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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914404
Clone id YMU001_000058_E07
Library
Length 331
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000058_E07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ACTGTGCATCAATCTTGAAAAGTGCAATTTTGATGTCCAATAGTTTATTTCATGCAACCT
AGCAGCTAATCTTTGAATCTTCCTGTCTTCCGCAAGGACTGCTAGCCCATTGAATGTTAA
GGTTGATGAATCATGTAATGCATCCTCGGAGTCTCCTTCCTCAAGGACAGACAGATCGCC
TCTTCGTACACCAAGAATCCTTTCTTTAACCTCTCTTGAGAAAGGGGCCTTCCGTTGTTT
AACTACTCCAATCCCTTTCATCCAAATCTCACGTCTCTTTGGCACTTCTTGAATCTCATC
ATCTACAAACTTGTCTATTTCTGCTGTCGGC
■■Homology search results ■■ -
sp_hit_id O45379
Definition sp|O45379|ARL3_CAEEL ADP-ribosylation factor-like protein 3 OS=Caenorhabditis elegans
Align length 55
Score (bit) 33.5
E-value 0.34
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914404|Adiantum capillus-veneris mRNA, clone:
YMU001_000058_E07.
         (331 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O45379|ARL3_CAEEL ADP-ribosylation factor-like protein 3 OS=C...    33   0.34 
sp|Q9SA76|PPR64_ARATH Pentatricopeptide repeat-containing protei...    30   2.9  
sp|P43892|KCY1_HAEIN Cytidylate kinase 1 OS=Haemophilus influenz...    30   3.8  
sp|Q0BGD7|RGMG1_BURCM Putative ribose/galactose/methyl galactosi...    29   8.4  
sp|P37278|ATCL_SYNE7 Probable calcium-transporting ATPase OS=Syn...    29   8.4  

>sp|O45379|ARL3_CAEEL ADP-ribosylation factor-like protein 3
           OS=Caenorhabditis elegans GN=arl-3 PE=1 SV=1
          Length = 184

 Score = 33.5 bits (75), Expect = 0.34
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = -2

Query: 252 IGVVKQRKAPFSREVKERILGV-RRGDLSVLEEGDSEDALHDSSTLTFNGLAVLA 91
           I V+K  K+P  RE++  +LG+   G  ++L++  SED  H + T  FN   V A
Sbjct: 4   IDVLKSFKSPSGREIRILLLGLDNAGKTTILKQLSSEDVQHVTPTKGFNVKTVAA 58


>sp|Q9SA76|PPR64_ARATH Pentatricopeptide repeat-containing protein
           At1g30610, chloroplastic OS=Arabidopsis thaliana
           GN=EMB2279 PE=2 SV=1
          Length = 1006

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 17/33 (51%), Positives = 24/33 (72%)
 Frame = -2

Query: 111 NGLAVLAEDRKIQRLAARLHEINYWTSKLHFSR 13
           +GL +LAE+R+I+RLA   HEI   +SKL  +R
Sbjct: 361 DGLDLLAEERRIERLANERHEIR--SSKLSGTR 391


>sp|P43892|KCY1_HAEIN Cytidylate kinase 1 OS=Haemophilus influenzae
           GN=cmk1 PE=3 SV=1
          Length = 231

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 22/74 (29%), Positives = 38/74 (51%)
 Frame = -2

Query: 330 PTAEIDKFVDDEIQEVPKRREIWMKGIGVVKQRKAPFSREVKERILGVRRGDLSVLEEGD 151
           P A++  F+D   +E  KRR   ++  G +    A    E+KER    R  +++ L+  D
Sbjct: 134 PNAQVKLFLDASAEERAKRRYKQLQNKG-INGNFAQILAEIKERDFRDRNREVAPLKPAD 192

Query: 150 SEDALHDSSTLTFN 109
            +  L DS+TL+ +
Sbjct: 193 -DALLLDSTTLSID 205


>sp|Q0BGD7|RGMG1_BURCM Putative ribose/galactose/methyl galactoside
           import ATP-binding protein 1 OS=Burkholderia ambifaria
           (strain ATCC BAA-244 / AMMD) GN=Bamb_1228 PE=3 SV=1
          Length = 517

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -2

Query: 213 EVKERILGVRRGDLSVLEEGDSEDALHDSSTLTFNGLAVLAEDRKIQRLA 64
           EV   I G  R D   +  GD+   ++       +G+A L+EDRK   LA
Sbjct: 312 EVARAIFGAERPDAGSILLGDTPVEINSPREAIRHGIAYLSEDRKKDGLA 361


>sp|P37278|ATCL_SYNE7 Probable calcium-transporting ATPase
           OS=Synechococcus elongatus (strain PCC 7942) GN=pacL
           PE=3 SV=2
          Length = 926

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
 Frame = -2

Query: 261 MKGIGVVKQRKAPFSREVKERILGVRRGDLSVLEEGDSEDA---LHDSSTLTFNGLAVLA 91
           +KG+     R    +R+ +  + G+  GDL +LE GD   A   L +S+ L     A+  
Sbjct: 129 LKGMAAPLVRVRRDNRDQEIPVAGLVPGDLILLEAGDQVPADARLVESANLQVKESALTG 188

Query: 90  EDRKIQRLA 64
           E   +Q+LA
Sbjct: 189 EAEAVQKLA 197
tr_hit_id B3MAN7
Definition tr|B3MAN7|B3MAN7_DROAN GF20137 OS=Drosophila ananassae
Align length 43
Score (bit) 34.3
E-value 3.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914404|Adiantum capillus-veneris mRNA, clone:
YMU001_000058_E07.
         (331 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B3MAN7|B3MAN7_DROAN GF20137 OS=Drosophila ananassae GN=GF2013...    34   3.2  
tr|A9SN69|A9SN69_PHYPA Predicted protein OS=Physcomitrella paten...    34   4.2  
tr|A3GGN1|A3GGN1_PICST Predicted protein OS=Pichia stipitis GN=P...    33   5.5  
tr|Q64AU3|Q64AU3_9ARCH Putative uncharacterized protein OS=uncul...    33   5.5  
tr|A1SYC9|A1SYC9_PSYIN ABC transporter for sugar (Aldose) ATP-bi...    33   9.4  
tr|Q5UZ31|Q5UZ31_HALMA ATP-dependent RNA helicase homolog eIF-4A...    33   9.4  

>tr|B3MAN7|B3MAN7_DROAN GF20137 OS=Drosophila ananassae GN=GF20137
           PE=4 SV=1
          Length = 632

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = -2

Query: 171 SVLEEGDSEDALHDSSTLTFNGLAVLAEDRKIQRLAARLHEIN 43
           ++LEE D + +LH S  +T NG  V+A   K +R++   H +N
Sbjct: 271 NILEEYDLKSSLHKSVIVTDNGANVVAAFNKYKRISCACHNLN 313


>tr|A9SN69|A9SN69_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_81652 PE=4 SV=1
          Length = 799

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 20/50 (40%), Positives = 24/50 (48%)
 Frame = -2

Query: 306 VDDEIQEVPKRREIWMKGIGVVKQRKAPFSREVKERILGVRRGDLSVLEE 157
           VDDEI    K  E W   +  +++ K P  RE   RI    RG   VLEE
Sbjct: 422 VDDEIGGSMKTSEFWASAVSTIQEGKLP--REALLRIAATIRGRTGVLEE 469


>tr|A3GGN1|A3GGN1_PICST Predicted protein OS=Pichia stipitis
           GN=PICST_52580 PE=4 SV=1
          Length = 551

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
 Frame = -2

Query: 207 KERILGVRRGDLSVLEEGDSEDALHDSSTLTFNGLAV-----LAEDRKIQRLAARLHEIN 43
           +ER +G + GD+   EEGDSE++ +  +  + NG  V     L  D+  +RL +   E+N
Sbjct: 389 EERFVG-KNGDIKEDEEGDSENSNNTITENSANGSPVKDEDELVSDKNKKRLVSVSLELN 447

Query: 42  YWTSKLHFSRL 10
              ++LH + L
Sbjct: 448 DEAARLHLATL 458


>tr|Q64AU3|Q64AU3_9ARCH Putative uncharacterized protein
           OS=uncultured archaeon GZfos28G7 GN=GZ28G7_47 PE=4 SV=1
          Length = 431

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
 Frame = -2

Query: 294 IQEVPKRREIWMKGIGVVKQRKAPFSREV---KERILGVRRGDLSVLEEGDSEDALHDSS 124
           ++E+  +RE+ +KG   +K  ++ FSR      +R  G+RRGD+  LE+G    A   + 
Sbjct: 288 VEELKGKREVKVKGGKKIKVIRS-FSRNAILDTDRKYGLRRGDVVFLEDGSGGGA-STAE 345

Query: 123 TLTFNGLAVLAEDRKIQRLAA 61
            L   G+A +   +++   AA
Sbjct: 346 LLASKGVAAVIYGKELSHFAA 366


>tr|A1SYC9|A1SYC9_PSYIN ABC transporter for sugar (Aldose)
           ATP-binding protein OS=Psychromonas ingrahamii (strain
           37) GN=Ping_2787 PE=3 SV=1
          Length = 495

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = -2

Query: 213 EVKERILGVRRGDLSVLEEGDSEDALHDSSTLTFNGLAVLAEDRKIQRLAARL 55
           EV E I G+R+ D   +   D    ++ S     NG+A++ EDRK Q L   +
Sbjct: 298 EVAEAIFGIRKIDSGEIYINDQLADINSSEKAVKNGIALVPEDRKEQGLVLEM 350


>tr|Q5UZ31|Q5UZ31_HALMA ATP-dependent RNA helicase homolog eIF-4A
           OS=Haloarcula marismortui GN=eif4A PE=4 SV=1
          Length = 852

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 23/99 (23%), Positives = 45/99 (45%)
 Frame = -2

Query: 306 VDDEIQEVPKRREIWMKGIGVVKQRKAPFSREVKERILGVRRGDLSVLEEGDSEDALHDS 127
           + D I EV K R   +K +GV  +  A  S    ++I            +G   D +++ 
Sbjct: 231 IRDAINEVIKDRLSQLKELGVTNKSSADISEREIQQI------------QGQLRDLMNND 278

Query: 126 STLTFNGLAVLAEDRKIQRLAARLHEINYWTSKLHFSRL 10
            +  + G+++LAE RK++     +   +  + + +F RL
Sbjct: 279 QSEGYQGMSLLAEIRKLRTAVTYVETQSVESLRRYFERL 317