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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914378
Clone id YMU001_000058_C03
Library
Length 638
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000058_C03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ACAACACCAAAAAAAATATCCATCATCTCATTCCTCCCCCACTACATCTAAGCACCAGCT
ATGGAGGCTTTGCTTCAATGCCAACACATCATCGTGTATGAACCATGTCTTCTTCACCTT
GGCAGTGTATGACAACAGCTCAACAGCTCCGTAGCCACATACAAGAACCTTAAGTGGACC
TTACTCCCATGCCACGGTAGTAATGCTGCCATTATTAAGCGAGCAAGTAGCCCCTCAATA
AGTATGACCAGCGGCAAGCCTTCAAAGCCCTTTGTGCAGTTTCTTAAAGCTCTAATAAAC
TGGTTCTTGCTCCGGATGTGCATGGAGTCCAATAGATCGGTGAAGCTGAATATTGTGGTT
TGTCTGATATGCACAAAGTCTAGAAGTAGACAACCCATGACGGCGGCACAACAAAACCAA
GCTCTGATGCTTGTGGGTGCGGCCAAGTATGTCGAAGACCAATGCCCCGCCCATTTATTA
GAGGCAGTAGACAAACACCACAACACAGTGCTCCATGAAGTGAATAGGACATCAAACTGA
AGTACATGAGGTGGGCAGCTTAAGGAAATTCATAAAACATCCCTCTCTGAAAAGAGCTTC
ACATGTACTTGAACCAGATTTTGACACAATTACTTTCT
■■Homology search results ■■ -
sp_hit_id Q6GV28
Definition sp|Q6GV28|P22CD_HUMAN Transmembrane protein PMP22CD OS=Homo sapiens
Align length 102
Score (bit) 32.3
E-value 2.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914378|Adiantum capillus-veneris mRNA, clone:
YMU001_000058_C03.
         (638 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6GV28|P22CD_HUMAN Transmembrane protein PMP22CD OS=Homo sapi...    32   2.1  
sp|O07402|YE86_MYCAV Uncharacterized protein MAV321 OS=Mycobacte...    30   8.1  
sp|Q3AC76|RNH2_CARHZ Ribonuclease HII OS=Carboxydothermus hydrog...    30   8.1  

>sp|Q6GV28|P22CD_HUMAN Transmembrane protein PMP22CD OS=Homo sapiens
           GN=PMP22CD PE=2 SV=1
          Length = 225

 Score = 32.3 bits (72), Expect = 2.1
 Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 6/102 (5%)
 Frame = -1

Query: 533 DVLFTSWSTVLWCLSTASNKWAGHWSSTYLAAPTSIRAWFCCAAVMGCLLLDFVHIRQTT 354
           ++LF+SW+ VL  +    +KW    S    A         CC A+     L  V I  T+
Sbjct: 13  NILFSSWAVVLMVMGITLDKWVELISEDERAKMNHSPWMMCCPALWPEDDLKVVRIMMTS 72

Query: 353 IFSFTDLLDSM------HIRSKNQFIRALRNCTKGFEGLPLV 246
               + LL+ +      ++  +N++I+        F G+ L+
Sbjct: 73  SLGLSFLLNLILGMKFTYLIPQNKYIQLFTTILSFFSGISLL 114


>sp|O07402|YE86_MYCAV Uncharacterized protein MAV321
           OS=Mycobacterium avium PE=4 SV=2
          Length = 306

 Score = 30.4 bits (67), Expect = 8.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 503 LWCLSTASNKWAGHWSSTYLAAPTSIR 423
           +WC S + + WA  W +   +APTS+R
Sbjct: 1   MWCPSVSLSLWANAWLAGKASAPTSLR 27


>sp|Q3AC76|RNH2_CARHZ Ribonuclease HII OS=Carboxydothermus
           hydrogenoformans (strain Z-2901 / DSM 6008) GN=rnhB PE=3
           SV=1
          Length = 231

 Score = 30.4 bits (67), Expect = 8.1
 Identities = 19/49 (38%), Positives = 29/49 (59%)
 Frame = -1

Query: 404 AVMGCLLLDFVHIRQTTIFSFTDLLDSMHIRSKNQFIRALRNCTKGFEG 258
           AV+G  L+D ++I Q T F+F   LDS+ I+ +   + AL+    GF G
Sbjct: 99  AVVGPDLIDRLNIYQATKFAFKAALDSLSIKPEALILDALK--LTGFSG 145
tr_hit_id A6W6J6
Definition tr|A6W6J6|A6W6J6_KINRD Putative PAS/PAC sensor protein OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216)
Align length 49
Score (bit) 36.2
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914378|Adiantum capillus-veneris mRNA, clone:
YMU001_000058_C03.
         (638 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A6W6J6|A6W6J6_KINRD Putative PAS/PAC sensor protein OS=Kineoc...    36   1.7  
tr|B4L8D1|B4L8D1_DROMO GI10935 OS=Drosophila mojavensis GN=GI109...    35   3.8  

>tr|A6W6J6|A6W6J6_KINRD Putative PAS/PAC sensor protein OS=Kineococcus
            radiotolerans (strain ATCC BAA-149 / DSM 14245 /
            SRS30216) GN=Krad_0947 PE=4 SV=1
          Length = 956

 Score = 36.2 bits (82), Expect = 1.7
 Identities = 18/49 (36%), Positives = 27/49 (55%)
 Frame = -1

Query: 359  TTIFSFTDLLDSMHIRSKNQFIRALRNCTKGFEGLPLVILIEGLLARLI 213
            +T+  FTD L     R   + +  L+ C  G  GL L  L++G+LARL+
Sbjct: 868  STVLMFTDGLVERRDRGLEEGLEELQECVAGLAGLTLDELVDGVLARLV 916


>tr|B4L8D1|B4L8D1_DROMO GI10935 OS=Drosophila mojavensis GN=GI10935
           PE=4 SV=1
          Length = 397

 Score = 35.0 bits (79), Expect = 3.8
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -1

Query: 506 VLWCLSTASNKWAGHWSSTYLAAPTSIRAWFCCAAVMGC 390
           +LW L+  +  W   W + Y+  PT I+ W  CA    C
Sbjct: 237 ILWRLTNVNIGWLLLWQTVYVVLPTIIKIWTLCAVCDSC 275