BP914443 |
Clone id |
YMU001_000059_A02 |
Library |
YMU01 |
Length |
529 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000059_A02. |
Accession |
BP914443 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL1901Contig1 |
Sequence |
GATATTACCTGCAGGTACTCACAACTCTGCTTTCCCGGACACGAAGTCCTTACTTGGGAA TCCCAACTTCCATATCACAACTTGAGAGACTACCTCTCTCCGATCCATGGATCTACTTCC CAAACTCGGGTACGAAACCCTTGGGCTGATCTGGCTCTAGTTCCTCAGAGCGCTTTTCTC CTGCAGAGGCTCATGCCTTCCTCTGCTCCTACTCCCTCACGAAGAGGAAGTACACCTGCA ATCAAATACTCAAAGATCAGAACATGAAAATCGTTACCTTCAAAGTCTCGACGCTCGAAA CGCAACTCGATTCTCGAAAAGCAATTCCTCAGAAGAGATCTCTCCATAGAAAATCCTCTC TTCCAATCCTACACACAAAAGAGGTGTGTTCTCTCGTAAATCAGCCCCGTCTACGACATT TATGGGCTGAAAACAGAGAAAAACAGCAACTTGTCGCGATGGAAACACGCTTCGTAGGCA CTTCTTCGCCAGCGAACTCGCGCACTGGGTCTTTGCGACATCTGGTACA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P48725 |
Definition |
sp|P48725|PCNT_MOUSE Pericentrin OS=Mus musculus |
Align length |
134 |
Score (bit) |
35.4 |
E-value |
0.17 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP914443|Adiantum capillus-veneris mRNA, clone: YMU001_000059_A02. (529 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P48725|PCNT_MOUSE Pericentrin OS=Mus musculus GN=Pcnt PE=2 SV=1 35 0.17 sp|A6LFD0|DDL_PARD8 D-alanine--D-alanine ligase OS=Parabacteroid... 31 3.2 sp|Q8PET9|UXAC_XANAC Uronate isomerase OS=Xanthomonas axonopodis... 31 4.2 sp|Q32LD3|LYPD4_BOVIN Ly6/PLAUR domain-containing protein 4 OS=B... 30 7.1 sp|Q7VKB3|HSLU_HAEDU ATP-dependent hsl protease ATP-binding subu... 30 7.1 sp|Q55FT5|COG4_DICDI Conserved oligomeric Golgi complex subunit ... 30 7.1 sp|Q9AM27|UXAC_XANOR Uronate isomerase OS=Xanthomonas oryzae pv.... 30 7.2 sp|Q6FRM1|AMN1_CANGA Antagonist of mitotic exit network protein ... 30 9.2 sp|P18168|SERR_DROME Serrate protein OS=Drosophila melanogaster ... 30 9.4 sp|Q9VEI9|HMX_DROME Homeobox protein Hmx OS=Drosophila melanogas... 30 9.4
>sp|P48725|PCNT_MOUSE Pericentrin OS=Mus musculus GN=Pcnt PE=2 SV=1 Length = 1920
Score = 35.4 bits (80), Expect = 0.17 Identities = 34/134 (25%), Positives = 51/134 (38%), Gaps = 5/134 (3%) Frame = +3
Query: 66 TSISQLERLPLSDPWIYFPNSGTKPLXXXXXXXXERFSPAEAHAFLCSYSLTKRKYT--C 239 TS ++L PL D W + G + E S E + +C + + T C Sbjct: 971 TSDARLAAAPLGDMW---SDEGLLEIDRTLPEGAETSSVCEISSHVCESFFIRPENTLDC 1027
Query: 240 NQILKDQNMKIVTFKVSTLETQLDSRKAIPQKRSLHRKSSLPILHTKEVCSLVNQPR--- 410 Q ++ + T LE LDS K + + R LHR H E + Q + Sbjct: 1028 EQPIRRVYQSLSTAVEGLLEMALDSSKQLEEARQLHRCVEREFRHRNEEMAQAMQKQQEL 1087
Query: 411 LRHLWAENREKQQL 452 L L E+ K +L Sbjct: 1088 LERLREESAAKDRL 1101
>sp|A6LFD0|DDL_PARD8 D-alanine--D-alanine ligase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=ddl PE=3 SV=1 Length = 330
Score = 31.2 bits (69), Expect = 3.2 Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 6/82 (7%) Frame = +3
Query: 213 SLTKRKYTCNQILKDQNMKIVT----FKVSTL-ETQLDSRKAIP-QKRSLHRKSSLPILH 374 +LT KY CN LKD +KI FK T+ + ++ +R +P + SS + Sbjct: 112 ALTFNKYVCNHYLKDFGVKIAASIHLFKGETITDEEVVTRLGLPIFVKPNDGGSSFGVTK 171
Query: 375 TKEVCSLVNQPRLRHLWAENRE 440 KEV ++ QP + + E RE Sbjct: 172 VKEVSAI--QPAIAKAFGEGRE 191
>sp|Q8PET9|UXAC_XANAC Uronate isomerase OS=Xanthomonas axonopodis pv. citri GN=uxaC PE=3 SV=1 Length = 472
Score = 30.8 bits (68), Expect = 4.2 Identities = 20/62 (32%), Positives = 25/62 (40%) Frame = +1
Query: 37 GHEVLTWESQLPYHNLRDYLSPIHGSTSQTRVRNPWADLALVPQSAFLLQRLMPSSAPTP 216 G +VLTW+ L H R HG+TS A L P A L + A TP Sbjct: 222 GEDVLTWDGYLRAHRQRRAFFAAHGATSTDHGHPSAATADLSPAEAQRLFDTVVRGAATP 281
Query: 217 SR 222 + Sbjct: 282 EQ 283
>sp|Q32LD3|LYPD4_BOVIN Ly6/PLAUR domain-containing protein 4 OS=Bos taurus GN=LYPD4 PE=2 SV=1 Length = 246
Score = 30.0 bits (66), Expect = 7.1 Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Frame = +3
Query: 201 LCSYSLTKRKYTCNQILKDQNMK-IVTFKVSTLETQLDSRKAIPQKRSLHRKSSLPILHT 377 + SYS R Y CN + NM I+ K T +T S + P H KS LP + Sbjct: 103 IASYSRVCRTYLCNNLT---NMNAILHLKARTPKTLKSSSHSCPTCVGEHSKSCLPNFVS 159
Query: 378 KEVC 389 E C Sbjct: 160 SESC 163
>sp|Q7VKB3|HSLU_HAEDU ATP-dependent hsl protease ATP-binding subunit hslU OS=Haemophilus ducreyi GN=hslU PE=3 SV=2 Length = 440
Score = 30.0 bits (66), Expect = 7.1 Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 5/100 (5%) Frame = +3
Query: 243 QILKDQNMKIVTFKVSTLETQLDSRKAIPQKRSLHRKSSLPILHTKEVCSLVNQPRLRHL 422 +I+ M+ +T ++ +L + K QKR + K +L ++ +E LVNQ L+ Sbjct: 182 EIMTPPGMEEMTSQLQSLFEGMSPNKT--QKRKMKIKDALKVMLDEEAAKLVNQEELKQQ 239
Query: 423 WAENREKQQLVAME-----TRFVGTSSPANSRTGSLRHLV 527 E E+ +V ++ + G S SR G R L+ Sbjct: 240 AIEAVEQHGIVFIDEIDKICKKSGNSGGDVSREGVQRDLL 279
>sp|Q55FT5|COG4_DICDI Conserved oligomeric Golgi complex subunit 4 OS=Dictyostelium discoideum GN=cog4 PE=3 SV=1 Length = 911
Score = 30.0 bits (66), Expect = 7.1 Identities = 15/55 (27%), Positives = 28/55 (50%) Frame = -3
Query: 332 LRNCFSRIELRFERRDFEGNDFHVLIFEYLIAGVLPLREGVGAEEGMSLCRRKAL 168 L+NC +++ E+ D+EG FH+ + + VL + E +S+ +K L Sbjct: 114 LKNCIEGVQISIEKEDYEGAAFHINRYLSIDKSVLE----DNSSEKLSIAEKKLL 164
>sp|Q9AM27|UXAC_XANOR Uronate isomerase OS=Xanthomonas oryzae pv. oryzae GN=uxaC PE=3 SV=2 Length = 472
Score = 30.0 bits (66), Expect = 7.2 Identities = 20/62 (32%), Positives = 24/62 (38%) Frame = +1
Query: 37 GHEVLTWESQLPYHNLRDYLSPIHGSTSQTRVRNPWADLALVPQSAFLLQRLMPSSAPTP 216 G +VLTW L H R HG+TS A L P A L + A TP Sbjct: 222 GEDVLTWNGYLRAHRQRRAFFAAHGATSTDHGHPSAATADLSPAQAQRLFDTVVRGAATP 281
Query: 217 SR 222 + Sbjct: 282 EQ 283
>sp|Q6FRM1|AMN1_CANGA Antagonist of mitotic exit network protein 1 OS=Candida glabrata GN=AMN1 PE=3 SV=1 Length = 511
Score = 29.6 bits (65), Expect = 9.2 Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 4/67 (5%) Frame = +3
Query: 234 TCNQILKDQNMKIVTFKVSTLET----QLDSRKAIPQKRSLHRKSSLPILHTKEVCSLVN 401 T N++ K M+ + F ST T Q ++K PQ LH+ S + +++ + +++ Sbjct: 218 TWNKVSKGYLMRDLKFTKSTSLTNFLSQCSTKKTTPQSLILHKMSDINNNNSRGLEIIID 277
Query: 402 QPRLRHL 422 +LRHL Sbjct: 278 PKQLRHL 284
>sp|P18168|SERR_DROME Serrate protein OS=Drosophila melanogaster GN=Ser PE=1 SV=3 Length = 1404
Score = 29.6 bits (65), Expect = 9.4 Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 7/56 (12%) Frame = +1
Query: 79 NLRDYLSPIHGSTSQTRVR-------NPWADLALVPQSAFLLQRLMPSSAPTPSRR 225 NLR Y +P+ GSTS R NP +LA S+ L R P P R Sbjct: 1278 NLRRYTNPLKGSTSSLRAATGMELSLNPAPELAASAASSSALHRSQPLFPPCDFER 1333
>sp|Q9VEI9|HMX_DROME Homeobox protein Hmx OS=Drosophila melanogaster GN=Hmx PE=2 SV=3 Length = 592
Score = 29.6 bits (65), Expect = 9.4 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%) Frame = +1
Query: 13 RYSQLCFPGHEVLTWESQ-LPYHNLRDYLSPIHGSTSQTRVRNPWADLALVPQS 171 RY+ LC PG W Q LP+H SP H S+S NP + ++ P + Sbjct: 290 RYAALCPPGWP---WAPQRLPFH------SPTHDSSSTNTTENPPSPTSMSPNN 334
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q4L785 |
Definition |
tr|Q4L785|Q4L785_STAHJ Similar to DNA translocase stage III sporulation protein OS=Staphylococcus haemolyticus (strain JCSC1435) |
Align length |
75 |
Score (bit) |
35.0 |
E-value |
2.4 |
Report |
|