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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914430
Clone id YMU001_000058_G10
Library
Length 378
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000058_G10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AACATAATGTTGTAGCTGCTTATCTTGGCAGATTGATTATCATTCGAATGTGCTTATAAG
GGAGGTATTCAAATGGGTACTTCGTATTGGATCAGTCTAGAAAGGTCAGATCTTAAAACC
CCGGCGTTTCAGTAGTGACAAAACACTGCTGAAACACAGGTTATGGGGTTCAGCTGTTTA
CATGGGTTGGCCCATGAGTGGCAGCAGGAAAAATTTCAAGGGTTGTATAGGCTTGCAGTA
GTCTTTCTGACATGTCAAGTTCATGTTGATGAACTCGAGTTTATCGAGTGGTAGTGGCTA
TTCTGCTACACGCTCCCTGTGTTTGTGTAGGTGGACACATTTTAGGGGTATGAGTTGTTG
AGCTCATATCTAAGTAAA
■■Homology search results ■■ -
sp_hit_id Q5RD64
Definition sp|Q5RD64|CNTP2_PONAB Contactin-associated protein-like 2 OS=Pongo abelii
Align length 22
Score (bit) 30.0
E-value 3.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914430|Adiantum capillus-veneris mRNA, clone:
YMU001_000058_G10.
         (378 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5RD64|CNTP2_PONAB Contactin-associated protein-like 2 OS=Pon...    30   3.7  
sp|Q9UHC6|CNTP2_HUMAN Contactin-associated protein-like 2 OS=Hom...    30   3.7  
sp|Q9CPW0|CNTP2_MOUSE Contactin-associated protein-like 2 OS=Mus...    29   8.3  

>sp|Q5RD64|CNTP2_PONAB Contactin-associated protein-like 2 OS=Pongo
           abelii GN=CNTNAP2 PE=2 SV=1
          Length = 1331

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 164 WGSAVYMGWPMSGSRKNFKGCI 229
           +G   + G P S SRKNFKGC+
Sbjct: 316 FGGIPFSGKPSSSSRKNFKGCM 337


>sp|Q9UHC6|CNTP2_HUMAN Contactin-associated protein-like 2 OS=Homo
           sapiens GN=CNTNAP2 PE=1 SV=1
          Length = 1331

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 164 WGSAVYMGWPMSGSRKNFKGCI 229
           +G   + G P S SRKNFKGC+
Sbjct: 316 FGGIPFSGKPSSSSRKNFKGCM 337


>sp|Q9CPW0|CNTP2_MOUSE Contactin-associated protein-like 2 OS=Mus
           musculus GN=Cntnap2 PE=1 SV=2
          Length = 1332

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 164 WGSAVYMGWPMSGSRKNFKGCI 229
           +G   + G P S +RKNFKGC+
Sbjct: 316 FGGIPFSGKPSSSNRKNFKGCM 337
tr_hit_id B5JYI5
Definition tr|B5JYI5|B5JYI5_9GAMM Ribonucleoside-diphosphate reductase, alpha subunit (Fragment) OS=gamma proteobacterium HTCC5015
Align length 45
Score (bit) 33.9
E-value 4.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914430|Adiantum capillus-veneris mRNA, clone:
YMU001_000058_G10.
         (378 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B5JYI5|B5JYI5_9GAMM Ribonucleoside-diphosphate reductase, alp...    34   4.1  
tr|B4IZE7|B4IZE7_DROGR GH16409 OS=Drosophila grimshawi GN=GH1640...    33   7.0  
tr|Q4E143|Q4E143_TRYCR Putative uncharacterized protein OS=Trypa...    33   9.2  

>tr|B5JYI5|B5JYI5_9GAMM Ribonucleoside-diphosphate reductase, alpha
           subunit (Fragment) OS=gamma proteobacterium HTCC5015
           GN=GP5015_1273 PE=4 SV=1
          Length = 839

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -3

Query: 265 HELDMSERLLQAYTTLEIFPAATHGPTHVNS*TP*PVFQQCFVTT 131
           +E+D  ER ++ YT L  F   +  PT  NS T  P    C++TT
Sbjct: 162 NEVDREERAIEFYTLLSSFDFMSSTPTLFNSATLRPQLSSCYLTT 206


>tr|B4IZE7|B4IZE7_DROGR GH16409 OS=Drosophila grimshawi GN=GH16409
           PE=4 SV=1
          Length = 211

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = +2

Query: 41  HSNVLIREVFKWVLRIGSV*KGQILKPRRFSSDKTLLKHRLWGS 172
           +SNV + +   W+LR G+  +G  ++P  F S   +LKH  +GS
Sbjct: 5   YSNVQLSKQLSWLLRHGAQKEGLTIQPDGFVSINEILKHSRFGS 48


>tr|Q4E143|Q4E143_TRYCR Putative uncharacterized protein
           OS=Trypanosoma cruzi GN=Tc00.1047053506247.120 PE=4 SV=1
          Length = 862

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 21/68 (30%), Positives = 28/68 (41%)
 Frame = +2

Query: 8   CCSCLSWQIDYHSNVLIREVFKWVLRIGSV*KGQILKPRRFSSDKTLLKHRLWGSAVYMG 187
           CC C+S + D H  VL    +   L I SV K   L+      +K  +  + WG  V   
Sbjct: 166 CCECVSLKDDLHHPVLEPVEYDNKLFIFSVHKRNDLREIAVPIEKVQVMSKRWGLPVVPS 225

Query: 188 WPMSGSRK 211
           W   G  K
Sbjct: 226 WRAGGREK 233