NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914465
Clone id YMU001_000059_C01
Library
Length 374
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000059_C01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CATGTGGGCATATTGGCGCGCCACGTGTGACCTCCTTGCTGACTTGGCCTCGGCCTCCAA
AAACTTTTAAAGGAACTTCTATTTTTTAAAAATCTTTCCCCTGTAACCCAAGCCTTGCCA
TTTGAGGCTTGAGGACCCAACTGACCAGCCGTAAAATCATGCCCGCAGATCGGGTTCCCG
ACTTCGTCTTGGGCAAGCAACGCCGCTTCTTAGAATATGCCGAGCACCTCAATCGANCTG
ACCAAAACGGCAAAAATTCATCTGCTACCACACTACATCTAACTGGCACCAACTTCAATT
TTGCAATAGCTTCGCGCTCCGGACTCCATTTGACGTACTGTCACCTCCTATGTCCTTCAC
ATACCGTATACTCT
■■Homology search results ■■ -
sp_hit_id Q01728
Definition sp|Q01728|NAC1_RAT Sodium/calcium exchanger 1 OS=Rattus norvegicus
Align length 20
Score (bit) 31.6
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914465|Adiantum capillus-veneris mRNA, clone:
YMU001_000059_C01.
         (374 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q01728|NAC1_RAT Sodium/calcium exchanger 1 OS=Rattus norvegic...    32   1.3  
sp|P70414|NAC1_MOUSE Sodium/calcium exchanger 1 OS=Mus musculus ...    32   1.3  
sp|P32418|NAC1_HUMAN Sodium/calcium exchanger 1 OS=Homo sapiens ...    32   1.3  
sp|P48767|NAC1_FELCA Sodium/calcium exchanger 1 OS=Felis silvest...    32   1.3  
sp|P48766|NAC1_CAVPO Sodium/calcium exchanger 1 OS=Cavia porcell...    32   1.3  
sp|P23685|NAC1_CANFA Sodium/calcium exchanger 1 OS=Canis familia...    32   1.3  
sp|P48765|NAC1_BOVIN Sodium/calcium exchanger 1 OS=Bos taurus GN...    32   1.3  
sp|Q5GW71|CAPP_XANOR Phosphoenolpyruvate carboxylase OS=Xanthomo...    30   3.7  
sp|Q2NZE4|CAPP_XANOM Phosphoenolpyruvate carboxylase OS=Xanthomo...    30   3.7  
sp|Q87BI2|RLUB_XYLFT Ribosomal large subunit pseudouridine synth...    30   4.9  
sp|Q27746|DNMT1_PARLI DNA (cytosine-5)-methyltransferase PliMCI ...    30   4.9  
sp|P48768|NAC2_RAT Sodium/calcium exchanger 2 OS=Rattus norvegic...    29   6.3  
sp|Q9UPR5|NAC2_HUMAN Sodium/calcium exchanger 2 OS=Homo sapiens ...    29   6.3  
sp|Q01819|CONN_DROME Connectin OS=Drosophila melanogaster GN=Con...    29   6.3  
sp|Q9LD55|EIF3A_ARATH Eukaryotic translation initiation factor 3...    29   8.3  
sp|Q8PP82|CAPP_XANAC Phosphoenolpyruvate carboxylase OS=Xanthomo...    29   8.3  

>sp|Q01728|NAC1_RAT Sodium/calcium exchanger 1 OS=Rattus norvegicus
           GN=Slc8a1 PE=2 SV=3
          Length = 971

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -1

Query: 170 ICGHDFTAGQLGPQASNGKA 111
           +CGH+FTAG LGP    G A
Sbjct: 153 VCGHNFTAGDLGPSTIVGSA 172


>sp|P70414|NAC1_MOUSE Sodium/calcium exchanger 1 OS=Mus musculus
           GN=Slc8a1 PE=2 SV=1
          Length = 970

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -1

Query: 170 ICGHDFTAGQLGPQASNGKA 111
           +CGH+FTAG LGP    G A
Sbjct: 153 VCGHNFTAGDLGPSTIVGSA 172


>sp|P32418|NAC1_HUMAN Sodium/calcium exchanger 1 OS=Homo sapiens
           GN=SLC8A1 PE=1 SV=3
          Length = 973

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -1

Query: 170 ICGHDFTAGQLGPQASNGKA 111
           +CGH+FTAG LGP    G A
Sbjct: 156 VCGHNFTAGDLGPSTIVGSA 175


>sp|P48767|NAC1_FELCA Sodium/calcium exchanger 1 OS=Felis silvestris
           catus GN=SLC8A1 PE=2 SV=1
          Length = 970

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -1

Query: 170 ICGHDFTAGQLGPQASNGKA 111
           +CGH+FTAG LGP    G A
Sbjct: 153 VCGHNFTAGDLGPSTIVGSA 172


>sp|P48766|NAC1_CAVPO Sodium/calcium exchanger 1 OS=Cavia porcellus
           GN=SLC8A1 PE=2 SV=1
          Length = 970

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -1

Query: 170 ICGHDFTAGQLGPQASNGKA 111
           +CGH+FTAG LGP    G A
Sbjct: 153 VCGHNFTAGDLGPSTIVGSA 172


>sp|P23685|NAC1_CANFA Sodium/calcium exchanger 1 OS=Canis familiaris
           GN=SLC8A1 PE=1 SV=1
          Length = 970

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -1

Query: 170 ICGHDFTAGQLGPQASNGKA 111
           +CGH+FTAG LGP    G A
Sbjct: 153 VCGHNFTAGDLGPSTIVGSA 172


>sp|P48765|NAC1_BOVIN Sodium/calcium exchanger 1 OS=Bos taurus
           GN=SLC8A1 PE=1 SV=1
          Length = 970

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -1

Query: 170 ICGHDFTAGQLGPQASNGKA 111
           +CGH+FTAG LGP    G A
Sbjct: 153 VCGHNFTAGDLGPSTIVGSA 172


>sp|Q5GW71|CAPP_XANOR Phosphoenolpyruvate carboxylase OS=Xanthomonas
           oryzae pv. oryzae GN=ppc PE=3 SV=1
          Length = 904

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
 Frame = -2

Query: 331 KWSPEREAIAKLKLVPVRCSVVADEFLPFWSXRLRCSAYSKKRRCL---PKTKSGTRSAG 161
           +W P  + +A+   V  R  V A EF+ ++  RL       +R  L   P  + G  +A 
Sbjct: 678 RWRPVMDLVAERSTVAYRAFVAAPEFMQYF--RLATPIDVIERMTLGSRPSRRLGQDAAL 735

Query: 160 MILRLVSWVLKPQMARLGLQG 98
             LR + WV     AR  + G
Sbjct: 736 SNLRAIPWVFAWSQARAVIPG 756


>sp|Q2NZE4|CAPP_XANOM Phosphoenolpyruvate carboxylase OS=Xanthomonas
           oryzae pv. oryzae (strain MAFF 311018) GN=ppc PE=3 SV=1
          Length = 904

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
 Frame = -2

Query: 331 KWSPEREAIAKLKLVPVRCSVVADEFLPFWSXRLRCSAYSKKRRCL---PKTKSGTRSAG 161
           +W P  + +A+   V  R  V A EF+ ++  RL       +R  L   P  + G  +A 
Sbjct: 678 RWRPVMDLVAERSTVAYRAFVAAPEFMQYF--RLATPIDVIERMTLGSRPSRRLGQDAAL 735

Query: 160 MILRLVSWVLKPQMARLGLQG 98
             LR + WV     AR  + G
Sbjct: 736 SNLRAIPWVFAWSQARAVIPG 756


>sp|Q87BI2|RLUB_XYLFT Ribosomal large subunit pseudouridine synthase
           B OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964)
           GN=rluB PE=3 SV=1
          Length = 476

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 19/47 (40%), Positives = 23/47 (48%)
 Frame = +3

Query: 108 PSLAI*GLRTQLTSRKIMPADRVPDFVLGKQRRFLEYAEHLNRXDQN 248
           P   +  LRTQL   K MP       V+G QRR  +   H+NR D N
Sbjct: 259 PKTQVEALRTQLKLEKDMPLALTLQPVIG-QRRSAKATLHVNRNDNN 304
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914465|Adiantum capillus-veneris mRNA, clone:
YMU001_000059_C01.
         (374 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******