 103

 Score = 45.1 bits (105), Expect(2) = 9e-08
 Identities = 18/26 (69%), Positives = 22/26 (84%)
 Frame = +3

Query: 192 GFYYTRIAYYAYRGYKNFTFTEMSNV 269
           GFYYTRIAYYAY+GYK F+F+ +  V
Sbjct: 78  GFYYTRIAYYAYKGYKGFSFSNIPPV 103



 Score = 35.0 bits (79), Expect(2) = 9e-08
 Identities = 15/31 (48%), Positives = 22/31 (70%)
 Frame = +2

Query: 2   EDAAFEGTFIAHNRFPLKQVSLALFLLTSGT 94
           ED   E ++I HNR P+K+++LA+ LL  GT
Sbjct: 13  EDIMMETSYIVHNRPPIKEIALAVALLVFGT 43


>tr|Q9SZQ6|Q9SZQ6_ARATH Putative uncharacterized protein F27B13.90
           (At4g29850) (Putative uncharacterized protein AT4g29850)
           OS=Arabidopsis thaliana GN=AT4g29850 PE=4 SV=1
          Length = 103

 Score = 48.9 bits (115), Expect(2) = 2e-07
 Identities = 22/40 (55%), Positives = 28/40 (70%)
 Frame = +3

Query: 150 GLSSLSLQCGLAFLGFYYTRIAYYAYRGYKNFTFTEMSNV 269
           G+  + L C L   GFYYTRIAYYAY+GYK F+F+ +  V
Sbjct: 64  GIFFIVLGCLLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV 103



 Score = 30.0 bits (66), Expect(2) = 2e-07
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +2

Query: 2   EDAAFEGTFIAHNRFPLKQVSLALFLLTSGT 94
           ED   E ++  +NR P+K+++LA+ LL  GT
Sbjct: 13  EDIMIETSYTVNNRPPVKEIALAVALLVFGT 43


>tr|A9SRL6|A9SRL6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_230563 PE=4 SV=1
          Length = 101

 Score = 45.4 bits (106), Expect(2) = 4e-07
 Identities = 21/31 (67%), Positives = 25/31 (80%), Gaps = 1/31 (3%)
 Frame = +3

Query: 180 LAFL-GFYYTRIAYYAYRGYKNFTFTEMSNV 269
           L FL GFYYTRIAYYAY+GYK F+F+ +  V
Sbjct: 71  LLFLPGFYYTRIAYYAYKGYKGFSFSNIPAV 101



 Score = 32.3 bits (72), Expect(2) = 4e-07
 Identities = 14/25 (56%), Positives = 19/25 (76%)
 Frame = +2

Query: 20 GTFIAHNRFPLKQVSLALFLLTSGT 94
          GTFI HN  P+K+++LA+ LL  GT
Sbjct: 17 GTFIVHNGPPVKEIALAVTLLALGT 41


>tr|O64568|O64568_ARATH Expressed protein (Putative uncharacterized
           protein At2g19350) (Putative uncharacterized protein)
           OS=Arabidopsis thaliana GN=At2g19350 PE=2 SV=1
          Length = 103

 Score = 50.1 bits (118), Expect(2) = 5e-07
 Identities = 22/40 (55%), Positives = 29/40 (72%)
 Frame = +3

Query: 150 GLSSLSLQCGLAFLGFYYTRIAYYAYRGYKNFTFTEMSNV 269
           G+  + L C L   GFYYTRIAYYAY+GYK F+F+ + +V
Sbjct: 64  GIFFIVLGCLLFIPGFYYTRIAYYAYKGYKGFSFSNIPSV 103



 Score = 27.3 bits (59), Expect(2) = 5e-07
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 2   EDAAFEGTFIAHNRFPLKQVSLALFLLTSGT 94
           ED     ++   NR P+K++SLA+ LL  GT
Sbjct: 13  EDLMIGTSYTVSNRPPVKEISLAVGLLVFGT 43


>tr|Q207T6|Q207T6_9ASPA Putative uncharacterized protein
           OS=Gymnadenia conopsea PE=4 SV=1
          Length = 103

 Score = 42.4 bits (98), Expect(2) = 2e-06
 Identities = 17/26 (65%), Positives = 20/26 (76%)
 Frame = +3

Query: 192 GFYYTRIAYYAYRGYKNFTFTEMSNV 269
           GFYYTRIAYYAY+GY  F+F  +  V
Sbjct: 78  GFYYTRIAYYAYKGYTGFSFANIPAV 103



 Score = 33.1 bits (74), Expect(2) = 2e-06
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = +2

Query: 2   EDAAFEGTFIAHNRFPLKQVSLALFLLTSG 91
           ED   E +++ HNR P+K+++LA+ LL  G
Sbjct: 13  EDIMMESSYVVHNRPPVKEIALAVALLVFG 42


>tr|A9NYT5|A9NYT5_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=4 SV=1
          Length = 101

 Score = 45.4 bits (106), Expect(2) = 3e-06
 Identities = 19/32 (59%), Positives = 26/32 (81%), Gaps = 1/32 (3%)
 Frame = +3

Query: 177 GLAFL-GFYYTRIAYYAYRGYKNFTFTEMSNV 269
           G+ F+ GFYYTR+AYYAY+GYK F+F+ +  V
Sbjct: 70  GMLFIPGFYYTRLAYYAYKGYKGFSFSNIPPV 101



 Score = 29.6 bits (65), Expect(2) = 3e-06
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +2

Query: 20 GTFIAHNRFPLKQVSLALFLLTSGT 94
          G++  HN  P+K++SLA+ LL  GT
Sbjct: 17 GSYAVHNSPPIKEISLAVALLVFGT 41


>tr|B7FME0|B7FME0_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=4 SV=1
          Length = 103

 Score = 45.1 bits (105), Expect = 0.002
 Identities = 18/26 (69%), Positives = 22/26 (84%)
 Frame = +3

Query: 192 GFYYTRIAYYAYRGYKNFTFTEMSNV 269
           GFYYTRIAYYAY+GYK F+F+ +  V
Sbjct: 78  GFYYTRIAYYAYKGYKGFSFSNIPPV 103


>tr|Q6ETP4|Q6ETP4_ORYSJ Os02g0176400 protein OS=Oryza sativa subsp.
           japonica GN=P0504A05.1 PE=4 SV=1
          Length = 103

 Score = 44.7 bits (104), Expect = 0.003
 Identities = 17/23 (73%), Positives = 21/23 (91%)
 Frame = +3

Query: 192 GFYYTRIAYYAYRGYKNFTFTEM 260
           GFYYTRIAYYAY+GYK F+F+ +
Sbjct: 78  GFYYTRIAYYAYKGYKGFSFSNI 100


>tr|B6TQQ7|B6TQQ7_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 103

 Score = 44.7 bits (104), Expect = 0.003
 Identities = 17/23 (73%), Positives = 21/23 (91%)
 Frame = +3

Query: 192 GFYYTRIAYYAYRGYKNFTFTEM 260
           GFYYTRIAYYAY+GYK F+F+ +
Sbjct: 78  GFYYTRIAYYAYKGYKGFSFSNI 100


>tr|A2X1I9|A2X1I9_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_06069 PE=4 SV=1
          Length = 103

 Score = 44.7 bits (104), Expect = 0.003
 Identities = 17/23 (73%), Positives = 21/23 (91%)
 Frame = +3

Query: 192 GFYYTRIAYYAYRGYKNFTFTEM 260
           GFYYTRIAYYAY+GYK F+F+ +
Sbjct: 78  GFYYTRIAYYAYKGYKGFSFSNI 100