NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914419
Clone id YMU001_000058_F11
Library
Length 433
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000058_F11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GAGAATAAAAGCACCATATTCTCTTACCTTTCTCCAAGCATGGCATAGAGGAGATCCTTT
GTGGTGAGTTTCCTCCTCCTGGATTTTGACCAATGTAGCTCTAAGCGGGTCATGGCGGGT
GTTCTTTTGGGTACAAGCACGGTACACGTGCCCTTGCTCGCCGCACTTGAAACAACGGTT
ATCCTTGCGATAACGCTCAAGCTCTTCAGGAGAGAGTTTGTTTTTGCCTTTGTAAACTCC
CTTCTCCTTAGCTTTGTGGAATTGCCCTTAGGAGACTTTTGGACATTGTCCTTCCCCTTA
GGCTCATTGGAACCCTTGTTTACCGTGGGCTCAGAATATCCTTTAGCCCCTGTTTGGAAA
TTGATTCGAGAAGCCACCATAGTATGGTGTATAACCGCGGATATGGTGTGTGGCCTTTGG
GAGTTGACATACT
■■Homology search results ■■ -
sp_hit_id Q82851
Definition sp|Q82851|POL_JEMBR Gag-Pol polyprotein OS=Jembrana disease virus
Align length 56
Score (bit) 38.5
E-value 0.012
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914419|Adiantum capillus-veneris mRNA, clone:
YMU001_000058_F11.
         (433 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q82851|POL_JEMBR Gag-Pol polyprotein OS=Jembrana disease viru...    39   0.012
sp|Q82850|GAG_JEMBR Gag polyprotein OS=Jembrana disease virus GN...    39   0.012
sp|Q7TN75|PEG10_MOUSE Retrotransposon-derived protein PEG10 OS=M...    38   0.021
sp|Q38896|GRP2B_ARATH Glycine-rich protein 2b OS=Arabidopsis tha...    36   0.060
sp|Q86TG7|PEG10_HUMAN Retrotransposon-derived protein PEG10 OS=H...    34   0.23 
sp|Q6PEW1|ZCH12_HUMAN Zinc finger CCHC domain-containing protein...    33   0.51 
sp|P44893|FRDB_HAEIN Fumarate reductase iron-sulfur subunit OS=H...    32   0.86 
sp|Q9SD84|E13L3_ARATH Glucan endo-1,3-beta-glucosidase-like prot...    32   1.1  
sp|Q5TAX3|ZCH11_HUMAN Zinc finger CCHC domain-containing protein...    32   1.1  
sp|Q8JZW8|PNMA3_MOUSE Paraneoplastic antigen Ma3 homolog OS=Mus ...    32   1.1  
sp|Q04832|HEXP_LEIMA DNA-binding protein HEXBP OS=Leishmania maj...    32   1.1  
sp|Q5BLK4|ZCHC6_MOUSE Zinc finger CCHC domain-containing protein...    32   1.5  
sp|Q5VYS8|ZCHC6_HUMAN Zinc finger CCHC domain-containing protein...    32   1.5  
sp|Q5HZA3|ZCH12_RAT Zinc finger CCHC domain-containing protein 1...    32   1.5  
sp|Q9CZA5|ZCH12_MOUSE Zinc finger CCHC domain-containing protein...    32   1.5  
sp|P27536|POST_XENLA Posterior protein OS=Xenopus laevis GN=po P...    32   1.5  
sp|P20875|POL_HV1JR Gag-Pol polyprotein OS=Human immunodeficienc...    32   1.5  
sp|Q9QBY3|POL_HV196 Gag-Pol polyprotein OS=Human immunodeficienc...    32   1.5  
sp|P19560|POL_BIV29 Gag-Pol polyprotein OS=Bovine immunodeficien...    32   1.5  
sp|P20873|GAG_HV1JR Gag polyprotein OS=Human immunodeficiency vi...    32   1.5  
sp|Q9QBY4|GAG_HV196 Gag polyprotein OS=Human immunodeficiency vi...    32   1.5  
sp|P19558|GAG_BIV29 Gag polyprotein OS=Bovine immunodeficiency v...    32   1.5  
sp|Q9NUD5|ZCHC3_HUMAN Zinc finger CCHC domain-containing protein...    31   1.9  
sp|P14074|PRO_HTL1C Gag-Pro polyprotein OS=Human T-cell leukemia...    31   1.9  
sp|P10274|PRO_HTL1A Gag-Pro polyprotein OS=Human T-cell leukemia...    31   1.9  
sp|O93215|POL_HV190 Gag-Pol polyprotein OS=Human immunodeficienc...    31   1.9  
sp|P14078|POL_HTL1C Gag-Pro-Pol polyprotein OS=Human T-cell leuk...    31   1.9  
sp|P03362|POL_HTL1A Gag-Pro-Pol polyprotein OS=Human T-cell leuk...    31   1.9  
sp|P27484|GRP2_NICSY Glycine-rich protein 2 OS=Nicotiana sylvest...    31   1.9  
sp|O93182|GAG_HV190 Gag polyprotein OS=Human immunodeficiency vi...    31   1.9  

>sp|Q82851|POL_JEMBR Gag-Pol polyprotein OS=Jembrana disease virus
           GN=gag-pol PE=3 SV=1
          Length = 1432

 Score = 38.5 bits (88), Expect = 0.012
 Identities = 20/56 (35%), Positives = 25/56 (44%)
 Frame = -2

Query: 210 PEELERYRKDNRCFKCGEQGHVYRACTQKNTRHDPLRATLVKIQEEETHHKGSPLC 43
           P  + R  K+ +CFKCG+ GH+ R C  KN       A L     EE    G   C
Sbjct: 376 PGHIRRDCKNQKCFKCGKPGHLQRNCKSKNR-----EALLCPFWAEERIPSGEDFC 426


>sp|Q82850|GAG_JEMBR Gag polyprotein OS=Jembrana disease virus
           GN=gag PE=3 SV=1
          Length = 436

 Score = 38.5 bits (88), Expect = 0.012
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -2

Query: 210 PEELERYRKDNRCFKCGEQGHVYRACTQKNTR 115
           P  + R  K+ +CFKCG+ GH+ R C  KN R
Sbjct: 376 PGHIRRDCKNQKCFKCGKPGHLQRNCKSKNGR 407


>sp|Q7TN75|PEG10_MOUSE Retrotransposon-derived protein PEG10 OS=Mus
           musculus GN=Peg10 PE=1 SV=2
          Length = 958

 Score = 37.7 bits (86), Expect = 0.021
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = -2

Query: 219 KLSPEELERYRKDNRCFKCGEQGHVYRACTQKNTRHDP 106
           +LS EE ER RK N C  CG  GH    C  K +++ P
Sbjct: 331 RLSKEEKERRRKMNLCLYCGNGGHFADTCPAKASKNSP 368


>sp|Q38896|GRP2B_ARATH Glycine-rich protein 2b OS=Arabidopsis
           thaliana GN=GRP2B PE=2 SV=1
          Length = 201

 Score = 36.2 bits (82), Expect = 0.060
 Identities = 13/19 (68%), Positives = 15/19 (78%)
 Frame = -2

Query: 183 DNRCFKCGEQGHVYRACTQ 127
           DN CFKCGE GH+ R C+Q
Sbjct: 135 DNSCFKCGEPGHMARECSQ 153



 Score = 28.9 bits (63), Expect = 9.6
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -2

Query: 174 CFKCGEQGHVYRACTQKNTR 115
           C+ CGE GH  R CT    R
Sbjct: 182 CYSCGESGHFARDCTSGGAR 201


>sp|Q86TG7|PEG10_HUMAN Retrotransposon-derived protein PEG10 OS=Homo
           sapiens GN=PEG10 PE=1 SV=2
          Length = 708

 Score = 34.3 bits (77), Expect = 0.23
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -2

Query: 219 KLSPEELERYRKDNRCFKCGEQGHVYRACTQKNTRHDP 106
           +L+ EE ER RK N C  CG  GH    C  K ++  P
Sbjct: 280 RLTQEEKERRRKLNLCLYCGTGGHYADNCPAKASKSSP 317


>sp|Q6PEW1|ZCH12_HUMAN Zinc finger CCHC domain-containing protein 12
           OS=Homo sapiens GN=ZCCHC12 PE=2 SV=2
          Length = 402

 Score = 33.1 bits (74), Expect = 0.51
 Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 3/72 (4%)
 Frame = -2

Query: 282 PKVS*GQFHKAKEKGVYKGKNKLSPEELERYRKDN---RCFKCGEQGHVYRACTQKNTRH 112
           P  S  QF        YK      P E+ R RK     RC  CGE+GH    C  ++ + 
Sbjct: 311 PHNSRAQFPSTSGGSGYKNNG---PGEMRRARKRKHTIRCSYCGEEGHSKETCDNESDKA 367

Query: 111 DPLRATLVKIQE 76
                 ++ +QE
Sbjct: 368 QVFENLIITLQE 379


>sp|P44893|FRDB_HAEIN Fumarate reductase iron-sulfur subunit
           OS=Haemophilus influenzae GN=frdB PE=3 SV=1
          Length = 256

 Score = 32.3 bits (72), Expect = 0.86
 Identities = 18/47 (38%), Positives = 26/47 (55%)
 Frame = -2

Query: 267 GQFHKAKEKGVYKGKNKLSPEELERYRKDNRCFKCGEQGHVYRACTQ 127
           G+ H +KE  V   + K +P +LE+YR+ + C  C   G  Y AC Q
Sbjct: 131 GKPHPSKELQV--SRTKQTPAQLEKYRQFSMCINC---GLCYAACPQ 172


>sp|Q9SD84|E13L3_ARATH Glucan endo-1,3-beta-glucosidase-like protein
           3 OS=Arabidopsis thaliana GN=At5g08000 PE=1 SV=1
          Length = 194

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 353 TGAKGYSEPTVNKGSNEPKGKDNVQKSPKGNS 258
           +G+ G    TV  G N PKG +++   P GNS
Sbjct: 109 SGSSGSGSTTVTPGKNSPKGSNSITTFPGGNS 140


>sp|Q5TAX3|ZCH11_HUMAN Zinc finger CCHC domain-containing protein 11
            OS=Homo sapiens GN=ZCCHC11 PE=1 SV=3
          Length = 1644

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
 Frame = -2

Query: 225  KNKLSPEELERYR-----KDNRCFKCGEQGHVYRACTQ 127
            ++ L P +L   R     +D RCF CG+ GHV R C +
Sbjct: 1337 RDVLDPRDLHDTRDFRDPRDLRCFICGDAGHVRRECPE 1374


>sp|Q8JZW8|PNMA3_MOUSE Paraneoplastic antigen Ma3 homolog OS=Mus
           musculus GN=Pnma3 PE=2 SV=1
          Length = 466

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = -2

Query: 183 DNRCFKCGEQGHVYRACTQKNTRHDPLRATLVKIQEEETHHKGSPLCHAWRK 28
           D  C+ CGE GH+   C       +P   TLVK + +    KG+    AW K
Sbjct: 414 DTFCYSCGEDGHIRVHC------FNPSNRTLVKQKRQAAMEKGN-RSWAWEK 458
tr_hit_id A7EW22
Definition tr|A7EW22|A7EW22_SCLS1 Putative uncharacterized protein OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1)
Align length 38
Score (bit) 47.0
E-value 0.0005
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914419|Adiantum capillus-veneris mRNA, clone:
YMU001_000058_F11.
         (433 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7EW22|A7EW22_SCLS1 Putative uncharacterized protein OS=Scler...    47   5e-04
tr|A7K6N0|A7K6N0_SCLS1 Putative uncharacterized protein OS=Scler...    46   8e-04
tr|A7F8U4|A7F8U4_SCLS1 Putative uncharacterized protein OS=Scler...    46   8e-04
tr|A7EM90|A7EM90_SCLS1 Putative uncharacterized protein OS=Scler...    46   8e-04
tr|A7EJH2|A7EJH2_SCLS1 Putative uncharacterized protein OS=Scler...    46   8e-04
tr|A7EDE5|A7EDE5_SCLS1 Putative uncharacterized protein OS=Scler...    44   0.003
tr|A7EP32|A7EP32_SCLS1 Putative uncharacterized protein OS=Scler...    43   0.009
tr|A7EG17|A7EG17_SCLS1 Putative uncharacterized protein OS=Scler...    43   0.009
tr|A7E6K6|A7E6K6_SCLS1 Putative uncharacterized protein OS=Scler...    43   0.009
tr|A7EEI4|A7EEI4_SCLS1 Putative uncharacterized protein OS=Scler...    42   0.015
tr|A8P9K7|A8P9K7_COPC7 Putative uncharacterized protein OS=Copri...    41   0.034
tr|A8PIS6|A8PIS6_COPC7 Predicted protein OS=Coprinopsis cinerea ...    40   0.045
tr|A7EDZ4|A7EDZ4_SCLS1 Putative uncharacterized protein OS=Scler...    40   0.045
tr|A8PIP6|A8PIP6_COPC7 Predicted protein OS=Coprinopsis cinerea ...    40   0.058
tr|A7EK39|A7EK39_SCLS1 Putative uncharacterized protein OS=Scler...    40   0.076
tr|A9SGW2|A9SGW2_PHYPA Predicted protein OS=Physcomitrella paten...    39   0.13 
tr|B1Z6K6|B1Z6K6_BURA4 Type VI secretion protein IcmF OS=Burkhol...    39   0.17 
tr|A9QKR6|A9QKR6_9VIRU Coat protein OS=Dahlia mosaic virus-Holla...    38   0.22 
tr|A5BAR0|A5BAR0_VITVI Putative uncharacterized protein OS=Vitis...    38   0.22 
tr|A5DDC5|A5DDC5_PICGU Putative uncharacterized protein OS=Pichi...    38   0.22 
tr|Q7XME6|Q7XME6_ORYSJ OSJNBa0061G20.13 protein OS=Oryza sativa ...    38   0.29 
tr|Q2R3G9|Q2R3G9_ORYSJ Retrotransposon protein, putative, Ty1-co...    38   0.29 
tr|Q18L98|Q18L98_CITSI Putative gag-pol polyprotein OS=Citrus si...    38   0.29 
tr|Q01KM9|Q01KM9_ORYSA OSIGBa0097A15.7 protein OS=Oryza sativa G...    38   0.29 
tr|A7QRC2|A7QRC2_VITVI Chromosome chr13 scaffold_149, whole geno...    38   0.29 
tr|A7PF24|A7PF24_VITVI Chromosome chr11 scaffold_13, whole genom...    38   0.29 
tr|A7PDL5|A7PDL5_VITVI Chromosome chr17 scaffold_12, whole genom...    38   0.29 
tr|A7P1W2|A7P1W2_VITVI Chromosome chr19 scaffold_4, whole genome...    38   0.29 
tr|A7P0S1|A7P0S1_VITVI Chromosome chr19 scaffold_4, whole genome...    38   0.29 
tr|A5BXZ5|A5BXZ5_VITVI Putative uncharacterized protein OS=Vitis...    38   0.29 

>tr|A7EW22|A7EW22_SCLS1 Putative uncharacterized protein
           OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 /
           Ss-1) GN=SS1G_09531 PE=4 SV=1
          Length = 960

 Score = 47.0 bits (110), Expect = 5e-04
 Identities = 21/38 (55%), Positives = 25/38 (65%)
 Frame = -2

Query: 231 KGKNKLSPEELERYRKDNRCFKCGEQGHVYRACTQKNT 118
           K KNKL  EE+ER RKD  CF+CG+ GH  R C  K +
Sbjct: 265 KFKNKLPKEEVERRRKDKLCFECGKPGHRARDCRSKRS 302


>tr|A7K6N0|A7K6N0_SCLS1 Putative uncharacterized protein
           OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 /
           Ss-1) GN=SS1G_14517 PE=4 SV=1
          Length = 1413

 Score = 46.2 bits (108), Expect = 8e-04
 Identities = 20/36 (55%), Positives = 24/36 (66%)
 Frame = -2

Query: 225 KNKLSPEELERYRKDNRCFKCGEQGHVYRACTQKNT 118
           KNKL  EE+ER RKD  CF+CG+ GH  R C  K +
Sbjct: 267 KNKLPKEEVERRRKDKLCFECGKPGHRARDCRSKRS 302


>tr|A7F8U4|A7F8U4_SCLS1 Putative uncharacterized protein
           OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 /
           Ss-1) GN=SS1G_14025 PE=4 SV=1
          Length = 1176

 Score = 46.2 bits (108), Expect = 8e-04
 Identities = 20/36 (55%), Positives = 24/36 (66%)
 Frame = -2

Query: 225 KNKLSPEELERYRKDNRCFKCGEQGHVYRACTQKNT 118
           KNKL  EE+ER RKD  CF+CG+ GH  R C  K +
Sbjct: 238 KNKLPKEEVERRRKDKLCFECGKPGHRARDCRSKRS 273


>tr|A7EM90|A7EM90_SCLS1 Putative uncharacterized protein
           OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 /
           Ss-1) GN=SS1G_06437 PE=4 SV=1
          Length = 1326

 Score = 46.2 bits (108), Expect = 8e-04
 Identities = 20/36 (55%), Positives = 24/36 (66%)
 Frame = -2

Query: 225 KNKLSPEELERYRKDNRCFKCGEQGHVYRACTQKNT 118
           KNKL  EE+ER RKD  CF+CG+ GH  R C  K +
Sbjct: 267 KNKLPKEEVERRRKDKLCFECGKPGHRARDCRSKRS 302


>tr|A7EJH2|A7EJH2_SCLS1 Putative uncharacterized protein
           OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 /
           Ss-1) GN=SS1G_05465 PE=4 SV=1
          Length = 1338

 Score = 46.2 bits (108), Expect = 8e-04
 Identities = 20/36 (55%), Positives = 24/36 (66%)
 Frame = -2

Query: 225 KNKLSPEELERYRKDNRCFKCGEQGHVYRACTQKNT 118
           KNKL  EE+ER RKD  CF+CG+ GH  R C  K +
Sbjct: 248 KNKLPKEEVERRRKDKLCFECGKPGHRARDCRSKRS 283


>tr|A7EDE5|A7EDE5_SCLS1 Putative uncharacterized protein
           OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 /
           Ss-1) GN=SS1G_03335 PE=4 SV=1
          Length = 168

 Score = 44.3 bits (103), Expect = 0.003
 Identities = 19/36 (52%), Positives = 24/36 (66%)
 Frame = -2

Query: 225 KNKLSPEELERYRKDNRCFKCGEQGHVYRACTQKNT 118
           KNKL  EE+ER RKD  CF+CG+ G+  R C  K +
Sbjct: 85  KNKLPKEEVERRRKDKLCFECGKPGYRVRDCRSKRS 120


>tr|A7EP32|A7EP32_SCLS1 Putative uncharacterized protein
           OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 /
           Ss-1) GN=SS1G_07081 PE=4 SV=1
          Length = 1056

 Score = 42.7 bits (99), Expect = 0.009
 Identities = 18/33 (54%), Positives = 24/33 (72%)
 Frame = -2

Query: 222 NKLSPEELERYRKDNRCFKCGEQGHVYRACTQK 124
           N LS EE +R R++N CF CG+ GH+ R C+QK
Sbjct: 256 NGLSVEEKKRRRENNLCFTCGKSGHMSRDCSQK 288


>tr|A7EG17|A7EG17_SCLS1 Putative uncharacterized protein
           OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 /
           Ss-1) GN=SS1G_04258 PE=4 SV=1
          Length = 120

 Score = 42.7 bits (99), Expect = 0.009
 Identities = 19/36 (52%), Positives = 23/36 (63%)
 Frame = -2

Query: 225 KNKLSPEELERYRKDNRCFKCGEQGHVYRACTQKNT 118
           KNKL  EE+ER  KD  CF+CG+ GH  R C  K +
Sbjct: 8   KNKLFKEEVERRCKDKLCFECGKPGHRARDCRSKRS 43


>tr|A7E6K6|A7E6K6_SCLS1 Putative uncharacterized protein
           OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 /
           Ss-1) GN=SS1G_00931 PE=4 SV=1
          Length = 433

 Score = 42.7 bits (99), Expect = 0.009
 Identities = 18/33 (54%), Positives = 24/33 (72%)
 Frame = -2

Query: 222 NKLSPEELERYRKDNRCFKCGEQGHVYRACTQK 124
           N LS EE +R R++N CF CG+ GH+ R C+QK
Sbjct: 256 NGLSVEEKKRRRENNLCFTCGKSGHMSRDCSQK 288


>tr|A7EEI4|A7EEI4_SCLS1 Putative uncharacterized protein
           OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 /
           Ss-1) GN=SS1G_03724 PE=4 SV=1
          Length = 678

 Score = 42.0 bits (97), Expect = 0.015
 Identities = 18/36 (50%), Positives = 23/36 (63%)
 Frame = -2

Query: 225 KNKLSPEELERYRKDNRCFKCGEQGHVYRACTQKNT 118
           KNKL  E++ER  KD  CF+CG+ GH  R C  K +
Sbjct: 48  KNKLPKEDVERRCKDKLCFECGKPGHRARDCRSKKS 83