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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914463
Clone id YMU001_000059_B11
Library
Length 587
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000059_B11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTTTTTTTTTTTTTTTTTGTAATGTAAAATCTTTTCTAGCATTTGGAACCCGCATTAATT
GTTATTTGTGCAAGTGCCTGTACTTTTTTGTCTCTGCTTCTATTGGGAACCCCATACAAC
CCTTGTTCCCTACAGCTATTCACAAGGTATTCAAGAAGCATCATTAGACAAGAAATCATT
GTTCTGCAGTTCACACCTGCTAATCCTCCCTAACTACACGAAAGGTAAGTTACTCTTCCT
CATCTTCCTCTTCTACATTCTGCTCTTGAACTTCACTGGTTGGATTAGAGGACAGTTCCT
TGGCAAAATTTGCCTGCAAGTCCTCCAGCTGAAGTGCTAGTTTTTTCTCTTCATCAATAG
CCACTCTCAAGTCAATTTCTGCTACCATTTGCTCCAACTCCGCATCCGCAAAGTCCTTTG
CAGCGTTTTCATTCTTTGTCTTGTAATCCTTGCATTTCATTGTTTCAAAAGCTACCTTCT
TGGCAGCCACAAGCCATTGTTGGGCAAGATATCCTATAGGTGCTTCCTCTGAAAGCTGCA
TTTCAGTTAGACCATCCAAGAAAATATCAGATAGGTCCCACTTTTTT
■■Homology search results ■■ -
sp_hit_id Q9Y2L6
Definition sp|Q9Y2L6|FRM4B_HUMAN FERM domain-containing protein 4B OS=Homo sapiens
Align length 90
Score (bit) 35.0
E-value 0.26
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914463|Adiantum capillus-veneris mRNA, clone:
YMU001_000059_B11.
         (569 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9Y2L6|FRM4B_HUMAN FERM domain-containing protein 4B OS=Homo ...    35   0.26 
sp|A7XYJ6|SOBPB_DANRE Sine oculis-binding protein homolog OS=Dan...    34   0.58 
sp|P07806|SYV_YEAST Valyl-tRNA synthetase, mitochondrial OS=Sacc...    33   0.99 
sp|Q920B0|FRM4B_MOUSE FERM domain-containing protein 4B OS=Mus m...    33   1.3  
sp|Q9C093|SPEF2_HUMAN Sperm flagellar protein 2 OS=Homo sapiens ...    32   2.9  
sp|Q9ESV1|LUZP1_RAT Leucine zipper protein 1 OS=Rattus norvegicu...    32   2.9  
sp|Q8R4U7|LUZP1_MOUSE Leucine zipper protein 1 OS=Mus musculus G...    31   3.8  

>sp|Q9Y2L6|FRM4B_HUMAN FERM domain-containing protein 4B OS=Homo
           sapiens GN=FRMD4B PE=1 SV=2
          Length = 980

 Score = 35.0 bits (79), Expect = 0.26
 Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
 Frame = -2

Query: 511 EEAPIGYLAQQWLV-AAKKVAFETMKCKDYKTKNENAAKDFADA-----ELEQMVAEIDL 350
           +E    +L QQ LV AAKK+A E   CK  K K +   +D+ DA     E+E  + E  +
Sbjct: 447 QELESNFLIQQKLVEAAKKLANEPDLCKTVKKKRK---QDYTDAMKKLQEIENAINEYRI 503

Query: 349 RVAIDEEKKLALQLEDLQANFAKELSSNPT 260
           R      +K  +  ED+  + +  LS   T
Sbjct: 504 RCGKKPSQKATVLPEDIIPSESSSLSDTTT 533


>sp|A7XYJ6|SOBPB_DANRE Sine oculis-binding protein homolog OS=Danio
           rerio GN=sobpb PE=2 SV=1
          Length = 668

 Score = 33.9 bits (76), Expect = 0.58
 Identities = 24/65 (36%), Positives = 28/65 (43%)
 Frame = +1

Query: 220 PHLPLLHSALELHWLD*RTVPWQNLPASPPAEVLVFSLHQ*PLSSQFLLPFAPTPHPQSP 399
           PH+PL      LH    R+ P  NLP +PP           PLS    +PFAP PH   P
Sbjct: 349 PHMPLPFIRPPLHAQSLRS-PTPNLPHNPPH----------PLSPTQRVPFAPPPHYPLP 397

Query: 400 LQRFH 414
               H
Sbjct: 398 YLPLH 402


>sp|P07806|SYV_YEAST Valyl-tRNA synthetase, mitochondrial
            OS=Saccharomyces cerevisiae GN=VAS1 PE=1 SV=2
          Length = 1104

 Score = 33.1 bits (74), Expect = 0.99
 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = -2

Query: 448  ETMKCKDYKTKNENAAKDFADAELEQMVAEID-LRVAIDEEKKLAL 314
            +T+  KDY+TK    AK+   ++L+  VAEI+ L   I+  K+L L
Sbjct: 1059 QTINSKDYETKANTQAKEANKSKLDNTVAEIEGLEATIENLKRLKL 1104


>sp|Q920B0|FRM4B_MOUSE FERM domain-containing protein 4B OS=Mus
           musculus GN=Frmd4b PE=1 SV=1
          Length = 981

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
 Frame = -2

Query: 511 EEAPIGYLAQQWLV-AAKKVAFETMKCKDYKTKNENAAKDFADA-----ELEQMVAEIDL 350
           +E    +L QQ LV AAKK+A E   CK  K K +   +D+ DA     E+E  + E  +
Sbjct: 447 QELESNFLIQQKLVEAAKKLASEPDLCKTVKKKRK---QDYTDAVKRLQEIENSINEYRI 503

Query: 349 RVAIDEEKKLA-LQLEDLQANFAKELSSNPT 260
           R      +K A +  ED+  + +  LS   T
Sbjct: 504 RCGKKPSQKAAVVPPEDIIPSESSSLSDTTT 534


>sp|Q9C093|SPEF2_HUMAN Sperm flagellar protein 2 OS=Homo sapiens
            GN=SPEF2 PE=1 SV=2
          Length = 1822

 Score = 31.6 bits (70), Expect = 2.9
 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
 Frame = -2

Query: 469  AAKKVAFETMKCKDYKTKNENAAKDFADA--------ELEQMVAEIDLRVAIDEEKKLAL 314
            A KKV  E  K K    K +  +   A+A        E+ ++  + +LRV I EE   AL
Sbjct: 1297 ANKKVKKEPPKKKQEDKKPKGKSPPMAEATPVIVTTEEIAEIKRKNELRVKIKEEHLAAL 1356

Query: 313  QLEDLQANFAKEL 275
            Q E++   F  EL
Sbjct: 1357 QFEEIATQFRLEL 1369


>sp|Q9ESV1|LUZP1_RAT Leucine zipper protein 1 OS=Rattus norvegicus
           GN=Luzp1 PE=2 SV=1
          Length = 1051

 Score = 31.6 bits (70), Expect = 2.9
 Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
 Frame = -2

Query: 463 KKVAFETM-KCKDYKTKNE--NAAKDFADAELEQMVAEIDLRVAIDEE-KKLALQLEDLQ 296
           K+V  ET  K ++ K +N+  N  KD  + E+E++  +I    +++EE KK+  +  DLQ
Sbjct: 266 KQVENETRDKSENEKNRNQEDNKVKDL-NQEIEKLKTQIKHFESLEEELKKMRAKNNDLQ 324

Query: 295 ANFAKELSSN 266
            N+  EL+ N
Sbjct: 325 DNYLTELNKN 334


>sp|Q8R4U7|LUZP1_MOUSE Leucine zipper protein 1 OS=Mus musculus
           GN=Luzp1 PE=1 SV=2
          Length = 1068

 Score = 31.2 bits (69), Expect = 3.8
 Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
 Frame = -2

Query: 463 KKVAFETM-KCKDYKTKNE--NAAKDFADAELEQMVAEIDLRVAIDEE-KKLALQLEDLQ 296
           K+V  ET  K ++ K +N+  N  KD  + E+E++  +I    +++EE KK+  +  DLQ
Sbjct: 266 KQVENETRDKSENEKNRNQEDNKVKDL-NQEIEKLKTQIKHFESLEEELKKMRAKNNDLQ 324

Query: 295 ANFAKELSSN 266
            N+  EL+ N
Sbjct: 325 DNYLTELNRN 334
tr_hit_id B7AWZ5
Definition tr|B7AWZ5|B7AWZ5_9BACE Putative uncharacterized protein OS=Bacteroides pectinophilus ATCC 43243
Align length 82
Score (bit) 35.0
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914463|Adiantum capillus-veneris mRNA, clone:
YMU001_000059_B11.
         (569 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B7AWZ5|B7AWZ5_9BACE Putative uncharacterized protein OS=Bacte...    35   2.9  
tr|A2FVQ8|A2FVQ8_TRIVA Putative uncharacterized protein OS=Trich...    35   2.9  
tr|Q2TB00|Q2TB00_HUMAN FRMD4B protein (Fragment) OS=Homo sapiens...    35   2.9  
tr|Q9NG19|Q9NG19_CRAGI Metallothionein OS=Crassostrea gigas GN=m...    35   3.8  
tr|B0E7I5|B0E7I5_ENTDI Putative uncharacterized protein OS=Entam...    34   5.0  
tr|Q661N9|Q661N9_BORGA Mg2+ transport protein OS=Borrelia garini...    34   6.5  
tr|Q0SND3|Q0SND3_BORAP Mg2+ transport protein OS=Borrelia afzeli...    34   6.5  
tr|O50166|O50166_BORBU Mg2+ transport protein (MgtE) OS=Borrelia...    34   6.5  
tr|P94251|P94251_BORBU Magnesium ion transporter MgtE OS=Borreli...    34   6.5  
tr|B7XUW1|B7XUW1_BORGA Magnesium transporter OS=Borrelia garinii...    34   6.5  
tr|B7XT49|B7XT49_BORGA Magnesium transporter OS=Borrelia garinii...    34   6.5  
tr|B7J1V2|B7J1V2_BORBU Magnesium transporter OS=Borrelia burgdor...    34   6.5  
tr|B4DHD5|B4DHD5_HUMAN cDNA FLJ57979, highly similar to FERM dom...    34   6.5  
tr|B0M0M2|B0M0M2_CAEEL Uncoordinated protein 82, isoform b OS=Ca...    33   8.5  
tr|B0M0M1|B0M0M1_CAEEL Uncoordinated protein 82, isoform a OS=Ca...    33   8.5  

>tr|B7AWZ5|B7AWZ5_9BACE Putative uncharacterized protein
           OS=Bacteroides pectinophilus ATCC 43243 GN=BACPEC_03245
           PE=4 SV=1
          Length = 153

 Score = 35.0 bits (79), Expect = 2.9
 Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
 Frame = -2

Query: 559 DLSDIFLDGLTEMQLSEEAPIGYLAQQWLVAAKKVAFETMKCKDYKTKNENAAKDFADAE 380
           +L+D+ L    E +L++E     +A + ++ +KK+       KD +T    + K+ A+A 
Sbjct: 48  NLNDLKLTKAHEAKLAKEELDAAIALKEVIESKKIVLSIKGGKDGRTFGSVSGKEIAEAA 107

Query: 379 LEQMVAEID-LRVAIDEEKKLA 317
            EQ   E+D  ++ IDE  ++A
Sbjct: 108 KEQAGLELDKKKIKIDEPIRMA 129


>tr|A2FVQ8|A2FVQ8_TRIVA Putative uncharacterized protein
           OS=Trichomonas vaginalis G3 GN=TVAG_479180 PE=4 SV=1
          Length = 1297

 Score = 35.0 bits (79), Expect = 2.9
 Identities = 16/62 (25%), Positives = 35/62 (56%)
 Frame = -2

Query: 460 KVAFETMKCKDYKTKNENAAKDFADAELEQMVAEIDLRVAIDEEKKLALQLEDLQANFAK 281
           KV+  + K ++ K +N+N  + FA+A+ E + + + L  +  E+K++  ++ D      K
Sbjct: 541 KVSELSQKLENEKLENKNLTEKFAEAKSESLASVLQLNQSQSEKKQIEKEISDYHKKIEK 600

Query: 280 EL 275
           E+
Sbjct: 601 EI 602


>tr|Q2TB00|Q2TB00_HUMAN FRMD4B protein (Fragment) OS=Homo sapiens
           GN=FRMD4B PE=2 SV=1
          Length = 546

 Score = 35.0 bits (79), Expect = 2.9
 Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
 Frame = -2

Query: 511 EEAPIGYLAQQWLV-AAKKVAFETMKCKDYKTKNENAAKDFADA-----ELEQMVAEIDL 350
           +E    +L QQ LV AAKK+A E   CK  K K +   +D+ DA     E+E  + E  +
Sbjct: 13  QELESNFLIQQKLVEAAKKLANEPDLCKTVKKKRK---QDYTDAMKKLQEIENAINEYRI 69

Query: 349 RVAIDEEKKLALQLEDLQANFAKELSSNPT 260
           R      +K  +  ED+  + +  LS   T
Sbjct: 70  RCGKKPSQKATVLPEDIIPSESSSLSDTTT 99


>tr|Q9NG19|Q9NG19_CRAGI Metallothionein OS=Crassostrea gigas GN=mt
           PE=4 SV=1
          Length = 107

 Score = 34.7 bits (78), Expect = 3.8
 Identities = 24/74 (32%), Positives = 29/74 (39%), Gaps = 3/74 (4%)
 Frame = -1

Query: 491 SCPTMACGCQEGSF*NNEMQGLQDKE*KRCKGLCGCGVGANGSRN*L---ESGY**REKT 321
           SCP   C C  G    +  +    K    C G CGCG G  G  N     +SG   + K 
Sbjct: 18  SCPATGCKCGPGCKCGDGCKCSGCKVKCNCSGSCGCGKGCTGPENCKCANDSGCGCKVKC 77

Query: 320 STSAGGLAGKFCQG 279
           + S     GK C G
Sbjct: 78  NCSGSCGCGKGCTG 91


>tr|B0E7I5|B0E7I5_ENTDI Putative uncharacterized protein
           OS=Entamoeba dispar SAW760 GN=EDI_349420 PE=4 SV=1
          Length = 1279

 Score = 34.3 bits (77), Expect = 5.0
 Identities = 14/37 (37%), Positives = 25/37 (67%)
 Frame = -1

Query: 146 MMLLEYLVNSCREQGLYGVPNRSRDKKVQALAQITIN 36
           MML+EY +N     G++ +PN S + K++AL+ + I+
Sbjct: 547 MMLIEYYINMNYLDGIFNIPNISTELKLKALSAVAID 583


>tr|Q661N9|Q661N9_BORGA Mg2+ transport protein OS=Borrelia garinii
           GN=mgtE PE=4 SV=1
          Length = 454

 Score = 33.9 bits (76), Expect = 6.5
 Identities = 22/68 (32%), Positives = 35/68 (51%)
 Frame = -2

Query: 463 KKVAFETMKCKDYKTKNENAAKDFADAELEQMVAEIDLRVAIDEEKKLALQLEDLQANFA 284
           KK+A ET    D  TKN+  A  F + E+ +M+ E++L   ID        LE++ AN  
Sbjct: 52  KKIAVETFSNFDQSTKNK-LANSFTNKEISEMIDELNLDDVID-------LLEEVPANVV 103

Query: 283 KELSSNPT 260
           +   ++ T
Sbjct: 104 QRFLASST 111


>tr|Q0SND3|Q0SND3_BORAP Mg2+ transport protein OS=Borrelia afzelii
           (strain PKo) GN=mgtE PE=4 SV=1
          Length = 454

 Score = 33.9 bits (76), Expect = 6.5
 Identities = 22/68 (32%), Positives = 35/68 (51%)
 Frame = -2

Query: 463 KKVAFETMKCKDYKTKNENAAKDFADAELEQMVAEIDLRVAIDEEKKLALQLEDLQANFA 284
           KK+A ET    D  TKN+  A  F + E+ +M+ E++L   ID        LE++ AN  
Sbjct: 52  KKIAVETFSNFDQSTKNK-LANSFTNKEISEMIDELNLDDVID-------LLEEVPANVV 103

Query: 283 KELSSNPT 260
           +   ++ T
Sbjct: 104 QRFLASST 111


>tr|O50166|O50166_BORBU Mg2+ transport protein (MgtE) OS=Borrelia
           burgdorferi GN=BB_0380 PE=4 SV=1
          Length = 454

 Score = 33.9 bits (76), Expect = 6.5
 Identities = 22/68 (32%), Positives = 35/68 (51%)
 Frame = -2

Query: 463 KKVAFETMKCKDYKTKNENAAKDFADAELEQMVAEIDLRVAIDEEKKLALQLEDLQANFA 284
           KK+A ET    D  TKN+  A  F + E+ +M+ E++L   ID        LE++ AN  
Sbjct: 52  KKIAVETFSNFDQSTKNK-LANSFTNKEISEMIDELNLDDVID-------LLEEVPANVV 103

Query: 283 KELSSNPT 260
           +   ++ T
Sbjct: 104 QRFLASST 111


>tr|P94251|P94251_BORBU Magnesium ion transporter MgtE OS=Borrelia
           burgdorferi GN=mgtE PE=4 SV=1
          Length = 454

 Score = 33.9 bits (76), Expect = 6.5
 Identities = 22/68 (32%), Positives = 35/68 (51%)
 Frame = -2

Query: 463 KKVAFETMKCKDYKTKNENAAKDFADAELEQMVAEIDLRVAIDEEKKLALQLEDLQANFA 284
           KK+A ET    D  TKN+  A  F + E+ +M+ E++L   ID        LE++ AN  
Sbjct: 52  KKIAVETFSNFDQSTKNK-LANSFTNKEISEMIDELNLDDVID-------LLEEVPANVV 103

Query: 283 KELSSNPT 260
           +   ++ T
Sbjct: 104 QRFLASST 111


>tr|B7XUW1|B7XUW1_BORGA Magnesium transporter OS=Borrelia garinii
           Far04 GN=mgtE PE=4 SV=1
          Length = 454

 Score = 33.9 bits (76), Expect = 6.5
 Identities = 22/68 (32%), Positives = 35/68 (51%)
 Frame = -2

Query: 463 KKVAFETMKCKDYKTKNENAAKDFADAELEQMVAEIDLRVAIDEEKKLALQLEDLQANFA 284
           KK+A ET    D  TKN+  A  F + E+ +M+ E++L   ID        LE++ AN  
Sbjct: 52  KKIAVETFSNFDQSTKNK-LANSFTNKEISEMIDELNLDDVID-------LLEEVPANVV 103

Query: 283 KELSSNPT 260
           +   ++ T
Sbjct: 104 QRFLASST 111