BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914401|Adiantum capillus-veneris mRNA, clone:
YMU001_000058_E04.
         (456 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5N1J4|DNAK2_SYNP6 Chaperone protein dnaK 2 OS=Synechococcus ...    30   4.9  
sp|P50021|DNAK2_SYNE7 Chaperone protein dnaK2 OS=Synechococcus e...    30   4.9  
sp|Q75E72|MED16_ASHGO Mediator of RNA polymerase II transcriptio...    30   5.0  

>sp|Q5N1J4|DNAK2_SYNP6 Chaperone protein dnaK 2 OS=Synechococcus sp.
           (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=dnaK2
           PE=2 SV=1
          Length = 634

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = -3

Query: 388 GLLKEIRDYCLNQKSDSIQRLMEHAKQ*LGMHAGSLAYSTERIVSTSTGQESTSEKNESG 209
           G ++E++D    +  D I+ ++E  +Q L   AGS  Y      +++  Q   S  + S 
Sbjct: 561 GFIQELKDALAAEDYDKIRSIIEQLQQAL-YAAGSSVYQQASAEASANAQAGPSSSSSSS 619

Query: 208 ESDDSL 191
             DD +
Sbjct: 620 SGDDDV 625


>sp|P50021|DNAK2_SYNE7 Chaperone protein dnaK2 OS=Synechococcus
           elongatus (strain PCC 7942) GN=dnaK2 PE=3 SV=2
          Length = 634

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = -3

Query: 388 GLLKEIRDYCLNQKSDSIQRLMEHAKQ*LGMHAGSLAYSTERIVSTSTGQESTSEKNESG 209
           G ++E++D    +  D I+ ++E  +Q L   AGS  Y      +++  Q   S  + S 
Sbjct: 561 GFIQELKDALAAEDYDKIKSIIEQLQQAL-YAAGSSVYQQASAEASANAQAGPSSSSSSS 619

Query: 208 ESDDSL 191
             DD +
Sbjct: 620 SGDDDV 625


>sp|Q75E72|MED16_ASHGO Mediator of RNA polymerase II transcription
           subunit 16 OS=Ashbya gossypii GN=SIN4 PE=3 SV=1
          Length = 938

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 4/105 (3%)
 Frame = +1

Query: 88  LIPFIGNPLMNLHLVPLGHRNLRMCYHLILQNLVTSCHLIPLIHSFHWWTLALL----RW 255
           LI  + NP+ N H + LG  +     HL+L+ ++   ++I LI  F   T  +L    R+
Sbjct: 680 LIMLVNNPMDNTHSLVLGILSCITTRHLMLKVILELKNMIGLITKFPETTYTVLNESSRF 739

Query: 256 ILSSP*NKPMSRHAFQVIV*HVP*VSE*SQTSGLDNSLESLLANH 390
           +  +  + P++   F+V +            + ++N   SLL +H
Sbjct: 740 LRKALGDSPVNLEKFEVFL------------NEINNKFLSLLDDH 772

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914401|Adiantum capillus-veneris mRNA, clone:
YMU001_000058_E04.
         (456 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B3DUT8|B3DUT8_METI4 Periplasmic divalent cation tolerance pro...    34   3.2  

>tr|B3DUT8|B3DUT8_METI4 Periplasmic divalent cation tolerance
           protein cutA OS=Methylacidiphilum infernorum (isolate
           V4) GN=cutA PE=4 SV=1
          Length = 104

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 13/22 (59%), Positives = 18/22 (81%), Gaps = 1/22 (4%)
 Frame = +1

Query: 172 ILQNLVTSC-HLIPLIHSFHWW 234
           +LQN V SC ++IP +HSF+WW
Sbjct: 23  LLQNRVASCINIIPQVHSFYWW 44