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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914402
Clone id YMU001_000058_E05
Library
Length 510
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000058_E05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TGATTGGCAATTTCGTCATCGACTTGTTGACCTAGGAAAAGAAGCCTTTCTCGATAAAGC
CGGTTGATCGGGATAGGTTCCCCCCCCCCGGAACCGTGTAGGTATTGTTGGAAACATACG
GCTCTAATGGCTTCCGCAAGAGGAAATAGGAGCAGGGTGGAGGCGCGGGAAAGGATGGAT
TTTTTCTACACCAAGTTTTCAATCCTGCCCAATTGGGGCAATCTCGCTTTTTCGTTCAAG
TTTGTCTGGCCCGTTTGTTTTGAACATCTTGAACTACGTTGCAACTGGCAGTTGGTGCAC
CGATTGTGCCAAATTCTTCCCCCCCGCACCAATTCATTTCTGTCCGACATTGAGGCCTTC
CTTCTAATACAAGGAATCCTTAGGTTCATTTACTACCCCGAAGGGGATAAATCTTGATCA
CTACTCGTACATATGGAACAAGTAGTTTTTCTCTCCCTCCATTTCATCTATTTTCACATC
TCATAGGTTCAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id A2T358
Definition sp|A2T358|CLPP_ANGEV ATP-dependent Clp protease proteolytic subunit OS=Angiopteris evecta
Align length 24
Score (bit) 47.4
E-value 4.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914402|Adiantum capillus-veneris mRNA, clone:
YMU001_000058_E05.
         (490 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A2T358|CLPP_ANGEV ATP-dependent Clp protease proteolytic subu...    47   4e-05
sp|Q8WHZ7|CLPP_PSINU ATP-dependent Clp protease proteolytic subu...    45   1e-04
sp|P12208|CLPP_MARPO ATP-dependent Clp protease proteolytic subu...    45   1e-04
sp|Q85FJ8|CLPP_ADICA ATP-dependent Clp protease proteolytic subu...    45   1e-04
sp|Q1ACH6|CLPP_CHAVU ATP-dependent Clp protease proteolytic subu...    44   4e-04
sp|Q32RU0|CLPP_STAPU ATP-dependent Clp protease proteolytic subu...    44   5e-04
sp|Q6YXM7|CLPP_PHYPA ATP-dependent Clp protease proteolytic subu...    44   5e-04
sp|Q85BZ1|CLPP_ANTFO ATP-dependent Clp protease proteolytic subu...    44   5e-04
sp|Q5SD28|CLPP_HUPLU ATP-dependent Clp protease proteolytic subu...    43   7e-04
sp|A6H5K6|CLPP_CYCTA ATP-dependent Clp protease proteolytic subu...    43   9e-04
sp|Q32RQ7|CLPP_ZYGCR ATP-dependent Clp protease proteolytic subu...    42   0.001
sp|Q09WZ2|CLPP_MORIN ATP-dependent Clp protease proteolytic subu...    42   0.001
sp|A4GGD0|CLPP_PHAVU ATP-dependent Clp protease proteolytic subu...    42   0.001
sp|Q8DJZ9|CLPP2_THEEB ATP-dependent Clp protease proteolytic sub...    41   0.003
sp|P12210|CLPP_TOBAC ATP-dependent Clp protease proteolytic subu...    41   0.003
sp|Q9M3K5|CLPP_SPIOL ATP-dependent Clp protease proteolytic subu...    41   0.003
sp|Q2PMR0|CLPP_SOYBN ATP-dependent Clp protease proteolytic subu...    41   0.003
sp|Q33C07|CLPP_NICTO ATP-dependent Clp protease proteolytic subu...    41   0.003
sp|Q3C1K4|CLPP_NICSY ATP-dependent Clp protease proteolytic subu...    41   0.003
sp|Q09FT6|CLPP_NANDO ATP-dependent Clp protease proteolytic subu...    41   0.003
sp|Q0G9J4|CLPP_LIRTU ATP-dependent Clp protease proteolytic subu...    41   0.003
sp|Q332V2|CLPP_LACSA ATP-dependent Clp protease proteolytic subu...    41   0.003
sp|Q1KXT4|CLPP_HELAN ATP-dependent Clp protease proteolytic subu...    41   0.003
sp|Q2L926|CLPP_GOSHI ATP-dependent Clp protease proteolytic subu...    41   0.003
sp|A0ZZ60|CLPP_GOSBA ATP-dependent Clp protease proteolytic subu...    41   0.003
sp|Q49KX3|CLPP_EUCGG ATP-dependent Clp protease proteolytic subu...    41   0.003
sp|A6MMN2|CLPP_DIOEL ATP-dependent Clp protease proteolytic subu...    41   0.003
sp|Q0G9T7|CLPP_DAUCA ATP-dependent Clp protease proteolytic subu...    41   0.003
sp|A6MME7|CLPP_CHLSC ATP-dependent Clp protease proteolytic subu...    41   0.003
sp|Q9MUV8|CLPP_MESVI ATP-dependent Clp protease proteolytic subu...    40   0.006

>sp|A2T358|CLPP_ANGEV ATP-dependent Clp protease proteolytic
          subunit OS=Angiopteris evecta GN=clpP PE=3 SV=1
          Length = 197

 Score = 47.4 bits (111), Expect = 4e-05
 Identities = 21/24 (87%), Positives = 23/24 (95%)
 Frame = -3

Query: 74 IPINRLYRERLLFLGQQVDDEIAN 3
          + +NRLYRERLLFLGQQVDDEIAN
Sbjct: 21 VDVNRLYRERLLFLGQQVDDEIAN 44


>sp|Q8WHZ7|CLPP_PSINU ATP-dependent Clp protease proteolytic
          subunit OS=Psilotum nudum GN=clpP PE=3 SV=1
          Length = 198

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 21/21 (100%), Positives = 21/21 (100%)
 Frame = -3

Query: 65 NRLYRERLLFLGQQVDDEIAN 3
          NRLYRERLLFLGQQVDDEIAN
Sbjct: 25 NRLYRERLLFLGQQVDDEIAN 45


>sp|P12208|CLPP_MARPO ATP-dependent Clp protease proteolytic
          subunit OS=Marchantia polymorpha GN=clpP PE=3 SV=1
          Length = 203

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 21/21 (100%), Positives = 21/21 (100%)
 Frame = -3

Query: 65 NRLYRERLLFLGQQVDDEIAN 3
          NRLYRERLLFLGQQVDDEIAN
Sbjct: 25 NRLYRERLLFLGQQVDDEIAN 45


>sp|Q85FJ8|CLPP_ADICA ATP-dependent Clp protease proteolytic
          subunit OS=Adiantum capillus-veneris GN=clpP PE=2 SV=2
          Length = 200

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 21/21 (100%), Positives = 21/21 (100%)
 Frame = -3

Query: 65 NRLYRERLLFLGQQVDDEIAN 3
          NRLYRERLLFLGQQVDDEIAN
Sbjct: 25 NRLYRERLLFLGQQVDDEIAN 45


>sp|Q1ACH6|CLPP_CHAVU ATP-dependent Clp protease proteolytic
          subunit OS=Chara vulgaris GN=clpP PE=3 SV=1
          Length = 219

 Score = 43.9 bits (102), Expect = 4e-04
 Identities = 20/21 (95%), Positives = 21/21 (100%)
 Frame = -3

Query: 65 NRLYRERLLFLGQQVDDEIAN 3
          NRLYRERLLFLGQ+VDDEIAN
Sbjct: 25 NRLYRERLLFLGQRVDDEIAN 45


>sp|Q32RU0|CLPP_STAPU ATP-dependent Clp protease proteolytic
          subunit OS=Staurastrum punctulatum GN=clpP PE=3 SV=1
          Length = 201

 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 20/21 (95%), Positives = 20/21 (95%)
 Frame = -3

Query: 65 NRLYRERLLFLGQQVDDEIAN 3
          NRLYRERLLFLGQ VDDEIAN
Sbjct: 25 NRLYRERLLFLGQNVDDEIAN 45


>sp|Q6YXM7|CLPP_PHYPA ATP-dependent Clp protease proteolytic
          subunit OS=Physcomitrella patens GN=clpP PE=3 SV=1
          Length = 199

 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 20/21 (95%), Positives = 20/21 (95%)
 Frame = -3

Query: 65 NRLYRERLLFLGQQVDDEIAN 3
          NRLYRERLLFLGQ VDDEIAN
Sbjct: 26 NRLYRERLLFLGQHVDDEIAN 46


>sp|Q85BZ1|CLPP_ANTFO ATP-dependent Clp protease proteolytic
          subunit OS=Anthoceros formosae GN=clpP PE=2 SV=1
          Length = 204

 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 20/21 (95%), Positives = 20/21 (95%)
 Frame = -3

Query: 65 NRLYRERLLFLGQQVDDEIAN 3
          NRLYRERLLFLGQ VDDEIAN
Sbjct: 25 NRLYRERLLFLGQHVDDEIAN 45


>sp|Q5SD28|CLPP_HUPLU ATP-dependent Clp protease proteolytic
          subunit OS=Huperzia lucidula GN=clpP PE=3 SV=1
          Length = 209

 Score = 43.1 bits (100), Expect = 7e-04
 Identities = 19/21 (90%), Positives = 21/21 (100%)
 Frame = -3

Query: 65 NRLYRERLLFLGQQVDDEIAN 3
          NRL+RERLLFLGQQVDDE+AN
Sbjct: 25 NRLFRERLLFLGQQVDDELAN 45


>sp|A6H5K6|CLPP_CYCTA ATP-dependent Clp protease proteolytic
          subunit OS=Cycas taitungensis GN=clpP PE=3 SV=1
          Length = 195

 Score = 42.7 bits (99), Expect = 9e-04
 Identities = 20/21 (95%), Positives = 20/21 (95%)
 Frame = -3

Query: 65 NRLYRERLLFLGQQVDDEIAN 3
          NRLYRERLLF GQQVDDEIAN
Sbjct: 18 NRLYRERLLFPGQQVDDEIAN 38
tr_hit_id B0YPQ2
Definition tr|B0YPQ2|B0YPQ2_ANEMR Clp protease proteolytic subunit OS=Aneura mirabilis
Align length 24
Score (bit) 47.8
E-value 0.0003
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914402|Adiantum capillus-veneris mRNA, clone:
YMU001_000058_E05.
         (490 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B0YPQ2|B0YPQ2_ANEMR Clp protease proteolytic subunit OS=Aneur...    48   3e-04
tr|B8C929|B8C929_THAPS Catalytic subunit of clp protease OS=Thal...    46   8e-04
tr|Q4FGH5|Q4FGH5_GINBI ATP-dependent Clp protease proteolytic su...    45   0.001
tr|A7Y7Q2|A7Y7Q2_PRUDU ATP-dependent Clp protease proteolytic su...    45   0.001
tr|B1NWH5|B1NWH5_MANES ATP-dependent Clp protease proteolytic su...    44   0.004
tr|B3IWH2|B3IWH2_TAKLE ATP-dependent Clp protease proteolytic su...    44   0.005
tr|Q4FGH2|Q4FGH2_TYPLA ATP-dependent Clp protease proteolytic su...    43   0.009
tr|Q4FGH1|Q4FGH1_9ASPA ATP-dependent Clp protease proteolytic su...    43   0.009
tr|A9QB13|A9QB13_9SPER ATP-dependent Clp protease proteolytic su...    43   0.009
tr|Q98RU2|Q98RU2_GUITH ATP-dependent Clp protease proteolytic su...    42   0.012
tr|Q7XY37|Q7XY37_GRIJA ATP-dependent Clp protease proteolytic su...    42   0.012
tr|A9BKW1|A9BKW1_9CRYP ATP-dependent Clp protease proteolytic su...    42   0.012
tr|B8HPM8|B8HPM8_9CHRO Endopeptidase Clp OS=Cyanothece sp. PCC 7...    41   0.026
tr|A7R9C0|A7R9C0_VITVI ATP-dependent Clp protease proteolytic su...    41   0.026
tr|Q06R40|Q06R40_9LAMI ATP-dependent protease catalytic subunit ...    41   0.034
tr|B6RRF4|B6RRF4_9CARY ATP-dependent protease proteolytic subuni...    41   0.034
tr|B4Y202|B4Y202_9CARY ClpP (Fragment) OS=Petrocoptis pyrenaica ...    41   0.034
tr|B4Y1Z9|B4Y1Z9_VISVU ClpP (Fragment) OS=Viscaria vulgaris GN=c...    41   0.034
tr|B4Y1Z6|B4Y1Z6_9CARY ClpP (Fragment) OS=Atocion rupestre GN=cl...    41   0.034
tr|B4Y1Z3|B4Y1Z3_AGRGI ClpP (Fragment) OS=Agrostemma githago GN=...    41   0.034
tr|B2LML8|B2LML8_GUIAB Clp protease proteolytic subunit OS=Guizo...    41   0.034
tr|B1A960|B1A960_CARPA ATP-dependent Clp protease proteolytic su...    41   0.034
tr|B0LP59|B0LP59_9CARY ATP-dependent Clp protease proteolytic su...    41   0.034
tr|B0LP35|B0LP35_9CARY ATP-dependent Clp protease proteolytic su...    41   0.034
tr|B0LP17|B0LP17_9CARY ATP-dependent protease proteolytic subuni...    41   0.034
tr|B0LNZ9|B0LNZ9_9CARY ATP-dependent Clp protease proteolytic su...    41   0.034
tr|B0LNV4|B0LNV4_9CARY ATP-dependent Clp protease proteolytic su...    41   0.034
tr|B0LNT4|B0LNT4_9CARY ATP-dependent Clp protease proteolytic su...    41   0.034
tr|B0LNR2|B0LNR2_SILLA ATP-dependent Clp protease proteolytic su...    41   0.034
tr|B0LNM0|B0LNM0_9CARY ATP-dependent Clp protease proteolytic su...    41   0.034

>tr|B0YPQ2|B0YPQ2_ANEMR Clp protease proteolytic subunit OS=Aneura
          mirabilis GN=clpP PE=4 SV=1
          Length = 203

 Score = 47.8 bits (112), Expect = 3e-04
 Identities = 22/24 (91%), Positives = 23/24 (95%)
 Frame = -3

Query: 74 IPINRLYRERLLFLGQQVDDEIAN 3
          I +NRLYRERLLFLGQQVDDEIAN
Sbjct: 21 IDVNRLYRERLLFLGQQVDDEIAN 44


>tr|B8C929|B8C929_THAPS Catalytic subunit of clp protease
           OS=Thalassiosira pseudonana CCMP1335 GN=clpP PE=4 SV=1
          Length = 201

 Score = 46.2 bits (108), Expect = 8e-04
 Identities = 21/32 (65%), Positives = 27/32 (84%), Gaps = 1/32 (3%)
 Frame = -3

Query: 95  GSGGGEPIPI-NRLYRERLLFLGQQVDDEIAN 3
           GS GGE + I NRLYRER++FLG ++DDE+AN
Sbjct: 14  GSSGGEWVDIYNRLYRERIIFLGSEIDDELAN 45


>tr|Q4FGH5|Q4FGH5_GINBI ATP-dependent Clp protease proteolytic
          subunit (Fragment) OS=Ginkgo biloba GN=clpP PE=3 SV=1
          Length = 201

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 20/24 (83%), Positives = 23/24 (95%)
 Frame = -3

Query: 74 IPINRLYRERLLFLGQQVDDEIAN 3
          + +NRL+RERLLFLGQQVDDEIAN
Sbjct: 21 VDVNRLHRERLLFLGQQVDDEIAN 44


>tr|A7Y7Q2|A7Y7Q2_PRUDU ATP-dependent Clp protease proteolytic
          subunit (Fragment) OS=Prunus dulcis PE=2 SV=1
          Length = 111

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 23/30 (76%), Positives = 24/30 (80%)
 Frame = -3

Query: 92 SGGGEPIPINRLYRERLLFLGQQVDDEIAN 3
          S G   IPINRLYRERLLFLGQ VD EI+N
Sbjct: 3  SKGYNFIPINRLYRERLLFLGQGVDSEISN 32


>tr|B1NWH5|B1NWH5_MANES ATP-dependent Clp protease proteolytic
          subunit OS=Manihot esculenta GN=clpP PE=3 SV=1
          Length = 195

 Score = 43.9 bits (102), Expect = 0.004
 Identities = 21/24 (87%), Positives = 21/24 (87%)
 Frame = -3

Query: 74 IPINRLYRERLLFLGQQVDDEIAN 3
          I INRLYRERLLFLGQ VD EIAN
Sbjct: 21 IDINRLYRERLLFLGQDVDSEIAN 44


>tr|B3IWH2|B3IWH2_TAKLE ATP-dependent Clp protease proteolytic
          subunit OS=Takakia lepidozioides GN=clpP PE=2 SV=1
          Length = 204

 Score = 43.5 bits (101), Expect = 0.005
 Identities = 20/21 (95%), Positives = 20/21 (95%)
 Frame = -3

Query: 65 NRLYRERLLFLGQQVDDEIAN 3
          NRLYRERLLFLGQ VDDEIAN
Sbjct: 25 NRLYRERLLFLGQHVDDEIAN 45


>tr|Q4FGH2|Q4FGH2_TYPLA ATP-dependent Clp protease proteolytic
          subunit (Fragment) OS=Typha latifolia GN=clpP PE=3 SV=1
          Length = 195

 Score = 42.7 bits (99), Expect = 0.009
 Identities = 18/24 (75%), Positives = 22/24 (91%)
 Frame = -3

Query: 74 IPINRLYRERLLFLGQQVDDEIAN 3
          + +NRLYRERLLFLGQ+VD EI+N
Sbjct: 21 VDVNRLYRERLLFLGQEVDSEISN 44


>tr|Q4FGH1|Q4FGH1_9ASPA ATP-dependent Clp protease proteolytic
          subunit (Fragment) OS=Yucca schidigera GN=clpP PE=3
          SV=1
          Length = 195

 Score = 42.7 bits (99), Expect = 0.009
 Identities = 18/24 (75%), Positives = 22/24 (91%)
 Frame = -3

Query: 74 IPINRLYRERLLFLGQQVDDEIAN 3
          + +NRLYRERLLFLGQ+VD EI+N
Sbjct: 21 VDVNRLYRERLLFLGQEVDSEISN 44


>tr|A9QB13|A9QB13_9SPER ATP-dependent Clp protease proteolytic
          subunit (Fragment) OS=Cycas micronesica GN=clpP PE=3
          SV=1
          Length = 202

 Score = 42.7 bits (99), Expect = 0.009
 Identities = 20/21 (95%), Positives = 20/21 (95%)
 Frame = -3

Query: 65 NRLYRERLLFLGQQVDDEIAN 3
          NRLYRERLLF GQQVDDEIAN
Sbjct: 25 NRLYRERLLFPGQQVDDEIAN 45


>tr|Q98RU2|Q98RU2_GUITH ATP-dependent Clp protease proteolytic
           subunit OS=Guillardia theta GN=clpP2 PE=3 SV=1
          Length = 233

 Score = 42.4 bits (98), Expect = 0.012
 Identities = 17/21 (80%), Positives = 21/21 (100%)
 Frame = -3

Query: 65  NRLYRERLLFLGQQVDDEIAN 3
           NRLYRER++FLGQ++DDEIAN
Sbjct: 57  NRLYRERIIFLGQEIDDEIAN 77