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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914377
Clone id YMU001_000058_C02
Library
Length 517
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000058_C02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTTTTTGTTTTTTTTGATTGTTTCAAAGTTTTCTCTACTTGGAGGAGCAAATTTTCACAA
TTTTCATTTCCATTATTCACCTCAAACTTTACCTTCTTTTCATAGTTTTTGGCTTTTGCT
ACTGTATCCAAGAATTTTTGGCTCCTATACCCTTCACCTGGTAGAATAATTCCTTCCGCA
ACCCTTCGGTAAAAATTTACTTTGGAGTGCATTTCCTTTCACTTTAGGTGCATACTTGTG
TAGTTTGCTTTGTTTTCTTTGCATTCATATATAATTAAACTATCCTTGTCTTTTGGATGT
TGCTAAAGGATGTAGAACTCCATCTTCTTATCCATGTTGTAATGAAGAGAGCAAACAAAT
TTTTTGCATTGACTTTGAACTCGTCCCACAAAATTGGGCGTACCTTCTATGTTTGCTTTA
AACATGCATTCCATCATTGTTTTTCTACTTTGACTTCTTCCAAGAAAGTCTTCAAAGAGA
AATAACCTTTTAGATCTTAAACACACATCTTGAGATA
■■Homology search results ■■ -
sp_hit_id P36837
Definition sp|P36837|YHIP_ECOLI Inner membrane transporter yhiP OS=Escherichia coli (strain K12)
Align length 60
Score (bit) 31.2
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914377|Adiantum capillus-veneris mRNA, clone:
YMU001_000058_C02.
         (502 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P36837|YHIP_ECOLI Inner membrane transporter yhiP OS=Escheric...    31   2.9  
sp|P54987|IRG1_MOUSE Immune-responsive gene 1 protein OS=Mus mus...    31   2.9  
sp|P70691|UD12_MOUSE UDP-glucuronosyltransferase 1-2 OS=Mus musc...    30   4.9  
sp|P0C262|YCF1B_PIPCE Putative membrane protein ycf1 C-terminal ...    30   6.3  
sp|Q13585|MTR1L_HUMAN Melatonin-related receptor OS=Homo sapiens...    30   6.3  
sp|Q3EBP1|FB124_ARATH Putative F-box protein At2g33655 OS=Arabid...    30   6.4  
sp|O80758|FB68_ARATH Putative F-box protein At1g60370 OS=Arabido...    30   8.3  

>sp|P36837|YHIP_ECOLI Inner membrane transporter yhiP OS=Escherichia
           coli (strain K12) GN=yhiP PE=1 SV=2
          Length = 489

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 21/60 (35%), Positives = 31/60 (51%)
 Frame = +2

Query: 53  FHYSPQTLPSFHSFWLLLLYPRIFGSYTLHLVE*FLPQPFGKNLLWSAFPFTLGAYLCSL 232
           F  +P +  + + FW++L  P + G YT HL         GK+L      FTLG ++CSL
Sbjct: 307 FSINPVSFQALNPFWVVLASPILAGIYT-HLGN------KGKDLSMP-MKFTLGMFMCSL 358


>sp|P54987|IRG1_MOUSE Immune-responsive gene 1 protein OS=Mus
           musculus GN=Irg1 PE=2 SV=2
          Length = 488

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 29  GANFHNFHFHYSPQTLPSFHS-FWLLLLYPRIFGSYTLHL 145
           G+ F  F+ +YSP+ LPS  S  WLL      F S+  HL
Sbjct: 239 GSGFGAFYANYSPEDLPSLDSHIWLLDQQDVAFKSFPAHL 278


>sp|P70691|UD12_MOUSE UDP-glucuronosyltransferase 1-2 OS=Mus
           musculus GN=Ugt1 PE=1 SV=1
          Length = 533

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 1/101 (0%)
 Frame = +2

Query: 203 FTLGAYLCSLLCFLCIHI*LNYPCLLDV-AKGCRTPSSYPCCNEESKQIFCIDFELVPQN 379
           F  GA L   L    + I  +  C ++  A  C  PSSY   N  ++    +DF    QN
Sbjct: 154 FPCGAVLAKYLQIPAVFILRSLSCGIEYEATQCPNPSSY-IPNLLTRLSDHMDFLQRVQN 212

Query: 380 WAYLLCLL*TCIPSLFFYFDFFQESLQREITF*ILNTHLEI 502
             Y L L   C  S+  Y     E LQRE++   + +H  +
Sbjct: 213 MLYYLVLKYICRLSITPYESLASELLQREVSLVEVLSHASV 253


>sp|P0C262|YCF1B_PIPCE Putative membrane protein ycf1 C-terminal
           part OS=Piper cenocladum GN=ycf1 PE=5 SV=1
          Length = 1535

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 34/118 (28%), Positives = 52/118 (44%)
 Frame = -3

Query: 443 RSQSRKTMMECMFKANIEGTPNFVGRVQSQCKKFVCSLHYNMDKKMEFYIL*QHPKDKDS 264
           RSQ RKT++  MF+AN    P F+ R+      F  S   +M K++EF        +K  
Sbjct: 381 RSQRRKTLILEMFQANAH-PPLFLDRLNKTSFSFNFS-KMSMGKELEFKTANSENAEKRE 438

Query: 263 LIIYECKENKANYTSMHLK*KEMHSKVNFYRRVAEGIILPGEGYRSQKFLDTVAKAKN 90
            +I E K +K++     L   E    V F + +   I++     R    L T+   KN
Sbjct: 439 AVIKE-KTDKSD----RLAIAETWDSVTFAQPIRGCILVAQSIVRKYIILPTLIIGKN 491


>sp|Q13585|MTR1L_HUMAN Melatonin-related receptor OS=Homo sapiens
           GN=GPR50 PE=2 SV=1
          Length = 613

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +3

Query: 15  FLYLEEQIFTIFISIIHLKLYLLFIVFGFCY 107
           F YL   +FT+ I  IH  L LL +  GFCY
Sbjct: 180 FNYLNNPVFTVTIVCIHFVLPLLIV--GFCY 208


>sp|Q3EBP1|FB124_ARATH Putative F-box protein At2g33655
           OS=Arabidopsis thaliana GN=At2g33655 PE=4 SV=1
          Length = 150

 Score = 30.0 bits (66), Expect = 6.4
 Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 5/63 (7%)
 Frame = -1

Query: 448 LEEVKVEKQ*WNACLKQT*KVRPILWDEF-----KVNAKNLFALFITTWIRRWSSTSFSN 284
           + EV+V  + WNA  K   K       EF     K   +N F LF   W+R      FSN
Sbjct: 24  MREVRVTCKTWNALSKHISKAEAAREGEFLGIAKKKFCRNSFLLFSIPWLRVLIVVDFSN 83

Query: 283 IQK 275
             K
Sbjct: 84  AMK 86


>sp|O80758|FB68_ARATH Putative F-box protein At1g60370
           OS=Arabidopsis thaliana GN=At1g60370 PE=4 SV=1
          Length = 283

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 44  NFHFHYSPQTLPSFHSFWLLLLYPRIFGSYTLHLV 148
           +FH  +S  T P FHS   L+ +  + G+YT+ +V
Sbjct: 93  DFHMKFSVSTFPDFHSCSGLIHFSMMKGAYTVPVV 127
tr_hit_id Q601R7
Definition tr|Q601R7|Q601R7_MYCH2 Putative uncharacterized protein OS=Mycoplasma hyopneumoniae (strain 232)
Align length 102
Score (bit) 35.8
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914377|Adiantum capillus-veneris mRNA, clone:
YMU001_000058_C02.
         (502 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q601R7|Q601R7_MYCH2 Putative uncharacterized protein OS=Mycop...    36   1.1  
tr|Q4AA92|Q4AA92_MYCHJ Putative uncharacterized protein OS=Mycop...    35   1.5  
tr|Q4A8B9|Q4A8B9_MYCH7 Putative uncharacterized protein OS=Mycop...    35   1.5  
tr|Q9RGK3|Q9RGK3_BACFR Putative flippase OS=Bacteroides fragilis...    34   3.3  

>tr|Q601R7|Q601R7_MYCH2 Putative uncharacterized protein
           OS=Mycoplasma hyopneumoniae (strain 232) GN=mhp134 PE=4
           SV=1
          Length = 1210

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 8/102 (7%)
 Frame = -3

Query: 350 KKFVCSLHYNM--DKKMEFYIL*QHPKDKDSLIIYECKENKANYTSMHLK*KEMHSKVNF 177
           KK+  SL +N+  D K+EF +  QHP DK +   ++ K+N     +++     + ++  F
Sbjct: 306 KKYSSSLKFNIKSDTKIEFLLHFQHPDDK-NYYDFKLKDN----VNINFLTNIVQNQDKF 360

Query: 176 YRRVAEGIILPGEGYRSQKFLD------TVAKAKNYEKKVKF 69
           + R+    I+PG+ Y  + +         + KAKN E+K  F
Sbjct: 361 WERLT---IIPGKIYEQKDYTPKIDKPIEILKAKNKERKQNF 399


>tr|Q4AA92|Q4AA92_MYCHJ Putative uncharacterized protein
           OS=Mycoplasma hyopneumoniae (strain J / ATCC 25934 /
           NCTC 10110) GN=MHJ_0238 PE=4 SV=2
          Length = 1210

 Score = 35.4 bits (80), Expect = 1.5
 Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 8/102 (7%)
 Frame = -3

Query: 350 KKFVCSLHYNM--DKKMEFYIL*QHPKDKDSLIIYECKENKANYTSMHLK*KEMHSKVNF 177
           KK+  SL +N+  D K+EF +  QHP DK +   ++ K+N     +++     + ++  F
Sbjct: 306 KKYNSSLKFNIKSDTKIEFLLHFQHPDDK-NYYDFKLKDN----VNINFLTNIVENQDKF 360

Query: 176 YRRVAEGIILPGEGYRSQKFLD------TVAKAKNYEKKVKF 69
           + R+    I+PG+ Y  + +         + KAKN E+K  F
Sbjct: 361 WERLT---IIPGKIYEQKDYTPKIDKPIEILKAKNKERKQNF 399


>tr|Q4A8B9|Q4A8B9_MYCH7 Putative uncharacterized protein
           OS=Mycoplasma hyopneumoniae (strain 7448)
           GN=MHP7448_0246 PE=4 SV=2
          Length = 1210

 Score = 35.4 bits (80), Expect = 1.5
 Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 8/102 (7%)
 Frame = -3

Query: 350 KKFVCSLHYNM--DKKMEFYIL*QHPKDKDSLIIYECKENKANYTSMHLK*KEMHSKVNF 177
           KK+  SL +N+  D K+EF +  QHP DK +   ++ K+N     +++     + ++  F
Sbjct: 306 KKYNSSLKFNIKSDTKIEFLLHFQHPDDK-NYYDFKLKDN----VNINFLTNIVENQDKF 360

Query: 176 YRRVAEGIILPGEGYRSQKFLD------TVAKAKNYEKKVKF 69
           + R+    I+PG+ Y  + +         + KAKN E+K  F
Sbjct: 361 WERLT---IIPGKIYEQKDYTPKIDKPIEILKAKNKERKQNF 399


>tr|Q9RGK3|Q9RGK3_BACFR Putative flippase OS=Bacteroides fragilis
           GN=wzx PE=4 SV=1
          Length = 509

 Score = 34.3 bits (77), Expect = 3.3
 Identities = 28/78 (35%), Positives = 38/78 (48%)
 Frame = +3

Query: 27  EEQIFTIFISIIHLKLYLLFIVFGFCYCIQEFLAPIPFTW*NNSFRNPSVKIYFGVHFLS 206
           +E I +IFIS + L ++LLF       C  E L  IP    N+S   P VK+ F + FLS
Sbjct: 85  QEYISSIFISNVFLSVFLLFPAV-LIVCSLETLLNIP----NSSI--PDVKLLFALIFLS 137

Query: 207 L*VHTXXXXXXXXAFIYN 260
           + V+T         F  N
Sbjct: 138 MIVNTLSSVFGVSVFAKN 155