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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914398
Clone id YMU001_000058_D12
Library
Length 490
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000058_D12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GAATGCAGGAAGTAGTTGAAACCTCCTTGGATGATGCTATGTAGACGTCTATGTTTGATG
CAGTGCTTGATCATACTTTGATGGAGACGGTACCTTCATAATTTATGAGTTCTTGATCAG
GATTTGACGAAGACACATAGCTTCTTAGTTTACGAGTTCTTCCACTGTACGATGGACGGC
AAGATTGATGATGCATTGGGGAGTTTGGTATGGTTAGAGTCTACCACACCTTGATACCTT
GGTACCTTCCTATAGTCTTTACCATGGATGATGAGTGGTCCCTTCCACTACAGTATGATT
GGGGCTTTGCAGGACTTCATAATACTACACAAAGATCGTATGTGAGGGATGCTGATAATT
CTTCAGTTGCAGGACAGGGATTTTGGGACCCATGAACTATATGAGATGCTATGGGATTGT
GTTTCATGTATGCTGAAGTCACTGTGGACTGACATTCGCTGCATCGTTGAGATGTGAATA
GAGCATCTGA
■■Homology search results ■■ -
sp_hit_id Q9XSI2
Definition sp|Q9XSI2|FKBP5_SAGOE FK506-binding protein 5 OS=Saguinus oedipus
Align length 75
Score (bit) 31.2
E-value 2.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914398|Adiantum capillus-veneris mRNA, clone:
YMU001_000058_D12.
         (490 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9XSI2|FKBP5_SAGOE FK506-binding protein 5 OS=Saguinus oedipu...    31   2.7  
sp|Q25490|APLP_MANSE Apolipophorins OS=Manduca sexta PE=2 SV=1         31   2.7  
sp|Q9XSH5|FKBP5_SAIBB FK506-binding protein 5 OS=Saimiri bolivie...    30   4.5  
sp|Q4ZG55|GREB1_HUMAN Protein GREB1 OS=Homo sapiens GN=GREB1 PE=...    30   5.8  
sp|Q9ERB4|CSPG2_RAT Versican core protein (Fragments) OS=Rattus ...    30   5.9  

>sp|Q9XSI2|FKBP5_SAGOE FK506-binding protein 5 OS=Saguinus oedipus
           GN=FKBP5 PE=2 SV=2
          Length = 457

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
 Frame = -1

Query: 301 QSYCSGRDHSSSMVKTIGRYQGIKVW--*TLTIPNSPMHHQSCRPSYS-GRTRKLRSYVS 131
           + + S  D +   V +IG+ Q IK W     T+    + H  C+P Y+ G T  L    S
Sbjct: 65  KKFDSSHDRNEPFVFSIGKGQVIKAWDIGVSTMKKGEICHLLCKPEYAYGATGSLPKIPS 124

Query: 130 SSNP--DQELINYEG 92
           ++    + EL+N++G
Sbjct: 125 NATLFFEVELLNFKG 139


>sp|Q25490|APLP_MANSE Apolipophorins OS=Manduca sexta PE=2 SV=1
          Length = 3305

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = -1

Query: 217  LTIPNSPMHHQSCRP-SYSGRTRKLRSYVSSSNPDQELINYEGTVSIKV 74
            +TI ++P         SY G+       VS+SN DQE+I+YEG ++ K+
Sbjct: 1570 MTISDAPKRGSGASTISYKGK-------VSNSNLDQEIIDYEGQINFKL 1611


>sp|Q9XSH5|FKBP5_SAIBB FK506-binding protein 5 OS=Saimiri
           boliviensis boliviensis GN=FKBP5 PE=1 SV=1
          Length = 457

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
 Frame = -1

Query: 310 AKPQSYCSGRDHSSSMVKTIGRYQGIKVW--*TLTIPNSPMHHQSCRPSYS-GRTRKLRS 140
           A  + + S  D +   V +IG+ Q IK W     T+    + H  C+P Y+ G T  L  
Sbjct: 62  ANGKKFDSSHDRNEPFVFSIGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGATGSLPK 121

Query: 139 YVSSSNP--DQELINYEG 92
             S++    + EL++++G
Sbjct: 122 IPSNATLFFEVELLDFKG 139


>sp|Q4ZG55|GREB1_HUMAN Protein GREB1 OS=Homo sapiens GN=GREB1 PE=2
            SV=1
          Length = 1949

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = -3

Query: 335  SLCSIMKSCKAPIIL*WKGPLIIHGKDYRKVPRYQGVVDSNHTKLPNASSILPS-IVQWK 159
            S CS+ K+C+ P       P++   K       Y  VV ++ + LP A+S+LPS  V W 
Sbjct: 1245 SQCSLTKACRQP-------PIVFLPKLV-----YDMVVSTDSSGLPKAASLLPSPSVMWA 1292

Query: 158  NS 153
            +S
Sbjct: 1293 SS 1294


>sp|Q9ERB4|CSPG2_RAT Versican core protein (Fragments) OS=Rattus
           norvegicus GN=Vcan PE=2 SV=2
          Length = 2738

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
 Frame = -1

Query: 226 W*TLTIPNSPMHHQSCRP-------SYSGRTRKLRSYVSSSNPDQE 110
           W   T P +P H  S  P       S+ G+T K   +++ SNP+ E
Sbjct: 841 WKPETYPETPEHFSSGEPDVFPTLPSHDGKTTKWSEFITESNPNTE 886
tr_hit_id B7Q7Z6
Definition tr|B7Q7Z6|B7Q7Z6_IXOSC Metalloendopeptidase OMA1, putative OS=Ixodes scapularis
Align length 74
Score (bit) 35.4
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914398|Adiantum capillus-veneris mRNA, clone:
YMU001_000058_D12.
         (490 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B7Q7Z6|B7Q7Z6_IXOSC Metalloendopeptidase OMA1, putative OS=Ix...    35   1.4  
tr|A2Q9G9|A2Q9G9_ASPNC Contig An01c0280, complete genome. OS=Asp...    34   4.2  
tr|Q1M362|Q1M362_RHIL3 Putative ATP-binding component of ABC tra...    33   7.1  
tr|A2AWV7|A2AWV7_9POTV Polyprotein OS=Narcissus degeneration vir...    33   9.3  
tr|B0UIS2|B0UIS2_METS4 Methyl-accepting chemotaxis sensory trans...    33   9.3  
tr|A8UP46|A8UP46_9FLAO 50S ribosomal protein L31 type B OS=Flavo...    33   9.3  

>tr|B7Q7Z6|B7Q7Z6_IXOSC Metalloendopeptidase OMA1, putative
           OS=Ixodes scapularis GN=IscW_ISCW010389 PE=4 SV=1
          Length = 345

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
 Frame = +1

Query: 145 LVYEFFHCTMDGKID--------DALGSLVWLESTTP*YLGTFL*SLPWMMSGPFHYSMI 300
           L +E  HC ++  ++        D L SLVWL + T          +PW+++  FHY++ 
Sbjct: 183 LAHEMAHCLLEHTLEKESLAFVLDKLTSLVWLSALTLVKGDVQAVLVPWLVTRVFHYTVF 242

Query: 301 GALQDFIILHKDRM 342
                F+ L  DR+
Sbjct: 243 LPQSRFMELESDRL 256


>tr|A2Q9G9|A2Q9G9_ASPNC Contig An01c0280, complete genome.
           OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
           GN=An01g07830 PE=4 SV=1
          Length = 502

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = -1

Query: 445 TVTSAYMKHNPIASHIVHGSQNPCPAT-EELSASLTYDLCVVL*SPAKPQSYCSGRDHSS 269
           T+   Y  HNP AS ++HG++ P   + E  S SL Y       +P     Y S  D+S 
Sbjct: 36  TLQQTYSHHNPYASSMLHGNRAPGEISYEHRSHSLDY-------TPPSSSEYVSSGDYSR 88

Query: 268 SM 263
           S+
Sbjct: 89  SL 90


>tr|Q1M362|Q1M362_RHIL3 Putative ATP-binding component of ABC
           transporter OS=Rhizobium leguminosarum bv. viciae
           (strain 3841) GN=pRL120755 PE=3 SV=1
          Length = 313

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 22/56 (39%), Positives = 27/56 (48%)
 Frame = -2

Query: 237 VSRCGRL*PYQTPQCIINLAVHRTVEELVN*EAMCLRQILIKNS*IMKVPSPSKYD 70
           + R GRL  Y TPQ I+   V+  VE  +  +    R  LI  S IM  P PS  D
Sbjct: 210 IMRDGRLLQYDTPQEILARPVNEFVESFLGPDRAIKRLSLIVVSMIMTAPEPSNGD 265


>tr|A2AWV7|A2AWV7_9POTV Polyprotein OS=Narcissus degeneration virus
            PE=3 SV=1
          Length = 3184

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 18/55 (32%), Positives = 29/55 (52%)
 Frame = -1

Query: 166  SGRTRKLRSYVSSSNPDQELINYEGTVSIKV*SSTASNIDVYIASSKEVSTTSCI 2
            S   ++++ Y+ S     + +N +GT S     S +SNI VY+AS  EV   S +
Sbjct: 1502 SSSQKQIKLYIESKLSFDDFVNAQGTSSNACMISKSSNILVYVASYNEVDQLSTL 1556


>tr|B0UIS2|B0UIS2_METS4 Methyl-accepting chemotaxis sensory
           transducer OS=Methylobacterium sp. (strain 4-46)
           GN=M446_4355 PE=4 SV=1
          Length = 425

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = -1

Query: 283 RDHSSSMVKTIGRYQGIKVW*TLTIPNSPMHHQSCRPSYSGRTRKLRSYVS 131
           R  +  ++  +GRY G+ +W  +     PMH +S R ++S + R+L  Y S
Sbjct: 5   RSANDELIAILGRYAGVGLWDAVLHEGDPMHPKS-RWTWSEQFRRLLGYAS 54


>tr|A8UP46|A8UP46_9FLAO 50S ribosomal protein L31 type B
           OS=Flavobacteriales bacterium ALC-1 GN=rpmE2 PE=4 SV=1
          Length = 582

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 14/116 (12%)
 Frame = -1

Query: 313 PAKPQSYCSGRDHSSS--------MVKTIGRYQ-----GIKVW*TLTIPNSPMHHQSCRP 173
           PA+ Q+Y SG D + +         VKTI ++      G +          P +  + R 
Sbjct: 23  PAELQAYYSGVDFTKTGTDLYDDLAVKTIAKHTLFLTYGERHQFLYDADEDPFNASNVRL 82

Query: 172 SYSGRTRKLRSYVSSSNPDQ-ELINYEGTVSIKV*SSTASNIDVYIASSKEVSTTS 8
            YSG +R    Y+S SNP+  +  N E      +  +  +  D+++  + ++S  S
Sbjct: 83  IYSGESRSKTEYLSGSNPNSPQTFNTEHVYPRSLLGNGTAEADLHLLRTCDISVNS 138