NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914372
Clone id YMU001_000058_B09
Library
Length 333
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000058_B09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CAGCGGGCTTGCGAGCTATTGTGTAGGCGCAGCTGGTTGGGGAACGATAATATGTTGGTG
TGTATGTGATCTGTATAGAGGTACTGCAATATTTTCATCACCTTGTGCATTAGCTTCAGT
ACCAGCGATGCATTAATTGCTGCGTATAGGCGCAGCTGGTTGGGGAACGATAATATGTAG
GTGTGTATGTGATCTGTATAGAGGTACTGCAATATTTTCATCACCTTGTGTATTAGCTAT
CAGTACCAGCGATGCATTAATTGCTGCGTATAGTATCAACACAAGGTGTCGATCTTGATC
AGCCGTGATTGGCTGTCGTGGCTGCAGAGAAAT
■■Homology search results ■■ -
sp_hit_id P24265
Definition sp|P24265|MOVP_AMVYS Movement protein OS=Alfalfa mosaic virus (strain YSMV)
Align length 59
Score (bit) 30.8
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914372|Adiantum capillus-veneris mRNA, clone:
YMU001_000058_B09.
         (333 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P24265|MOVP_AMVYS Movement protein OS=Alfalfa mosaic virus (s...    31   2.2  
sp|P03596|MOVP_AMVST Movement protein OS=Alfalfa mosaic virus (s...    31   2.2  
sp|P48792|XYL1_TRIKO Arabinofuranosidase/B-xylosidase OS=Trichod...    30   2.9  
sp|Q6BUQ1|SRB8_DEBHA Mediator of RNA polymerase II transcription...    30   2.9  
sp|Q92455|ABF1_TRIRE Alpha-N-arabinofuranosidase OS=Trichoderma ...    30   2.9  
sp|P05672|MOVP_AMVMA Movement protein OS=Alfalfa mosaic virus (s...    30   4.9  
sp|P03595|MOVP_AMVLE Movement protein OS=Alfalfa mosaic virus (s...    30   4.9  
sp|A0RQX4|LEPA_CAMFF GTP-binding protein lepA OS=Campylobacter f...    29   8.4  
sp|Q80TB7|ZSWM6_MOUSE Zinc finger SWIM domain-containing protein...    29   8.4  
sp|O00085|PHYA1_ASPTE 3-phytase A OS=Aspergillus terreus GN=phyA...    29   8.4  

>sp|P24265|MOVP_AMVYS Movement protein OS=Alfalfa mosaic virus
           (strain YSMV) GN=RNA3 PE=3 SV=1
          Length = 300

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 21/59 (35%), Positives = 29/59 (49%)
 Frame = -2

Query: 218 KILQYLYTDHIHTYILSFPNQLRLYAAINASLVLKLMHKVMKILQYLYTDHIHTNILSF 42
           KI Q LY  H   Y+L  PN L+   + + S+ LKL  +  + L  + TDH  T    F
Sbjct: 81  KIGQRLYVHHSAIYLLYMPNILK---SSSGSITLKLFDEATEELVDVDTDHDATQACIF 136


>sp|P03596|MOVP_AMVST Movement protein OS=Alfalfa mosaic virus
           (strain Strasbourg) GN=RNA3 PE=3 SV=1
          Length = 300

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 20/59 (33%), Positives = 30/59 (50%)
 Frame = -2

Query: 218 KILQYLYTDHIHTYILSFPNQLRLYAAINASLVLKLMHKVMKILQYLYTDHIHTNILSF 42
           KI Q +Y  H   Y+L  PN L+   + + S+ LKL ++  + L  + TDH  T    F
Sbjct: 81  KIGQRMYVHHSAIYLLYMPNILK---SSSGSITLKLFNEATEELVDVDTDHDATQACIF 136


>sp|P48792|XYL1_TRIKO Arabinofuranosidase/B-xylosidase
           OS=Trichoderma koningii GN=xyl1 PE=3 SV=1
          Length = 500

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +2

Query: 137 LLRIGAAGWGTIICRCVCDLYRGTAIFSSPCVLAISTSDALIAAYS 274
           ++  G    G+++    CD+Y       +PCV A ST+ AL +AY+
Sbjct: 7   IIAAGCIAAGSLVAAGPCDIYSSGG---TPCVAAHSTTRALFSAYT 49


>sp|Q6BUQ1|SRB8_DEBHA Mediator of RNA polymerase II transcription
           subunit 12 OS=Debaryomyces hansenii GN=SRB8 PE=3 SV=2
          Length = 1661

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
 Frame = -2

Query: 215 ILQYLYTDHIHTYIL---SFPNQLRLYAAINASLVLKLMHKVMKILQYLYTDHIHTNILS 45
           +L Y + + I TY     ++ ++    AA++++L LKL+  +   + YL+    +TN+  
Sbjct: 398 LLNYYFIERIPTYNTKSSNYSHKQNHTAALSSTLKLKLLSSISDTVNYLFKH--NTNVFI 455

Query: 44  FPNQLRLHNSS 12
            PN   L N +
Sbjct: 456 IPNYWILVNET 466


>sp|Q92455|ABF1_TRIRE Alpha-N-arabinofuranosidase OS=Trichoderma
           reesei GN=abf1 PE=2 SV=1
          Length = 500

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +2

Query: 137 LLRIGAAGWGTIICRCVCDLYRGTAIFSSPCVLAISTSDALIAAYS 274
           ++  G    G+++    CD+Y       +PCV A ST+ AL +AY+
Sbjct: 7   IIAAGCIAAGSLVAAGPCDIYSSGG---TPCVAAHSTTRALFSAYT 49


>sp|P05672|MOVP_AMVMA Movement protein OS=Alfalfa mosaic virus
           (strain 425 / isolate Madison) GN=RNA3 PE=3 SV=1
          Length = 300

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 20/59 (33%), Positives = 29/59 (49%)
 Frame = -2

Query: 218 KILQYLYTDHIHTYILSFPNQLRLYAAINASLVLKLMHKVMKILQYLYTDHIHTNILSF 42
           KI Q +Y  H   Y+L  PN L+   + + S+ LKL ++    L  + TDH  T    F
Sbjct: 81  KIGQRMYVHHSAIYLLYMPNILK---SSSGSITLKLFNEATGELVDVDTDHDATQACIF 136


>sp|P03595|MOVP_AMVLE Movement protein OS=Alfalfa mosaic virus
           (strain 425 / isolate Leiden) GN=RNA3 PE=3 SV=1
          Length = 300

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 20/59 (33%), Positives = 29/59 (49%)
 Frame = -2

Query: 218 KILQYLYTDHIHTYILSFPNQLRLYAAINASLVLKLMHKVMKILQYLYTDHIHTNILSF 42
           KI Q +Y  H   Y+L  PN L+   + + S+ LKL ++    L  + TDH  T    F
Sbjct: 81  KIGQRMYVHHSAIYLLYMPNILK---SSSGSITLKLFNEATGELVDVDTDHDATQACIF 136


>sp|A0RQX4|LEPA_CAMFF GTP-binding protein lepA OS=Campylobacter
           fetus subsp. fetus (strain 82-40) GN=lepA PE=3 SV=1
          Length = 596

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 228 QGDENIAVPLYRSHTHLHIIVPQPAAPIRSN 136
           +GDE   +   + HT L ++ P P API++N
Sbjct: 218 KGDEVYVMGTDKKHTVLDLMYPNPIAPIKTN 248


>sp|Q80TB7|ZSWM6_MOUSE Zinc finger SWIM domain-containing protein 6
           (Fragment) OS=Mus musculus GN=Zswim6 PE=2 SV=2
          Length = 1017

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = -2

Query: 179 YILSFPNQLRLYAAINASLVLKLMHKVMKILQYLYTDHIHTNILSFPNQL 30
           Y +  P Q++L+  I+ +L      ++ K +QYL T H HT +L    +L
Sbjct: 83  YRIRKPEQVKLHLPISETLFQMNRDQLQKFVQYLITVH-HTEVLPTAQKL 131


>sp|O00085|PHYA1_ASPTE 3-phytase A OS=Aspergillus terreus GN=phyA
           PE=1 SV=1
          Length = 466

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +2

Query: 194 LYRGTAIFSSPCVLAISTSDALIAAYSINTRCRS*SAVIGCRGCRE 331
           LY GTA  S   V ++S +D   AA+++    R+   ++ CR  +E
Sbjct: 374 LYNGTAPLSQTSVESVSQTDGYAAAWTVPFAARAYVEMMQCRAEKE 419
tr_hit_id Q120B3
Definition tr|Q120B3|Q120B3_POLSJ Carbamoyl-phosphate synthase L chain, ATP-binding OS=Polaromonas sp. (strain JS666 / ATCC BAA-500)
Align length 44
Score (bit) 34.7
E-value 2.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914372|Adiantum capillus-veneris mRNA, clone:
YMU001_000058_B09.
         (333 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q120B3|Q120B3_POLSJ Carbamoyl-phosphate synthase L chain, ATP...    35   2.5  
tr|Q0CEE5|Q0CEE5_ASPTN Alpha-N-arabinofuranosidase OS=Aspergillu...    35   2.5  
tr|B3PEQ9|B3PEQ9_CELJU Endo-1,4-beta glucanase, putative, cel9B ...    33   7.2  
tr|A7MES0|A7MES0_ENTS8 Putative uncharacterized protein OS=Enter...    33   9.4  

>tr|Q120B3|Q120B3_POLSJ Carbamoyl-phosphate synthase L chain,
           ATP-binding OS=Polaromonas sp. (strain JS666 / ATCC
           BAA-500) GN=Bpro_5270 PE=4 SV=1
          Length = 665

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +2

Query: 32  AGWGTIICWCVCDLYRGTAIFSSPCALASVPAMH*LLRIGAAGW 163
           AGW  + CW + D + G  + S P   A  PA+  +L+ G A W
Sbjct: 472 AGWSALGCWTLWDGFTGWRLSSGPIQAAPQPAL--VLKAGVAEW 513


>tr|Q0CEE5|Q0CEE5_ASPTN Alpha-N-arabinofuranosidase OS=Aspergillus
           terreus (strain NIH 2624) GN=ATEG_07939 PE=4 SV=1
          Length = 506

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = +2

Query: 146 IGAAGWGTIICRCVCDLYRGTAIFSSPCVLAISTSDALIAAYS 274
           +G  G GT++    CD+Y       +PCV A ST+ AL +AY+
Sbjct: 15  LGVVGTGTLVAAGPCDIYSSGG---TPCVAAHSTTRALYSAYT 54


>tr|B3PEQ9|B3PEQ9_CELJU Endo-1,4-beta glucanase, putative, cel9B
           OS=Cellvibrio japonicus (strain Ueda107) GN=cel9B PE=4
           SV=1
          Length = 626

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 20/79 (25%), Positives = 37/79 (46%)
 Frame = +2

Query: 44  TIICWCVCDLYRGTAIFSSPCALASVPAMH*LLRIGAAGWGTIICRCVCDLYRGTAIFSS 223
           T+ CW  C   +  ++ S PC++ S+  +  L+    +G GT   + V      +++ SS
Sbjct: 6   TVACWRTCLFVKAYSLLSKPCSIFSLALLPLLVAGCGSGGGT--AKPVTGSSSTSSVVSS 63

Query: 224 PCVLAISTSDALIAAYSIN 280
           P   A S+S   +    +N
Sbjct: 64  PASSAASSSVVNLGLIKLN 82


>tr|A7MES0|A7MES0_ENTS8 Putative uncharacterized protein
           OS=Enterobacter sakazakii (strain ATCC BAA-894)
           GN=ESA_02449 PE=4 SV=1
          Length = 1383

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 24/67 (35%), Positives = 30/67 (44%)
 Frame = -1

Query: 204 PLYRSHTHLHIIVPQPAAPIRSN*CIAGTEANAQGDENIAVPLYRSHTHQHIIVPQPAAP 25
           P  + HTH    V QPAAP +S     G     Q  +  A P   + THQ  + PQ   P
Sbjct: 782 PAQQPHTH----VAQPAAPAQSYVQPQGYVPQPQAPQGYAQP---AATHQPQMQPQSVVP 834

Query: 24  TQ*LASP 4
           TQ   +P
Sbjct: 835 TQGYQAP 841