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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914382
Clone id YMU001_000058_C07
Library
Length 584
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000058_C07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TGTAAACTTTTGAAAGCTGTTGCTGGTGTCGAGGTTGATGCCGAGGTGGAGATTCCAGTT
GTTGTGAACAAGAAGGCAATCATAGAGGTACCCGCTTTAGACGGAGCAGATGCCAATGGC
AGAAGAGTGAGGTCCAGAGCCTAATGTGTGGAAGAAGTAGCTTTGTGCTAACTTGATGGA
TTAGTAGGCTTGGAGAAACTGACCTAGTTCTGTGGAACTTCATTTGCTATGGCATTATCC
ACTGCTTTATTTGTAGCTCTGAGGTTGTACAATAGTCATGCTCTGAGCAGGATGAAGAGA
ATCCCTGAGAAGCCTGGGCTTTACTTAATCGATTTGGTGGGGCCTGCTGGGCATATGCTG
TGAAGTTTCATGGGGACAATTGGCCCTTTTGGCAGGGCATGGTCTGCAGTGAATGAGAGC
TGCCTTTAATTGACACATGGACACTAATTTCTGTTGATGACTCGTTGTAACTAACCAGAG
TTGCTGAAGGCTTGGTTCTTCTTTCAGAAGAAATACCAGCAACTGTATTAGGAGGACATT
TAGTTTGTGGAGTTAGTGTCTGTATTTTGAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q7SHX8
Definition sp|Q7SHX8|EFR3_NEUCR Protein efr-3 OS=Neurospora crassa
Align length 77
Score (bit) 32.3
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914382|Adiantum capillus-veneris mRNA, clone:
YMU001_000058_C07.
         (569 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7SHX8|EFR3_NEUCR Protein efr-3 OS=Neurospora crassa GN=efr-3...    32   1.7  
sp|Q7W0H1|UBIE_BORPE Ubiquinone/menaquinone biosynthesis methylt...    32   2.2  
sp|Q7W3N6|UBIE_BORPA Ubiquinone/menaquinone biosynthesis methylt...    32   2.2  
sp|Q7WF12|UBIE_BORBR Ubiquinone/menaquinone biosynthesis methylt...    32   2.2  
sp|P75580|RL3_MYCPN 50S ribosomal protein L3 OS=Mycoplasma pneum...    32   2.2  
sp|Q8Y278|UBIE_RALSO Ubiquinone/menaquinone biosynthesis methylt...    31   3.8  
sp|Q475X0|UBIE_RALEJ Ubiquinone/menaquinone biosynthesis methylt...    31   4.9  
sp|Q0KEH6|UBIE_RALEH Ubiquinone/menaquinone biosynthesis methylt...    30   6.4  
sp|Q2KUG1|UBIE_BORA1 Ubiquinone/menaquinone biosynthesis methylt...    30   6.4  
sp|A8MWY0|K132L_HUMAN UPF0577 protein KIAA1324-like OS=Homo sapi...    30   6.4  
sp|Q5M871|FAIM3_RAT Fas apoptotic inhibitory molecule 3 OS=Rattu...    30   6.4  
sp|P06850|CRF_HUMAN Corticoliberin OS=Homo sapiens GN=CRH PE=1 SV=1    30   6.4  
sp|Q1LRG9|UBIE_RALME Ubiquinone/menaquinone biosynthesis methylt...    30   8.4  
sp|Q0BBY4|UBIE_BURCM Ubiquinone/menaquinone biosynthesis methylt...    30   8.4  
sp|A0KAF5|UBIE_BURCH Ubiquinone/menaquinone biosynthesis methylt...    30   8.4  
sp|Q1BTN4|UBIE_BURCA Ubiquinone/menaquinone biosynthesis methylt...    30   8.4  

>sp|Q7SHX8|EFR3_NEUCR Protein efr-3 OS=Neurospora crassa GN=efr-3 PE=3
            SV=1
          Length = 1125

 Score = 32.3 bits (72), Expect = 1.7
 Identities = 24/77 (31%), Positives = 37/77 (48%)
 Frame = -2

Query: 535  PPNTVAGISSERRTKPSATLVSYNESSTEISVHVSIKGSSHSLQTMPCQKGQLSP*NFTA 356
            PP T  GI+ +       +LVSY+ + +E+S + +  GS            Q SP N T+
Sbjct: 946  PPPTSHGINFQHSDDSDDSLVSYDMAPSELSFNPAASGSR-----------QGSPGN-TS 993

Query: 355  YAQQAPPNRLSKAQASQ 305
             A  +PP R S+ +  Q
Sbjct: 994  QAASSPPRRTSQDRTQQ 1010


>sp|Q7W0H1|UBIE_BORPE Ubiquinone/menaquinone biosynthesis
           methyltransferase ubiE OS=Bordetella pertussis GN=ubiE
           PE=3 SV=1
          Length = 258

 Score = 32.0 bits (71), Expect = 2.2
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 298 RIPEKPGLYLIDLVGPAGHML*SFMGTIGPFGRAW-SAVNESCL 426
           R   +PG+ ++D+ G  G +  +F    GP G  W + +NES L
Sbjct: 67  RAAVRPGMKVLDIAGGTGDLARAFAKRAGPSGEVWLTDINESML 110


>sp|Q7W3N6|UBIE_BORPA Ubiquinone/menaquinone biosynthesis
           methyltransferase ubiE OS=Bordetella parapertussis
           GN=ubiE PE=3 SV=1
          Length = 258

 Score = 32.0 bits (71), Expect = 2.2
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 298 RIPEKPGLYLIDLVGPAGHML*SFMGTIGPFGRAW-SAVNESCL 426
           R   +PG+ ++D+ G  G +  +F    GP G  W + +NES L
Sbjct: 67  RAAVRPGMKVLDIAGGTGDLARAFAKRAGPSGEVWLTDINESML 110


>sp|Q7WF12|UBIE_BORBR Ubiquinone/menaquinone biosynthesis
           methyltransferase ubiE OS=Bordetella bronchiseptica
           GN=ubiE PE=3 SV=1
          Length = 258

 Score = 32.0 bits (71), Expect = 2.2
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 298 RIPEKPGLYLIDLVGPAGHML*SFMGTIGPFGRAW-SAVNESCL 426
           R   +PG+ ++D+ G  G +  +F    GP G  W + +NES L
Sbjct: 67  RAAVRPGMKVLDIAGGTGDLARAFAKRAGPSGEVWLTDINESML 110


>sp|P75580|RL3_MYCPN 50S ribosomal protein L3 OS=Mycoplasma
           pneumoniae GN=rplC PE=3 SV=1
          Length = 287

 Score = 32.0 bits (71), Expect = 2.2
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = -2

Query: 538 CPPNTVAGISSERRTKPSATLVSYN 464
           C PN VAG+ +E + K SATL+S++
Sbjct: 31  CEPNQVAGVKTEAKDKYSATLLSFD 55


>sp|Q8Y278|UBIE_RALSO Ubiquinone/menaquinone biosynthesis
           methyltransferase ubiE OS=Ralstonia solanacearum GN=ubiE
           PE=3 SV=1
          Length = 243

 Score = 31.2 bits (69), Expect = 3.8
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
 Frame = +1

Query: 277 HALSRMKRIPE---KPGLYLIDLVGPAGHML*SFMGTIGPFGRAW-SAVNESCL 426
           H L +M  I +   +PG  ++D+ G  G +  +F    GP G  W + +NES L
Sbjct: 43  HRLWKMFTIAQAAVRPGYKVLDIAGGTGDLAKAFARQAGPTGEVWLTDINESML 96


>sp|Q475X0|UBIE_RALEJ Ubiquinone/menaquinone biosynthesis
           methyltransferase ubiE OS=Ralstonia eutropha (strain
           JMP134) GN=ubiE PE=3 SV=1
          Length = 243

 Score = 30.8 bits (68), Expect = 4.9
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
 Frame = +1

Query: 277 HALSRMKRIPE---KPGLYLIDLVGPAGHML*SFMGTIGPFGRAW-SAVNESCL 426
           H L +M  I +   +PG  ++D+ G  G +  +F    GP G+ W + +NES L
Sbjct: 43  HRLWKMFTIAQANVRPGHKVLDIAGGTGDLAKAFAKQAGPTGQVWLTDINESML 96


>sp|Q0KEH6|UBIE_RALEH Ubiquinone/menaquinone biosynthesis
           methyltransferase ubiE OS=Ralstonia eutropha (strain
           ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=ubiE PE=3
           SV=1
          Length = 243

 Score = 30.4 bits (67), Expect = 6.4
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
 Frame = +1

Query: 277 HALSRMKRIPE---KPGLYLIDLVGPAGHML*SFMGTIGPFGRAW-SAVNESCL 426
           H L +M  I +   +PG  ++D+ G  G +  +F    GP G  W + +NES L
Sbjct: 43  HRLWKMFTIAQAGVRPGHKVLDIAGGTGDLAKAFAKQAGPTGEVWLTDINESML 96


>sp|Q2KUG1|UBIE_BORA1 Ubiquinone/menaquinone biosynthesis
           methyltransferase ubiE OS=Bordetella avium (strain 197N)
           GN=ubiE PE=3 SV=1
          Length = 256

 Score = 30.4 bits (67), Expect = 6.4
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +1

Query: 310 KPGLYLIDLVGPAGHML*SFMGTIGPFGRAW-SAVNESCL 426
           +PG+ ++D+ G  G +  +F    GP G  W + +N+S L
Sbjct: 69  RPGMKVLDIAGGTGDLARAFAKRAGPSGEVWLTDINDSML 108


>sp|A8MWY0|K132L_HUMAN UPF0577 protein KIAA1324-like OS=Homo sapiens
           GN=KIAA1324L PE=2 SV=2
          Length = 1029

 Score = 30.4 bits (67), Expect = 6.4
 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 12/73 (16%)
 Frame = -2

Query: 439 HVSIKGSSHSLQTMPCQKGQLSP*NFTAYAQQAPPNRLSK------------AQASQGFS 296
           +++I+G +++ +  PC+ G  S    +   Q  P N  S+            +Q S+  S
Sbjct: 278 NITIEGVAYTSECFPCKPGTFSNKPGSFNCQVCPRNTYSEKGAKECIRCKDDSQFSEEGS 337

Query: 295 SSCSEHDYCTTSE 257
           S C+E   CTT +
Sbjct: 338 SECTERPPCTTKD 350
tr_hit_id A3BF53
Definition tr|A3BF53|A3BF53_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica
Align length 62
Score (bit) 37.4
E-value 0.59
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914382|Adiantum capillus-veneris mRNA, clone:
YMU001_000058_C07.
         (569 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A3BF53|A3BF53_ORYSJ Putative uncharacterized protein OS=Oryza...    37   0.59 
tr|B3LWF3|B3LWF3_DROAN GF16343 OS=Drosophila ananassae GN=GF1634...    35   3.8  
tr|A6GQW2|A6GQW2_9BURK Ubiquinone/menaquinone biosynthesis methy...    34   5.0  
tr|Q6DEY6|Q6DEY6_XENTR MGC89379 protein OS=Xenopus tropicalis GN...    33   8.5  

>tr|A3BF53|A3BF53_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_021675 PE=4 SV=1
          Length = 457

 Score = 37.4 bits (85), Expect = 0.59
 Identities = 22/62 (35%), Positives = 30/62 (48%)
 Frame = -2

Query: 559 TLTPQTKCPPNTVAGISSERRTKPSATLVSYNESSTEISVHVSIKGSSHSLQTMPCQKGQ 380
           TL P+TK  P+  AG    RR  PSA   S   SS+  +   +   S H++Q   C   +
Sbjct: 82  TLRPKTKSNPHLFAGADEGRRAPPSAGANSSQSSSSTTAESTARDSSLHTVQVFRCFCAR 141

Query: 379 LS 374
           LS
Sbjct: 142 LS 143


>tr|B3LWF3|B3LWF3_DROAN GF16343 OS=Drosophila ananassae GN=GF16343
           PE=4 SV=1
          Length = 174

 Score = 34.7 bits (78), Expect = 3.8
 Identities = 28/90 (31%), Positives = 40/90 (44%)
 Frame = -2

Query: 550 PQTKCPPNTVAGISSERRTKPSATLVSYNESSTEISVHVSIKGSSHSLQTMPCQKGQLSP 371
           PQ K   N    + S  +   S+ +VS   SS+  S  ++  G  H+L T     G LS 
Sbjct: 8   PQAKTIGNGFLQLKSSGQASTSSIVVSSTSSSSGSSSSLTGNGLRHTL-TASTSYGSLSS 66

Query: 370 *NFTAYAQQAPPNRLSKAQASQGFSSSCSE 281
              +AY QQ      + A+AS   S +C E
Sbjct: 67  SAASAYHQQQQAAATAAAEASAEQSQNCME 96


>tr|A6GQW2|A6GQW2_9BURK Ubiquinone/menaquinone biosynthesis
           methyltransferase OS=Limnobacter sp. MED105 GN=ubiE PE=4
           SV=1
          Length = 246

 Score = 34.3 bits (77), Expect = 5.0
 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +1

Query: 310 KPGLYLIDLVGPAGHML*SFMGTIGPFGRAW-SAVNESCL 426
           +PG+ ++D+ G  G +  +F+  +GP G  W + +NES L
Sbjct: 59  RPGMKVLDIAGGTGDLSKAFLDKVGPSGEVWLTDINESML 98


>tr|Q6DEY6|Q6DEY6_XENTR MGC89379 protein OS=Xenopus tropicalis
           GN=MGC89379 PE=2 SV=1
          Length = 384

 Score = 33.5 bits (75), Expect = 8.5
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
 Frame = -2

Query: 550 PQTKCPPNTVAGISSERRTKPSATLVSYNESSTEISVH---VSIKGSSHS-----LQTMP 395
           P +KCPP   + +S+  + +  +T+   + +S  ISVH    + K SS S     LQ++ 
Sbjct: 84  PVSKCPPKNASTVSAPSKAQSKSTVSKASSTSVAISVHSHRAAKKDSSESSTNLLLQSLN 143

Query: 394 CQKGQLSP*NFTAYAQQAPP 335
            +K   S  + TA+     P
Sbjct: 144 QEKTDQSDVSATAFPSSMYP 163