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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914373
Clone id YMU001_000058_B10
Library
Length 511
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000058_B10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTACCTCCTTCTCAGCCCTATCAAGCACTTACACAAGCATCAGAGTGCAAGATGTGAGAA
CTTTCCAGCTATGGGGCCGAACAAAGTTTCGACCACATTTTAGGCATGGTGGCAAGCAAA
TCTCTCTACAGTGTTTGGTGTAAAAAGACCAACACTATGAACCAAAAGGTACCATGTTGG
TTGTGCACAGATCCCTCGTGCACAACACAGTCAATAAGAAAAGCACGTAGAGATATGCCT
CAACTAAATCCTCGTCCCAGATAAAGTTGTGTATATTCAACAAAAACTCGTCAGAGTAAT
CAACATGCCAACCAAAAGCAAAGCGTAGCATCTTGTAGTCCCAACATCCTCTGCAGGCCA
AGAGGTCAAGAACCTCTCAAGAACAATGCGATTTAGTGCATGATCGACAAAGTAATGCTT
GAAAATGCATCACTACTATCAATCACCCTGACCTTTCATATTTTCTCTCCTTGCATGTCC
TGGCAACAGCTATTTCAATTGCAATATCCAC
■■Homology search results ■■ -
sp_hit_id Q5XGU1
Definition sp|Q5XGU1|TM178_XENLA Transmembrane protein 178 OS=Xenopus laevis
Align length 30
Score (bit) 30.0
E-value 6.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914373|Adiantum capillus-veneris mRNA, clone:
YMU001_000058_B10.
         (511 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5XGU1|TM178_XENLA Transmembrane protein 178 OS=Xenopus laevi...    30   6.5  
sp|Q68FV0|TM178_RAT Transmembrane protein 178 OS=Rattus norvegic...    30   6.5  
sp|Q9CZ16|TM178_MOUSE Transmembrane protein 178 OS=Mus musculus ...    30   6.5  
sp|Q8NBL3|TM178_HUMAN Transmembrane protein 178 OS=Homo sapiens ...    30   6.5  
sp|O08653|TEP1_RAT Telomerase protein component 1 OS=Rattus norv...    30   6.5  
sp|P97576|GRPE1_RAT GrpE protein homolog 1, mitochondrial OS=Rat...    30   6.5  
sp|O94986|CE152_HUMAN Centrosomal protein of 152 kDa OS=Homo sap...    30   6.5  
sp|P09246|DNBI_VZVD Major DNA-binding protein OS=Varicella-zoste...    30   8.5  

>sp|Q5XGU1|TM178_XENLA Transmembrane protein 178 OS=Xenopus laevis
           GN=tmem178 PE=2 SV=1
          Length = 304

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -1

Query: 268 NFIWDEDLVEAYLYVLFLLT-VLCTRDLCT 182
           +F W+E L +    +LFL+T + CT  LCT
Sbjct: 205 SFFWEESLTQHVAGLLFLMTGIFCTISLCT 234


>sp|Q68FV0|TM178_RAT Transmembrane protein 178 OS=Rattus norvegicus
           GN=Tmem178 PE=2 SV=1
          Length = 297

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -1

Query: 268 NFIWDEDLVEAYLYVLFLLT-VLCTRDLCT 182
           +F W+E L +    +LFL+T + CT  LCT
Sbjct: 198 SFFWEESLTQHVAGLLFLMTGIFCTISLCT 227


>sp|Q9CZ16|TM178_MOUSE Transmembrane protein 178 OS=Mus musculus
           GN=Tmem178 PE=2 SV=2
          Length = 297

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -1

Query: 268 NFIWDEDLVEAYLYVLFLLT-VLCTRDLCT 182
           +F W+E L +    +LFL+T + CT  LCT
Sbjct: 198 SFFWEESLTQHVAGLLFLMTGIFCTISLCT 227


>sp|Q8NBL3|TM178_HUMAN Transmembrane protein 178 OS=Homo sapiens
           GN=TMEM178 PE=2 SV=1
          Length = 297

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -1

Query: 268 NFIWDEDLVEAYLYVLFLLT-VLCTRDLCT 182
           +F W+E L +    +LFL+T + CT  LCT
Sbjct: 198 SFFWEESLTQHVAGLLFLMTGIFCTISLCT 227


>sp|O08653|TEP1_RAT Telomerase protein component 1 OS=Rattus
           norvegicus GN=Tep1 PE=1 SV=1
          Length = 2629

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 30/120 (25%), Positives = 47/120 (39%), Gaps = 6/120 (5%)
 Frame = +1

Query: 169 VPCWLCTDPSCTTQSIRKARRDMPQLNPRPR*SCVYSTKTRQSNQHANQKQSVASCSPNI 348
           VP   C   + T +  +     + + NPR      + +KTR S Q    +++    S + 
Sbjct: 363 VPLPACLRAAMTDKFAQFDEYQLAKYNPRK-----HRSKTR-SRQPPRPQRTKPPFSESG 416

Query: 349 LCRPRGQEPLKNNAI*------CMIDKVMLENASLLSITLTFHIFSPCMSWQQLFQLQYP 510
            C P+   PLKN  I        + +K  L   +L  +    HI  P    Q L   +YP
Sbjct: 417 KCFPKSVWPLKNEQISFEAAYNAVSEKKRLPRFTLKKLVEQLHIHEPAQHVQALLGYRYP 476


>sp|P97576|GRPE1_RAT GrpE protein homolog 1, mitochondrial OS=Rattus
           norvegicus GN=Grpel1 PE=1 SV=2
          Length = 217

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
 Frame = +1

Query: 214 IRKARRDMPQL----NPRPR*SCVYSTKTRQSNQHANQKQSVASCSP 342
           +R ARR +P L     P PR  C   T T+Q N   N ++ +  C P
Sbjct: 6   VRLARRSLPALALSFRPSPRLLC---TATKQKNNGQNLEEDLGHCEP 49


>sp|O94986|CE152_HUMAN Centrosomal protein of 152 kDa OS=Homo sapiens
            GN=CEP152 PE=1 SV=3
          Length = 1654

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
 Frame = +1

Query: 109  VASKSLYSVWCKKTNTMNQKVPCWLCTDPSCTTQSIRKARRDMPQLNPRPR*SC----VY 276
            + S+ L +V   K N +NQK+PC +       + S+    R + +  P+ R +C    + 
Sbjct: 1312 LTSEMLIAVKKSKRNDVNQKIPCCI----ESKSNSVNTITRTLCEQAPKRRAACNLQRLL 1367

Query: 277  STKTRQSNQHANQKQS 324
                 QS +H   K++
Sbjct: 1368 ENSEHQSIKHVGSKET 1383


>sp|P09246|DNBI_VZVD Major DNA-binding protein OS=Varicella-zoster
           virus (strain Dumas) GN=29 PE=3 SV=1
          Length = 1204

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = +1

Query: 148 TNTMNQKVPCWLC---TDPSCTTQSIRKARRDMPQLNPRPR 261
           T T + ++PC LC   T P C   ++ + R+ MP+     R
Sbjct: 488 TGTFDSEIPCSLCEKHTRPVCAHTTVHRLRQRMPRFGQATR 528
tr_hit_id B6PIL8
Definition tr|B6PIL8|B6PIL8_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae
Align length 66
Score (bit) 33.5
E-value 6.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914373|Adiantum capillus-veneris mRNA, clone:
YMU001_000058_B10.
         (511 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6PIL8|B6PIL8_BRAFL Putative uncharacterized protein OS=Branc...    33   6.2  

>tr|B6PIL8|B6PIL8_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_107397 PE=4 SV=1
          Length = 477

 Score = 33.5 bits (75), Expect = 6.2
 Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
 Frame = +1

Query: 1   LPP----SQPYQALTQASECKM*ELSSYGAEQSFDHILGMVASKSLYSVWCKKTNTMNQK 168
           LPP    S+P  + +  S+    +  S G + +FD ILG +  +++ + W  +TNTM Q+
Sbjct: 93  LPPVGIGSRPSSSASSGSDTAP-DARSVGHDGNFDGILGYM-DEAVIADWLMRTNTMVQE 150

Query: 169 VPCWLC 186
           +  W C
Sbjct: 151 LSHWCC 156