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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914452
Clone id YMU001_000059_A12
Library
Length 535
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000059_A12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AAACAGTCAGGTCCAATCAGGTAGGTAGCAAGTAGAATAACTCCACTACCCTCAACTCTT
CTCCCCAACGTATCTTCTTCAAATTGGTAGCCAGGCATCCTAGCTTCCGAGCATTGATGT
AGTAAACCCCTCCTGGAAATGTCCAATCAAATTCCCATCCTCTATCAATGCGAGTGGAGT
GTGGTGTATGAGCCTTCATCAGTATCTCCATGGCATCTCGCCTCATCTGGTAAACTGGGG
ATCTTCGAGCTTGCTCATAAATAAGCTAAAACACTTGGGACTTCCGATATTCTAGCACGG
GGCCTTCCTGCAACACCAATGCAAGGAATTCGAATCAGCTACCTATATGCTTTCAGTTCC
TTCTTAAATATTCAAACAGTACGACTTTATGTCCCATCCTAACCTAGGCTTGCTCTGATA
CCAGGTGTGAGTTCCCCACCCCACCGTATCAAACGGCGGATCTAATGGTGAACCTGGTGG
CCACTAGATCTATAACGGAAGCAAACAAAAAGGTTCAGGGTTCAACTAGCGGACA
■■Homology search results ■■ -
sp_hit_id Q9HAU0
Definition sp|Q9HAU0|PKHA5_HUMAN Pleckstrin homology domain-containing family A member 5 OS=Homo sapiens
Align length 40
Score (bit) 34.3
E-value 0.39
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914452|Adiantum capillus-veneris mRNA, clone:
YMU001_000059_A12.
         (535 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9HAU0|PKHA5_HUMAN Pleckstrin homology domain-containing fami...    34   0.39 
sp|Q74ED9|GLGA1_GEOSL Glycogen synthase 1 OS=Geobacter sulfurred...    33   0.87 
sp|Q39XS5|GLGA1_GEOMG Glycogen synthase 1 OS=Geobacter metallire...    33   1.1  
sp|O60104|MED7_SCHPO Mediator of RNA polymerase II transcription...    31   3.3  
sp|Q9G210|CYB_PANOS Cytochrome b OS=Pantherophis obsoletus GN=MT...    31   4.3  
sp|Q9MLI8|CYB_HETSI Cytochrome b OS=Heterodon simus GN=MT-CYB PE...    31   4.3  
sp|O35942|NEK2_MOUSE Serine/threonine-protein kinase Nek2 OS=Mus...    30   7.4  
sp|P0C580|KATG_MYCSM Catalase-peroxidase OS=Mycobacterium smegma...    30   7.4  
sp|A0R609|KATG1_MYCS2 Catalase-peroxidase 1 OS=Mycobacterium sme...    30   7.4  
sp|Q5TZ18|NAV3_DANRE Neuron navigator 3 OS=Danio rerio GN=nav3 P...    30   9.7  
sp|Q9G250|CYB_PANBA Cytochrome b OS=Pantherophis bairdi GN=MT-CY...    30   9.7  

>sp|Q9HAU0|PKHA5_HUMAN Pleckstrin homology domain-containing family
           A member 5 OS=Homo sapiens GN=PLEKHA5 PE=1 SV=1
          Length = 1116

 Score = 34.3 bits (77), Expect = 0.39
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -1

Query: 208 EILMKAHTPHSTRIDRGWEFDWTFPGGVYYI--NARKLGC 95
           E ++  H   ST +  GWE  +TF G  YYI  N RK+ C
Sbjct: 45  EAVVTGHRRQSTDLPTGWEEAYTFEGARYYINHNERKVTC 84


>sp|Q74ED9|GLGA1_GEOSL Glycogen synthase 1 OS=Geobacter
           sulfurreducens GN=glgA1 PE=3 SV=1
          Length = 501

 Score = 33.1 bits (74), Expect = 0.87
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = -2

Query: 462 DPPFDTVGWGTHTWYQSK 409
           D  FDTVGW  HTWY+ K
Sbjct: 437 DALFDTVGWTVHTWYRRK 454


>sp|Q39XS5|GLGA1_GEOMG Glycogen synthase 1 OS=Geobacter
           metallireducens (strain GS-15 / ATCC 53774 / DSM 7210)
           GN=glgA1 PE=3 SV=1
          Length = 502

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = -2

Query: 453 FDTVGWGTHTWYQSK 409
           FDTVGW  HTWY  K
Sbjct: 440 FDTVGWAVHTWYHRK 454


>sp|O60104|MED7_SCHPO Mediator of RNA polymerase II transcription
           subunit 7 OS=Schizosaccharomyces pombe GN=med7 PE=1 SV=1
          Length = 376

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 19/68 (27%), Positives = 33/68 (48%)
 Frame = +2

Query: 71  YLLQIGSQAS*LPSIDVVNPSWKCPIKFPSSINASGVWCMSLHQYLHGISPHLVNWGSSS 250
           Y L+  S++  L  ++++    K P +FPS +    V  ++LH  ++   PH        
Sbjct: 226 YELRFLSRSLMLNFLELLGIMAKAPEQFPSKVENIRVLLLNLHHLINDYRPHQSRESLIM 285

Query: 251 LLINKLKH 274
           LL  +LKH
Sbjct: 286 LLEKQLKH 293


>sp|Q9G210|CYB_PANOS Cytochrome b OS=Pantherophis obsoletus
           GN=MT-CYB PE=3 SV=1
          Length = 372

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
 Frame = -2

Query: 483 WPPGSPLDPPFDTVGWGT----HTWYQSKPRLGW 394
           W    P++PPF T+G  T     T++   P LGW
Sbjct: 329 WAATKPVEPPFTTIGQATAILYFTFFIMNPLLGW 362


>sp|Q9MLI8|CYB_HETSI Cytochrome b OS=Heterodon simus GN=MT-CYB PE=3
           SV=1
          Length = 372

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
 Frame = -2

Query: 483 WPPGSPLDPPFDTVGWGTHTWYQS----KPRLGW 394
           W    P++PPF T+G  T   Y S     P LGW
Sbjct: 329 WAATKPVEPPFTTIGLSTSILYFSFFIINPLLGW 362


>sp|O35942|NEK2_MOUSE Serine/threonine-protein kinase Nek2 OS=Mus
           musculus GN=Nek2 PE=1 SV=1
          Length = 443

 Score = 30.0 bits (66), Expect = 7.4
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 151 FDWTFPGGVYYINARKLGCLATNLKKIRWGEELRVVELFYLLP 23
           F  TF G  YY++  ++ CL+ N K   W     + EL  L+P
Sbjct: 172 FAKTFVGTPYYMSPEQMSCLSYNEKSDIWSLACLLYELCALMP 214


>sp|P0C580|KATG_MYCSM Catalase-peroxidase OS=Mycobacterium smegmatis
           GN=katG PE=3 SV=1
          Length = 740

 Score = 30.0 bits (66), Expect = 7.4
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
 Frame = +1

Query: 151 IPILYQCEWSVVYEPSSVSPWHLASSGKLGIFELAHK*AKT---LGTSDILAR 300
           + ILY  EW +   P+  + W    +G      LAH+  KT   + TSD+  R
Sbjct: 341 LEILYGNEWELTKSPAGANQWKPKDNGWANSVPLAHEDGKTHPSMLTSDLALR 393


>sp|A0R609|KATG1_MYCS2 Catalase-peroxidase 1 OS=Mycobacterium
           smegmatis GN=katG1 PE=3 SV=1
          Length = 739

 Score = 30.0 bits (66), Expect = 7.4
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
 Frame = +1

Query: 151 IPILYQCEWSVVYEPSSVSPWHLASSGKLGIFELAHK*AKT---LGTSDILAR 300
           + ILY  EW +   P+  + W    +G      LAH+  KT   + TSD+  R
Sbjct: 340 LEILYGNEWELTKSPAGANQWKPKDNGWANSVPLAHEDGKTHPSMLTSDLALR 392


>sp|Q5TZ18|NAV3_DANRE Neuron navigator 3 OS=Danio rerio GN=nav3 PE=2
            SV=1
          Length = 2269

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +2

Query: 47   YPQLFSPTYLLQIGSQAS*LPSIDVVNPSWKCP 145
            YP + SPT+    GS+AS  PS      S KCP
Sbjct: 1210 YPDIASPTFRRLFGSKASSKPSSPGTPDSGKCP 1242
tr_hit_id B5ECG7
Definition tr|B5ECG7|B5ECG7_GEOBB Glycogen/starch synthase, ADP-glucose type OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622)
Align length 15
Score (bit) 35.0
E-value 2.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914452|Adiantum capillus-veneris mRNA, clone:
YMU001_000059_A12.
         (535 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B5ECG7|B5ECG7_GEOBB Glycogen/starch synthase, ADP-glucose typ...    35   2.5  
tr|A8B6T4|A8B6T4_GIALA Histidyl-tRNA synthetase OS=Giardia lambl...    34   4.2  
tr|Q6NSF8|Q6NSF8_HUMAN PLEKHA5 protein (Fragment) OS=Homo sapien...    34   4.2  
tr|B4DHK5|B4DHK5_HUMAN cDNA FLJ61590, moderately similar to Plec...    34   4.2  

>tr|B5ECG7|B5ECG7_GEOBB Glycogen/starch synthase, ADP-glucose type
           OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 /
           DSM 16622) GN=Gbem_0567 PE=4 SV=1
          Length = 518

 Score = 35.0 bits (79), Expect = 2.5
 Identities = 12/15 (80%), Positives = 12/15 (80%)
 Frame = -2

Query: 453 FDTVGWGTHTWYQSK 409
           FDTVGW  HTWYQ K
Sbjct: 439 FDTVGWAVHTWYQDK 453


>tr|A8B6T4|A8B6T4_GIALA Histidyl-tRNA synthetase OS=Giardia lamblia
           ATCC 50803 GN=GL50803_22808 PE=3 SV=1
          Length = 961

 Score = 34.3 bits (77), Expect = 4.2
 Identities = 17/57 (29%), Positives = 32/57 (56%)
 Frame = +1

Query: 124 KPLLEMSNQIPILYQCEWSVVYEPSSVSPWHLASSGKLGIFELAHK*AKTLGTSDIL 294
           KP++E   +    YQC+  +VYEP++ +P    +   + +FE+ H   K++   +IL
Sbjct: 537 KPVME-KGRFREFYQCDLDIVYEPNTQAPMAADAEVVVIVFEILHALRKSIRNFEIL 592


>tr|Q6NSF8|Q6NSF8_HUMAN PLEKHA5 protein (Fragment) OS=Homo sapiens
           GN=PLEKHA5 PE=2 SV=1
          Length = 320

 Score = 34.3 bits (77), Expect = 4.2
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -1

Query: 208 EILMKAHTPHSTRIDRGWEFDWTFPGGVYYI--NARKLGC 95
           E ++  H   ST +  GWE  +TF G  YYI  N RK+ C
Sbjct: 45  EAVVTGHRRQSTDLPTGWEEAYTFEGARYYINHNERKVTC 84


>tr|B4DHK5|B4DHK5_HUMAN cDNA FLJ61590, moderately similar to
           Pleckstrin homology domain-containing family A member 5
           (Fragment) OS=Homo sapiens PE=2 SV=1
          Length = 1183

 Score = 34.3 bits (77), Expect = 4.2
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -1

Query: 208 EILMKAHTPHSTRIDRGWEFDWTFPGGVYYI--NARKLGC 95
           E ++  H   ST +  GWE  +TF G  YYI  N RK+ C
Sbjct: 45  EAVVTGHRRQSTDLPTGWEEAYTFEGARYYINHNERKVTC 84