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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914423
Clone id YMU001_000058_G03
Library
Length 431
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000058_G03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CATGGGAGAAAGGGGAGCATACAACATTGTGCGGTACTGTTTGGAGTATGGCTTTTGTAC
CTGGCTCAGCAGATGCAAACACCAAAGATGCCGCTGTAGTTCTGGTCGTCCTTGTTCATA
GAAAGGGGGCCATCCAAAATGAGCTACTTATACTGATCTGTGACATGATGGAGCGCTCTA
TCCAGTTGAGTCGGTATAGTCCCATTGTGCCACCTGGTCCCCTTGCTTATTCTGTAGGGG
ATGTGCCAGCTATGCCTGGTTTTGTCATTCTATTTAGATATGGTGACATATTACTGCTGG
AAGTCACTGGCACTGGTAATGTCTCTGTAATGTCATCAGTCCAGCTGCCAAGGGCTTGTA
GTAGCTCTCGTGGAAAAGCAGGTTCTGGAGGTGGTGATGAGGATGGCAGTTGTAATGAAG
CTGTGTCTGCT
■■Homology search results ■■ -
sp_hit_id Q3AE32
Definition sp|Q3AE32|THIM_CARHZ Hydroxyethylthiazole kinase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008)
Align length 38
Score (bit) 29.6
E-value 5.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914423|Adiantum capillus-veneris mRNA, clone:
YMU001_000058_G03.
         (431 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q3AE32|THIM_CARHZ Hydroxyethylthiazole kinase OS=Carboxydothe...    30   5.5  
sp|Q9XSB7|RUNX2_HORSE Runt-related transcription factor 2 (Fragm...    29   7.1  
sp|Q9IH62|GLYCP_NIPAV Glycoprotein G OS=Nipah virus GN=G PE=1 SV=1     29   9.3  
sp|P49749|EVX2_MOUSE Homeobox even-skipped homolog protein 2 OS=...    29   9.3  
sp|A1U4H0|APT_MARAV Adenine phosphoribosyltransferase OS=Marinob...    29   9.3  
sp|Q62635|MUC2_RAT Mucin-2 (Fragment) OS=Rattus norvegicus GN=Mu...    24   9.9  

>sp|Q3AE32|THIM_CARHZ Hydroxyethylthiazole kinase
           OS=Carboxydothermus hydrogenoformans (strain Z-2901 /
           DSM 6008) GN=thiM PE=3 SV=1
          Length = 267

 Score = 29.6 bits (65), Expect = 5.5
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = +3

Query: 204 IVPPGPLAYSVGDVPAMPGFVILFRYGDILLLEVTGTG 317
           +V  GP+ Y + +     G + L R GDI+L +VTGTG
Sbjct: 162 VVATGPVDYVIAE-----GELYLNRTGDIMLQKVTGTG 194


>sp|Q9XSB7|RUNX2_HORSE Runt-related transcription factor 2
           (Fragment) OS=Equus caballus GN=RUNX2 PE=2 SV=1
          Length = 131

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -2

Query: 340 TDDITETLPVPVTSSSNMSPYLNRMTKPGIAGTSPTE*ARGPG 212
           TD      P P +   +   YL++MT P I  T+P    RG G
Sbjct: 30  TDPRQAQSPPPWSYDQSYPSYLSQMTSPSIHSTTPLSSTRGTG 72


>sp|Q9IH62|GLYCP_NIPAV Glycoprotein G OS=Nipah virus GN=G PE=1 SV=1
          Length = 602

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
 Frame = +3

Query: 174 RSIQLSRYSPIVPPGPLAYSVGDVPAMP--GFVIL--FRYGD 287
           RSI+  RY  ++P GP     GD    P  GF++   F+Y D
Sbjct: 338 RSIEKGRYDKVMPYGPSGIKQGDTLYFPAVGFLVRTEFKYND 379


>sp|P49749|EVX2_MOUSE Homeobox even-skipped homolog protein 2 OS=Mus
           musculus GN=Evx2 PE=2 SV=1
          Length = 475

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 156 ICDMMERSIQLSRYSPIVPPGPLAYSVGDVPAMPGFVI 269
           + + +E S   +R SP +P  PL  ++GD+PA   F I
Sbjct: 36  VLEALENSQHPARLSPRLPSAPLHGALGDLPAKGKFEI 73


>sp|A1U4H0|APT_MARAV Adenine phosphoribosyltransferase
           OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM
           11845 / VT8) GN=apt PE=3 SV=1
          Length = 180

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 27/113 (23%), Positives = 48/113 (42%)
 Frame = +3

Query: 12  GEHTTLCGTVWSMAFVPGSADANTKDAAVVLVVLVHRKGAIQNELLILICDMMERSIQLS 191
           G+H      V +  F+ GSA A   +A+   +VLV +KG +  + L+   ++   +  + 
Sbjct: 51  GQHIDAVAAVDARGFIIGSALAYELNAS---LVLVRKKGKLPFDTLVEDYELEYGTASVE 107

Query: 192 RYSPIVPPGPLAYSVGDVPAMPGFVILFRYGDILLLEVTGTGNVSVMSSVQLP 350
            +     PG     V D+ A  G ++        L+   G   V V + + LP
Sbjct: 108 LHEDAFKPGDKVILVDDLIATGGTML----AATRLIRRIGAEIVEVAAMIDLP 156


>sp|Q62635|MUC2_RAT Mucin-2 (Fragment) OS=Rattus norvegicus GN=Muc2
            PE=1 SV=1
          Length = 1513

 Score = 24.3 bits (51), Expect(2) = 9.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 322  TLPVPVTSSSNMSPYLNRMTKPGIAGTSP 236
            T P P  ++S  SP  + +T P  + TSP
Sbjct: 1485 TSPTPSPTTSTTSPTTSPITSPTTSTTSP 1513



 Score = 23.9 bits (50), Expect(2) = 9.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 422  SFITTAILITTSRTCFSTRATTSP 351
            S IT+ +  TTS T  +T  TTSP
Sbjct: 1428 SHITSTVSPTTSPTTSTTSPTTSP 1451
tr_hit_id A9SPK3
Definition tr|A9SPK3|A9SPK3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 105
Score (bit) 80.1
E-value 5.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914423|Adiantum capillus-veneris mRNA, clone:
YMU001_000058_G03.
         (431 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SPK3|A9SPK3_PHYPA Predicted protein OS=Physcomitrella paten...    80   5e-14
tr|Q9SF03|Q9SF03_ARATH F26K24.25 protein (Arabidopsis thaliana g...    71   2e-11
tr|Q84R20|Q84R20_ARATH Putative uncharacterized protein At3g1196...    71   2e-11
tr|Q3EB78|Q3EB78_ARATH Uncharacterized protein At3g11960.2 OS=Ar...    71   2e-11
tr|A7PW25|A7PW25_VITVI Chromosome chr8 scaffold_34, whole genome...    62   1e-08
tr|A5B7Q5|A5B7Q5_VITVI Putative uncharacterized protein OS=Vitis...    62   2e-08
tr|Q7X971|Q7X971_ORYSJ Putative Splicing factor 3B subunit 3 OS=...    61   3e-08
tr|B8B885|B8B885_ORYSI Putative uncharacterized protein OS=Oryza...    61   3e-08
tr|A3BHL8|A3BHL8_ORYSJ Putative uncharacterized protein OS=Oryza...    61   3e-08
tr|A7EHY9|A7EHY9_SCLS1 Putative uncharacterized protein OS=Scler...    33   7.1  
tr|Q2NUB6|Q2NUB6_SODGM Putative uncharacterized protein OS=Sodal...    33   9.3  

>tr|A9SPK3|A9SPK3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_187106 PE=4 SV=1
          Length = 1391

 Score = 80.1 bits (196), Expect = 5e-14
 Identities = 51/105 (48%), Positives = 67/105 (63%), Gaps = 8/105 (7%)
 Frame = +3

Query: 15  EHTTLCGTVWSMAFVPGSADANT----KDAAVVLVVLVHRKGAIQNELLILICDMMERSI 182
           E  T  GT+WSM FV    D  T     D+ ++L VLVHRKGA  NE++IL CD  ER I
Sbjct: 203 EKFTGWGTIWSMTFVGMPVDHLTPIVKSDSLLLLAVLVHRKGAASNEIVILKCDTKERII 262

Query: 183 QL-SRY-SPIVPP--GPLAYSVGDVPAMPGFVILFRYGDILLLEV 305
           Q+ +RY S ++ P   PL  SV DVPA PGF++L   G++LLL++
Sbjct: 263 QVTARYDSSVIRPFISPLWISVLDVPAAPGFLLLSLPGELLLLDL 307


>tr|Q9SF03|Q9SF03_ARATH F26K24.25 protein (Arabidopsis thaliana
           genomic DNA, chromosome 3, P1 clone: MEC18)
           OS=Arabidopsis thaliana GN=F26K24.25 PE=4 SV=1
          Length = 1331

 Score = 71.2 bits (173), Expect = 2e-11
 Identities = 40/99 (40%), Positives = 62/99 (62%), Gaps = 1/99 (1%)
 Frame = +3

Query: 27  LCGTVWSMAFVPGSADAN-TKDAAVVLVVLVHRKGAIQNELLILICDMMERSIQLSRYSP 203
           + GT+WSM F+  S D N +K+ A +L ++++RKG++ NEL +   ++ E SI L   S 
Sbjct: 185 ISGTIWSMCFI--SKDFNESKEYAPILAIVINRKGSLMNELALFRWNVKEESICL--ISE 240

Query: 204 IVPPGPLAYSVGDVPAMPGFVILFRYGDILLLEVTGTGN 320
            V  G LA+S+ +VP   GF  LFR GD+LL+++    N
Sbjct: 241 YVETGALAHSIVEVPHSSGFAFLFRIGDVLLMDLRDPQN 279


>tr|Q84R20|Q84R20_ARATH Putative uncharacterized protein At3g11960
           OS=Arabidopsis thaliana GN=At3g11960 PE=2 SV=1
          Length = 1379

 Score = 71.2 bits (173), Expect = 2e-11
 Identities = 40/99 (40%), Positives = 62/99 (62%), Gaps = 1/99 (1%)
 Frame = +3

Query: 27  LCGTVWSMAFVPGSADAN-TKDAAVVLVVLVHRKGAIQNELLILICDMMERSIQLSRYSP 203
           + GT+WSM F+  S D N +K+ A +L ++++RKG++ NEL +   ++ E SI L   S 
Sbjct: 213 ISGTIWSMCFI--SKDFNESKEYAPILAIVINRKGSLMNELALFRWNVKEESICL--ISE 268

Query: 204 IVPPGPLAYSVGDVPAMPGFVILFRYGDILLLEVTGTGN 320
            V  G LA+S+ +VP   GF  LFR GD+LL+++    N
Sbjct: 269 YVETGALAHSIVEVPHSSGFAFLFRIGDVLLMDLRDPQN 307


>tr|Q3EB78|Q3EB78_ARATH Uncharacterized protein At3g11960.2
           OS=Arabidopsis thaliana GN=At3g11960 PE=4 SV=1
          Length = 1329

 Score = 71.2 bits (173), Expect = 2e-11
 Identities = 40/99 (40%), Positives = 62/99 (62%), Gaps = 1/99 (1%)
 Frame = +3

Query: 27  LCGTVWSMAFVPGSADAN-TKDAAVVLVVLVHRKGAIQNELLILICDMMERSIQLSRYSP 203
           + GT+WSM F+  S D N +K+ A +L ++++RKG++ NEL +   ++ E SI L   S 
Sbjct: 155 ISGTIWSMCFI--SKDFNESKEYAPILAIVINRKGSLMNELALFRWNVKEESICL--ISE 210

Query: 204 IVPPGPLAYSVGDVPAMPGFVILFRYGDILLLEVTGTGN 320
            V  G LA+S+ +VP   GF  LFR GD+LL+++    N
Sbjct: 211 YVETGALAHSIVEVPHSSGFAFLFRIGDVLLMDLRDPQN 249


>tr|A7PW25|A7PW25_VITVI Chromosome chr8 scaffold_34, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00025448001
           PE=4 SV=1
          Length = 1363

 Score = 62.4 bits (150), Expect = 1e-08
 Identities = 32/100 (32%), Positives = 59/100 (59%)
 Frame = +3

Query: 21  TTLCGTVWSMAFVPGSADANTKDAAVVLVVLVHRKGAIQNELLILICDMMERSIQLSRYS 200
           T++ GT+WSM F+    +  +     VL ++++R+GA+  EL++L   ++E ++++   S
Sbjct: 204 TSISGTIWSMCFISKDLNQPSGGYNPVLAIILNRRGAVLTELVLLEWIIIENAVRV--IS 261

Query: 201 PIVPPGPLAYSVGDVPAMPGFVILFRYGDILLLEVTGTGN 320
                G +A+S+ +VP   GF  LFR GD LL+++    N
Sbjct: 262 QYAEAGHVAHSIVEVPHSYGFAFLFRIGDALLMDLRDAHN 301


>tr|A5B7Q5|A5B7Q5_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_022228 PE=4 SV=1
          Length = 1298

 Score = 61.6 bits (148), Expect = 2e-08
 Identities = 32/100 (32%), Positives = 58/100 (58%)
 Frame = +3

Query: 21  TTLCGTVWSMAFVPGSADANTKDAAVVLVVLVHRKGAIQNELLILICDMMERSIQLSRYS 200
           T++ GT+WSM F+    +  +     VL ++++R+GA+  EL++L   ++E ++++   S
Sbjct: 245 TSISGTIWSMCFISKDLNQPSGGYNPVLAIILNRRGAVLTELVLLEWIIIENAVRV--IS 302

Query: 201 PIVPPGPLAYSVGDVPAMPGFVILFRYGDILLLEVTGTGN 320
                G  A+S+ +VP   GF  LFR GD LL+++    N
Sbjct: 303 QYAEAGHXAHSIVEVPHSYGFAFLFRIGDALLMDLRDAHN 342


>tr|Q7X971|Q7X971_ORYSJ Putative Splicing factor 3B subunit 3
           OS=Oryza sativa subsp. japonica GN=P0431A02.16 PE=4 SV=1
          Length = 1355

 Score = 60.8 bits (146), Expect = 3e-08
 Identities = 32/109 (29%), Positives = 61/109 (55%)
 Frame = +3

Query: 21  TTLCGTVWSMAFVPGSADANTKDAAVVLVVLVHRKGAIQNELLILICDMMERSIQLSRYS 200
           +++ GTVWSM F+    D    +    +V ++  +G+  N+L +   D  +R+I   R S
Sbjct: 227 SSIHGTVWSMCFISTCLD----EEYYPVVAMIVNRGSDVNDLALYGLDSHKRTID--RIS 280

Query: 201 PIVPPGPLAYSVGDVPAMPGFVILFRYGDILLLEVTGTGNVSVMSSVQL 347
             +  GPLA  + ++P + GF ++FR GD+LL+++    ++S +  + L
Sbjct: 281 TYLEAGPLALEISEIPQLYGFALMFRAGDVLLMDLRNPKDISCIHRISL 329


>tr|B8B885|B8B885_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_25307 PE=4 SV=1
          Length = 1429

 Score = 60.8 bits (146), Expect = 3e-08
 Identities = 32/109 (29%), Positives = 61/109 (55%)
 Frame = +3

Query: 21  TTLCGTVWSMAFVPGSADANTKDAAVVLVVLVHRKGAIQNELLILICDMMERSIQLSRYS 200
           +++ GTVWSM F+    D    +    +V ++  +G+  N+L +   D  +R+I   R S
Sbjct: 227 SSIHGTVWSMCFISTCLD----EEYYPVVAMIVNRGSDVNDLALYGLDSHKRTID--RIS 280

Query: 201 PIVPPGPLAYSVGDVPAMPGFVILFRYGDILLLEVTGTGNVSVMSSVQL 347
             +  GPLA  + ++P + GF ++FR GD+LL+++    ++S +  + L
Sbjct: 281 TYLEAGPLALEISEIPQLYGFALMFRAGDVLLMDLRNPKDISCIHRISL 329


>tr|A3BHL8|A3BHL8_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_022540 PE=4 SV=1
          Length = 1303

 Score = 60.8 bits (146), Expect = 3e-08
 Identities = 32/109 (29%), Positives = 61/109 (55%)
 Frame = +3

Query: 21  TTLCGTVWSMAFVPGSADANTKDAAVVLVVLVHRKGAIQNELLILICDMMERSIQLSRYS 200
           +++ GTVWSM F+    D    +    +V ++  +G+  N+L +   D  +R+I   R S
Sbjct: 227 SSIHGTVWSMCFISTCLD----EEYYPVVAMIVNRGSDVNDLALYGLDSHKRTID--RIS 280

Query: 201 PIVPPGPLAYSVGDVPAMPGFVILFRYGDILLLEVTGTGNVSVMSSVQL 347
             +  GPLA  + ++P + GF ++FR GD+LL+++    ++S +  + L
Sbjct: 281 TYLEAGPLALEISEIPQLYGFALMFRAGDVLLMDLRNPKDISCIHRISL 329


>tr|A7EHY9|A7EHY9_SCLS1 Putative uncharacterized protein
           OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 /
           Ss-1) GN=SS1G_04931 PE=4 SV=1
          Length = 334

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 15/59 (25%)
 Frame = +3

Query: 195 YSPIVPPGPLAYSVGDVPAMPGFVILFRYGDI---------------LLLEVTGTGNVS 326
           Y P+ P G +AY + +V  +P   ILF Y D+               +++  +GTG+VS
Sbjct: 199 YPPVEPTGKIAYDISNVTEIPRVDILFSYQDMQNDTLYNAVSSGAKGIIIAGSGTGSVS 257