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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914457
Clone id YMU001_000059_B05
Library
Length 549
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000059_B05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GTCGTTGTCATTGTACTACTTGTGTTGTGAAGTTTTGAGTGGAATGATCAAGAGGTATTT
CTGGAAACTGCTGTGGATATTTTGTCACTTCAGCATAGCATCGGAACTACAGACAACAGA
AAGCATGCATGGATAGGTGTGTAGAGCATAGCGTGGATGCAAAGTTCAGGGGTGGAGTCC
ATATGGGATGTGAGGCGGTCTAGAAGGCCTCAGGGGTGTGTAGCCCGACACACCATTTCA
TGCTTGGCCAAGGTCCAGCCAAGTGTGACCTGCCTAGTCTATATATATGGCAATCCTTTG
GTTGGATGACAAGTCTATTGTAGTGCTTGTATGTGAGAGAGCTCTCAAGAGAGCCAGCCC
AAGTGGTTTAAGGCAGAGGCATGTGACGCCTACATTCCACTAGAGGCATACGCCGCTTAC
GCTTCATATTTACTCTCTGCTTAGGTGAGTAGCAGCTTGCAGTGTGTGTAGCAAGCTAGG
GAAACCCTTGTATTGTGAACTCCTGCAATGTAGACCACCTTTTATGTTTGTGGGGCTCAA
GTGAATCAC
■■Homology search results ■■ -
sp_hit_id Q758M2
Definition sp|Q758M2|JIP5_ASHGO WD repeat-containing protein JIP5 OS=Ashbya gossypii
Align length 44
Score (bit) 30.4
E-value 6.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914457|Adiantum capillus-veneris mRNA, clone:
YMU001_000059_B05.
         (549 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q758M2|JIP5_ASHGO WD repeat-containing protein JIP5 OS=Ashbya...    30   6.0  

>sp|Q758M2|JIP5_ASHGO WD repeat-containing protein JIP5 OS=Ashbya
           gossypii GN=JIP5 PE=3 SV=2
          Length = 510

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +1

Query: 91  QHSIGTTDNRKHAWIGV*SIAWMQSSGVESIWDVRRSRRPQGCV 222
           +H  G+ D+RK  W  V  +  +++SGV  +W  +R +    C+
Sbjct: 71  KHDAGSKDDRKKLWEVV-EVPGVETSGVSLLWTTKRHKGSVRCI 113
tr_hit_id A0L607
Definition tr|A0L607|A0L607_MAGSM 4Fe-4S ferredoxin, iron-sulfur binding domain protein OS=Magnetococcus sp. (strain MC-1)
Align length 23
Score (bit) 34.3
E-value 4.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914457|Adiantum capillus-veneris mRNA, clone:
YMU001_000059_B05.
         (549 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A0L607|A0L607_MAGSM 4Fe-4S ferredoxin, iron-sulfur binding do...    34   4.5  

>tr|A0L607|A0L607_MAGSM 4Fe-4S ferredoxin, iron-sulfur binding
           domain protein OS=Magnetococcus sp. (strain MC-1)
           GN=Mmc1_0881 PE=4 SV=1
          Length = 349

 Score = 34.3 bits (77), Expect = 4.5
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = -1

Query: 225 GYTPLRPSRPPHIPYGLHP*TLH 157
           GYTP +P  PP I +GLHP  LH
Sbjct: 77  GYTPQQPDLPPMILFGLHPCDLH 99