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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914385
Clone id YMU001_000058_C10
Library
Length 463
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000058_C10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTTTTTTTCTTTTTTTTTGAAGGAAAAATGTAAAAAGTGAACTTATGGGTCCGCCTAGAA
CAGCTTCGGAAGCATTCCATCAAATATAAGGAGCTGCTAAAATGGCTGACAAGACCTTTG
AATTCTTATGAGATAATCATAATTCATAGCCTTTGCTATCATGAATTATGCTTTCAAAAG
AGTTTACTTTGAGAGCACTGTATTTACATCTATTCCATGGACTAGATGTACCCCCCCAAA
CCAAAAAAAGGTCAGGAAAAATAAACTCATTGGGGAAAACTTGAAGCTCCTCAAAATGCT
TCCTTTTACAAAGAACCCTCTTAGGGGCACTGACTTGCCTCTTCACTGCTTCTTTGATCT
CTGTCTGTTGGCAGAGGCTCGAAACCATTCAAGACACTCTTCTACAGTTGCTTGCATATG
GCAGAGCTGCCACTTTCGAATTTGCATTTGCCATTCTTTGATC
■■Homology search results ■■ -
sp_hit_id Q751D2
Definition sp|Q751D2|SRB8_ASHGO Mediator of RNA polymerase II transcription subunit 12 OS=Ashbya gossypii
Align length 43
Score (bit) 29.6
E-value 6.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914385|Adiantum capillus-veneris mRNA, clone:
YMU001_000058_C10.
         (445 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q751D2|SRB8_ASHGO Mediator of RNA polymerase II transcription...    30   6.0  
sp|P05555|ITAM_MOUSE Integrin alpha-M OS=Mus musculus GN=Itgam P...    30   6.0  
sp|P79949|RFNG_XENLA Beta-1,3-N-acetylglucosaminyltransferase ra...    29   7.8  
sp|Q9P771|PRM1_SCHPO Plasma membrane fusion protein prm1 OS=Schi...    29   10.0 

>sp|Q751D2|SRB8_ASHGO Mediator of RNA polymerase II transcription
           subunit 12 OS=Ashbya gossypii GN=SRB8 PE=3 SV=1
          Length = 1358

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = -2

Query: 276 LRSFKFSPMSLFFLTFFWFGGVHLVHGI---DVNTVLSK*TLL 157
           + +F+F P+SL  L  FW G     HGI   D + ++SK T++
Sbjct: 277 VENFEFLPLSLHLLNIFWSGICPPTHGIEAPDNSFLISKITVV 319


>sp|P05555|ITAM_MOUSE Integrin alpha-M OS=Mus musculus GN=Itgam PE=1
           SV=2
          Length = 1153

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 10/73 (13%)
 Frame = +2

Query: 224 QKKVRKNKLIGENLKLLKMLPFTKNPLRGTDLPLHCFFDLCL----------LAEARNHS 373
           Q++V KNK  GE    L++   TK+ LR  D+     +DL L            E +N++
Sbjct: 639 QEQVLKNKDAGEVRVCLRVRKNTKDRLREGDIQSTVTYDLALDPVRSRIRAFFDETKNNT 698

Query: 374 RHSSTVACIWQSC 412
           R  + V  + Q C
Sbjct: 699 RRRTQVFGLMQKC 711


>sp|P79949|RFNG_XENLA Beta-1,3-N-acetylglucosaminyltransferase
           radical fringe OS=Xenopus laevis GN=rfng PE=2 SV=1
          Length = 340

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -1

Query: 280 HFEELQVFPNEFIFPDLFLVWGGTSSPWNRCKYSALKVNSFESIIHD 140
           H E LQ  P E +   + L +GG  + WN      ++VN   S+  D
Sbjct: 296 HLEHLQRLPTESLLKQVTLSYGGPDNKWN-----VVRVNGAFSLAED 337


>sp|Q9P771|PRM1_SCHPO Plasma membrane fusion protein prm1
           OS=Schizosaccharomyces pombe GN=prm1 PE=2 SV=1
          Length = 703

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 28/93 (30%), Positives = 42/93 (45%)
 Frame = +3

Query: 117 NHNS*PLLS*IMLSKEFTLRALYLHLFHGLDVPPQTKKRSGKINSLGKT*SSSKCFLLQR 296
           +H   PLL   +LSK    + +Y  L+  L+    T   SG  + + K+  S   F    
Sbjct: 512 SHIELPLLPTDILSKSIDNQTIYSSLYSSLNSSNSTVSFSGIFDRVEKSVISELNFSFLF 571

Query: 297 TLLGALTCLFTASLISVCWQRLETIQDTLLQLL 395
            LL  L C F   LI V    L+++  +LL L+
Sbjct: 572 FLLWLLICAF--GLIGVLSSWLKSLFLSLLDLV 602
tr_hit_id A9RJR2
Definition tr|A9RJR2|A9RJR2_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 28
Score (bit) 43.1
E-value 0.007
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914385|Adiantum capillus-veneris mRNA, clone:
YMU001_000058_C10.
         (445 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RJR2|A9RJR2_PHYPA Predicted protein (Fragment) OS=Physcomit...    43   0.007
tr|Q2QX33|Q2QX33_ORYSJ TRNA-nucleotidyltransferase, putative, ex...    42   0.015
tr|Q0IPS1|Q0IPS1_ORYSJ Os12g0171200 protein OS=Oryza sativa subs...    42   0.015
tr|B8BNE2|B8BNE2_ORYSI Putative uncharacterized protein OS=Oryza...    42   0.015
tr|Q94K06|Q94K06_ARATH TRNA adenylyltransferase-like protein OS=...    42   0.020
tr|A7QGJ5|A7QGJ5_VITVI Chromosome undetermined scaffold_92, whol...    42   0.020
tr|A5C470|A5C470_VITVI Putative uncharacterized protein OS=Vitis...    42   0.020
tr|A3CFD3|A3CFD3_ORYSJ Putative uncharacterized protein OS=Oryza...    37   0.63 
tr|Q4CA24|Q4CA24_CROWT Aminotransferase, class I and II OS=Croco...    36   1.1  
tr|A3IVA1|A3IVA1_9CHRO Aspartate aminotransferase OS=Cyanothece ...    36   1.1  
tr|B1X1P5|B1X1P5_CYAA5 Aminotransferase OS=Cyanothece (strain AT...    35   1.4  
tr|A9KDW7|A9KDW7_COXBN Putative uncharacterized protein OS=Coxie...    34   4.1  
tr|Q28DP4|Q28DP4_XENTR KIT ligand OS=Xenopus tropicalis GN=kitlg...    33   7.0  
tr|B4F6K4|B4F6K4_XENTR Kitlg protein OS=Xenopus tropicalis GN=ki...    33   7.0  
tr|Q2V889|Q2V889_STRPU Forkhead transcription factor J1 OS=Stron...    33   9.1  

>tr|A9RJR2|A9RJR2_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_21288 PE=3 SV=1
          Length = 508

 Score = 43.1 bits (100), Expect = 0.007
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = -2

Query: 444 IKEWQMQIRKWQLCHMQATVEECLEWFR 361
           +KEW  +  KW+L H + T E+CLEWF+
Sbjct: 475 VKEWMTRFHKWELAHPEGTEEQCLEWFQ 502


>tr|Q2QX33|Q2QX33_ORYSJ TRNA-nucleotidyltransferase, putative,
           expressed OS=Oryza sativa subsp. japonica
           GN=LOC_Os12g07350 PE=3 SV=1
          Length = 600

 Score = 42.0 bits (97), Expect = 0.015
 Identities = 14/35 (40%), Positives = 25/35 (71%)
 Frame = -2

Query: 444 IKEWQMQIRKWQLCHMQATVEECLEWFRASANRQR 340
           I +WQ ++ KWQL + + T EEC+EW + S ++++
Sbjct: 564 IGKWQQRLLKWQLAYPRGTTEECIEWMKQSQSKRQ 598


>tr|Q0IPS1|Q0IPS1_ORYSJ Os12g0171200 protein OS=Oryza sativa subsp.
           japonica GN=Os12g0171200 PE=3 SV=1
          Length = 537

 Score = 42.0 bits (97), Expect = 0.015
 Identities = 14/35 (40%), Positives = 25/35 (71%)
 Frame = -2

Query: 444 IKEWQMQIRKWQLCHMQATVEECLEWFRASANRQR 340
           I +WQ ++ KWQL + + T EEC+EW + S ++++
Sbjct: 501 IGKWQQRLLKWQLAYPRGTTEECIEWMKQSQSKRQ 535


>tr|B8BNE2|B8BNE2_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_37630 PE=4 SV=1
          Length = 536

 Score = 42.0 bits (97), Expect = 0.015
 Identities = 14/35 (40%), Positives = 25/35 (71%)
 Frame = -2

Query: 444 IKEWQMQIRKWQLCHMQATVEECLEWFRASANRQR 340
           I +WQ ++ KWQL + + T EEC+EW + S ++++
Sbjct: 500 IGKWQQRLLKWQLAYPRGTTEECIEWMKQSQSKRQ 534


>tr|Q94K06|Q94K06_ARATH TRNA adenylyltransferase-like protein
           OS=Arabidopsis thaliana GN=At1g22660 PE=2 SV=1
          Length = 605

 Score = 41.6 bits (96), Expect = 0.020
 Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -2

Query: 444 IKEWQMQIRKWQLCHMQATVEECLEWFR-ASANRQR 340
           I+EWQ ++  WQL +   T EEC EW R   A RQR
Sbjct: 568 IREWQQKLLTWQLAYPNGTAEECKEWMRDIKAKRQR 603


>tr|A7QGJ5|A7QGJ5_VITVI Chromosome undetermined scaffold_92, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00038345001 PE=3 SV=1
          Length = 529

 Score = 41.6 bits (96), Expect = 0.020
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = -2

Query: 444 IKEWQMQIRKWQLCHMQATVEECLEWFR 361
           +++WQ ++ +WQL H   T EECL+W R
Sbjct: 495 VRDWQQKLIQWQLAHPSGTAEECLDWMR 522


>tr|A5C470|A5C470_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_023389 PE=4 SV=1
          Length = 240

 Score = 41.6 bits (96), Expect = 0.020
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = -2

Query: 444 IKEWQMQIRKWQLCHMQATVEECLEWFR 361
           +++WQ ++ +WQL H   T EECL+W R
Sbjct: 206 VRDWQQKLIQWQLAHPSGTAEECLDWMR 233


>tr|A3CFD3|A3CFD3_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_034005 PE=3 SV=1
          Length = 786

 Score = 36.6 bits (83), Expect = 0.63
 Identities = 12/31 (38%), Positives = 22/31 (70%)
 Frame = -2

Query: 432 QMQIRKWQLCHMQATVEECLEWFRASANRQR 340
           Q ++ KWQL + + T EEC+EW + S ++++
Sbjct: 754 QQRLLKWQLAYPRGTTEECIEWMKQSQSKRQ 784


>tr|Q4CA24|Q4CA24_CROWT Aminotransferase, class I and II
           OS=Crocosphaera watsonii GN=CwatDRAFT_6548 PE=4 SV=1
          Length = 394

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = +1

Query: 67  YKELLKWLTRPLNSYEIIIIHSLCYHELCF 156
           ++E++KW T     YEI+++H LCY EL F
Sbjct: 192 FEEIIKWATH----YEIMLVHDLCYAELAF 217


>tr|A3IVA1|A3IVA1_9CHRO Aspartate aminotransferase OS=Cyanothece sp.
           CCY 0110 GN=CY0110_08386 PE=4 SV=1
          Length = 394

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = +1

Query: 67  YKELLKWLTRPLNSYEIIIIHSLCYHELCF 156
           ++E++KW T     YEI+++H LCY EL F
Sbjct: 192 FEEIIKWATH----YEIMLVHDLCYAELAF 217