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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914461
Clone id YMU001_000059_B09
Library
Length 480
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000059_B09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTGGGACAGGCATTGATTGGGGTGCGAGTGTCGGGGGCTCTCGACACGATATGTGGCGCA
TGCCAAGTAGCAGTTACAATGACTACTCAGGGGAGGATAATGTGTCCCAACTACATGTAG
AGGCTTTCTTAAAGTTCAGTTGTGGTAAATGCTTCACACTGCAACCGGGTTTGTTGTATG
TATCGAATAAGTCTTCCTACACTCCTGCAATCATTGTTCGGTCAAGTTGGTCTCTATGAG
ATGATGCAATGGCTTCTTTTTTTCTGGTTGAAGTGGTAAACAACAGACATTATTGGTCTA
ATGTCTCAATTCAGGAGCTGTCGGGATTAATATGTTGGCGATGGGCTAGAATACCATGTG
AAGTAACATTTGTGATTCCGACATCCTGCTCAATATATCATGGTGCTGTTTGTGAGATCC
AACTAGAATTAGTTGCCTATTCCTTCTGAAGAAGCCTTCTAGCCTCAAGGCTGCACACTG
■■Homology search results ■■ -
sp_hit_id Q2TV78
Definition sp|Q2TV78|MSTP9_HUMAN Putative macrophage-stimulating protein MSTP9 OS=Homo sapiens
Align length 39
Score (bit) 31.6
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914461|Adiantum capillus-veneris mRNA, clone:
YMU001_000059_B09.
         (480 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q2TV78|MSTP9_HUMAN Putative macrophage-stimulating protein MS...    32   1.9  
sp|Q54C49|EIF3F_DICDI Eukaryotic translation initiation factor 3...    31   3.3  
sp|A5DCV3|RPB1_PICGU DNA-directed RNA polymerase II subunit RPB1...    31   3.4  
sp|Q8CZE8|GLGB_OCEIH 1,4-alpha-glucan-branching enzyme OS=Oceano...    30   7.4  

>sp|Q2TV78|MSTP9_HUMAN Putative macrophage-stimulating protein MSTP9
           OS=Homo sapiens GN=MSTP9 PE=5 SV=2
          Length = 715

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +3

Query: 318 LSGLICWRWARIPCEVTFVIPTSCSIYHGAVCEIQLELV 434
           +SG   W+W R+PC      P S  IY    C    EL+
Sbjct: 397 MSGTRAWKWLRLPCHDFAPAPASVHIYLRTACTTGGELL 435


>sp|Q54C49|EIF3F_DICDI Eukaryotic translation initiation factor 3
           subunit F OS=Dictyostelium discoideum GN=eif3f PE=3 SV=1
          Length = 284

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
 Frame = -3

Query: 418 ISQTAP*YIEQDVGITNVTS--HGILAHRQHINPDS---S*IETLDQ*CLLFTTSTRKKE 254
           +  + P ++  D G+TN T   H  +AH   +NP+S   S    L    L F       E
Sbjct: 116 MGNSTPIHLTVDTGLTNDTMGIHAYMAHNLSLNPESSLGSYFSQLPLEILTFEAENAGLE 175

Query: 253 AIASSHRDQLDRTMIA 206
           +IA +  DQ   ++++
Sbjct: 176 SIAQTKYDQQSTSLLS 191


>sp|A5DCV3|RPB1_PICGU DNA-directed RNA polymerase II subunit RPB1
           (Fragments) OS=Pichia guilliermondii GN=RPB1 PE=3 SV=2
          Length = 1579

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
 Frame = -1

Query: 336 NILIPTAPELRH*TNNVCCLPLQ---PEKKKPLHHLIETNL 223
           N+ +P +PE R   + +C +PLQ   P+  KP+  +++  L
Sbjct: 492 NLHVPQSPETRAELSEICAVPLQIVSPQSNKPVMGIVQDTL 532


>sp|Q8CZE8|GLGB_OCEIH 1,4-alpha-glucan-branching enzyme
           OS=Oceanobacillus iheyensis GN=glgB PE=3 SV=1
          Length = 637

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 22/70 (31%), Positives = 31/70 (44%)
 Frame = +3

Query: 3   GTGIDWGASVGGSRHDMWRMPSSSYNDYSGEDNVSQLHVEAFLKFSCGKCFTLQPGLLYV 182
           G  +D  AS+     D +      YN Y GE+N   L   AFL+      F+  PG L +
Sbjct: 303 GLRVDAVASMLYLNFDRYDEEEKIYNTYGGEEN---LEAFAFLRKLNKVVFSYIPGALMM 359

Query: 183 SNKSSYTPAI 212
           +  SS  P +
Sbjct: 360 AEDSSDLPLV 369
tr_hit_id A9RJH5
Definition tr|A9RJH5|A9RJH5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 78
Score (bit) 65.5
E-value 1.0e-09
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914461|Adiantum capillus-veneris mRNA, clone:
YMU001_000059_B09.
         (480 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RJH5|A9RJH5_PHYPA Predicted protein OS=Physcomitrella paten...    65   1e-09
tr|A7NSR1|A7NSR1_VITVI Chromosome chr18 scaffold_1, whole genome...    52   2e-05
tr|Q7XE43|Q7XE43_ORYSJ Expressed protein OS=Oryza sativa subsp. ...    48   2e-04
tr|B8BH29|B8BH29_ORYSI Putative uncharacterized protein OS=Oryza...    48   2e-04
tr|A3C537|A3C537_ORYSJ Putative uncharacterized protein OS=Oryza...    48   2e-04
tr|Q9SXB7|Q9SXB7_ARATH T28P6.3 protein (Putative uncharacterized...    47   6e-04
tr|A2YH35|A2YH35_ORYSI Putative uncharacterized protein OS=Oryza...    39   0.098
tr|Q5YLY4|Q5YLY4_ORYSJ Os06g0724200 protein OS=Oryza sativa subs...    37   0.64 
tr|B0TYQ1|B0TYQ1_FRAP2 Putative uncharacterized protein OS=Franc...    34   3.2  
tr|A7JL42|A7JL42_FRANO Putative uncharacterized protein OS=Franc...    34   3.2  
tr|B7FRZ4|B7FRZ4_PHATR Predicted protein OS=Phaeodactylum tricor...    34   4.1  
tr|A2BID8|A2BID8_DANRE Novel protein similar to vertebrate amylo...    33   7.0  
tr|B4K5S8|B4K5S8_DROMO GI22939 OS=Drosophila mojavensis GN=GI229...    33   9.2  

>tr|A9RJH5|A9RJH5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_175499 PE=4 SV=1
          Length = 421

 Score = 65.5 bits (158), Expect = 1e-09
 Identities = 38/78 (48%), Positives = 45/78 (57%)
 Frame = +3

Query: 3   GTGIDWGASVGGSRHDMWRMPSSSYNDYSGEDNVSQLHVEAFLKFSCGKCFTLQPGLLYV 182
           GT   WG  VGGS  DM                  QL +EAFLK S G+ FTLQPGL+Y+
Sbjct: 363 GTTAGWGLCVGGSC-DM------------------QLQMEAFLKLSMGRGFTLQPGLVYL 403

Query: 183 SNKSSYTPAIIVRSSWSL 236
            NK S TPA ++RSSW+L
Sbjct: 404 LNKQSQTPAFVLRSSWAL 421


>tr|A7NSR1|A7NSR1_VITVI Chromosome chr18 scaffold_1, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00014363001
           PE=4 SV=1
          Length = 420

 Score = 51.6 bits (122), Expect = 2e-05
 Identities = 27/75 (36%), Positives = 40/75 (53%)
 Frame = +3

Query: 12  IDWGASVGGSRHDMWRMPSSSYNDYSGEDNVSQLHVEAFLKFSCGKCFTLQPGLLYVSNK 191
           + W  SV  S  + +    S         +      EA LKF+ GK F+LQPGL+YV + 
Sbjct: 346 LQWALSVSDSPENEFGWSLSLGGIIKRPTSWDHFQAEASLKFNLGKRFSLQPGLIYVMDG 405

Query: 192 SSYTPAIIVRSSWSL 236
           ++  P +++RSSWSL
Sbjct: 406 NAQIPVVMLRSSWSL 420


>tr|Q7XE43|Q7XE43_ORYSJ Expressed protein OS=Oryza sativa subsp.
           japonica GN=LOC_Os10g30210 PE=4 SV=1
          Length = 526

 Score = 48.1 bits (113), Expect = 2e-04
 Identities = 25/73 (34%), Positives = 35/73 (47%)
 Frame = +3

Query: 12  IDWGASVGGSRHDMWRMPSSSYNDYSGEDNVSQLHVEAFLKFSCGKCFTLQPGLLYVSNK 191
           + WG  +GG+                 E N  + HVE FL F  GK   +QPGL+   + 
Sbjct: 468 LGWGVRIGGT----------------AERNAHRPHVEGFLSFDLGKGGRVQPGLVIAMDG 511

Query: 192 SSYTPAIIVRSSW 230
              TPA+++RSSW
Sbjct: 512 DKRTPALVLRSSW 524


>tr|B8BH29|B8BH29_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_33752 PE=4 SV=1
          Length = 522

 Score = 48.1 bits (113), Expect = 2e-04
 Identities = 25/73 (34%), Positives = 35/73 (47%)
 Frame = +3

Query: 12  IDWGASVGGSRHDMWRMPSSSYNDYSGEDNVSQLHVEAFLKFSCGKCFTLQPGLLYVSNK 191
           + WG  +GG+                 E N  + HVE FL F  GK   +QPGL+   + 
Sbjct: 464 LGWGVRIGGT----------------AERNAHRPHVEGFLSFDLGKGGRVQPGLVIAMDG 507

Query: 192 SSYTPAIIVRSSW 230
              TPA+++RSSW
Sbjct: 508 DKRTPALVLRSSW 520


>tr|A3C537|A3C537_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_030409 PE=4 SV=1
          Length = 526

 Score = 48.1 bits (113), Expect = 2e-04
 Identities = 25/73 (34%), Positives = 35/73 (47%)
 Frame = +3

Query: 12  IDWGASVGGSRHDMWRMPSSSYNDYSGEDNVSQLHVEAFLKFSCGKCFTLQPGLLYVSNK 191
           + WG  +GG+                 E N  + HVE FL F  GK   +QPGL+   + 
Sbjct: 468 LGWGVRIGGT----------------AERNAHRPHVEGFLSFDLGKGGRVQPGLVIAMDG 511

Query: 192 SSYTPAIIVRSSW 230
              TPA+++RSSW
Sbjct: 512 DKRTPALVLRSSW 524


>tr|Q9SXB7|Q9SXB7_ARATH T28P6.3 protein (Putative uncharacterized
           protein At1g11320) OS=Arabidopsis thaliana GN=At1g11320
           PE=2 SV=1
          Length = 424

 Score = 46.6 bits (109), Expect = 6e-04
 Identities = 26/75 (34%), Positives = 36/75 (48%)
 Frame = +3

Query: 12  IDWGASVGGSRHDMWRMPSSSYNDYSGEDNVSQLHVEAFLKFSCGKCFTLQPGLLYVSNK 191
           + WG SVGG                 G  N  Q  VE++LKF+ G  F L P L+Y +N 
Sbjct: 364 VGWGMSVGGV--------------VDGSRNHDQFQVESYLKFNIGDRFRLSPCLVYHTNS 409

Query: 192 SSYTPAIIVRSSWSL 236
              T  ++++S WSL
Sbjct: 410 DGRTIGLMLKSHWSL 424


>tr|A2YH35|A2YH35_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_24499 PE=4 SV=1
          Length = 431

 Score = 39.3 bits (90), Expect = 0.098
 Identities = 19/48 (39%), Positives = 28/48 (58%)
 Frame = +3

Query: 93  EDNVSQLHVEAFLKFSCGKCFTLQPGLLYVSNKSSYTPAIIVRSSWSL 236
           E +  +L +E FL    GK  TLQPGL++  +     PA++ +SSW L
Sbjct: 384 EGSPERLQLEGFLNVHLGKKATLQPGLMFNIDGRRCAPALVFQSSWFL 431


>tr|Q5YLY4|Q5YLY4_ORYSJ Os06g0724200 protein OS=Oryza sativa subsp.
           japonica GN=P0535F09.33 PE=4 SV=1
          Length = 430

 Score = 36.6 bits (83), Expect = 0.64
 Identities = 19/48 (39%), Positives = 28/48 (58%)
 Frame = +3

Query: 93  EDNVSQLHVEAFLKFSCGKCFTLQPGLLYVSNKSSYTPAIIVRSSWSL 236
           E +  +L +E FL    GK  TLQPGL++  +     PA++ +SSW L
Sbjct: 384 EGSPERLQLEGFLNVHLGKA-TLQPGLMFNIDGRRCAPALVFQSSWFL 430


>tr|B0TYQ1|B0TYQ1_FRAP2 Putative uncharacterized protein
           OS=Francisella philomiragia subsp. philomiragia (strain
           ATCC 25017) GN=Fphi_0198 PE=4 SV=1
          Length = 323

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +3

Query: 84  YSGEDNVSQLHVEAFLKFSCGKCFTLQPGLLYVSNKSSYTPAII 215
           Y  +DN++ LH+   +KF      +L+  + Y+S K+ YTP ++
Sbjct: 243 YLSKDNLANLHIGQTIKFITPNNKSLEAKVSYISQKAEYTPPLL 286


>tr|A7JL42|A7JL42_FRANO Putative uncharacterized protein
           OS=Francisella novicida GA99-3548 GN=FTDG_00220 PE=4
           SV=1
          Length = 267

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +3

Query: 84  YSGEDNVSQLHVEAFLKFSCGKCFTLQPGLLYVSNKSSYTPAII 215
           Y  +DN++ LH+   +KF      +L+  + Y+S K+ YTP ++
Sbjct: 187 YLSKDNLANLHIGQTIKFITPNNKSLEAKVSYISQKAEYTPPLL 230