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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914472
Clone id YMU001_000059_C09
Library
Length 554
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000059_C09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTTTTTTTTTTTTTTGTTAAAGGGGAGCTGCGTAGAGCGGAGCAATCAAGATGTGTAGGT
CTCTTCTTCTTCTTGTCTTGTCGCATAGATCTCTGAGGCGTCTTCCCATGCTGCAATGCA
CCTATGCATGTGATTGCTCTCTCTCTCTTCCCACGATGTTAAAATTCTCTTCTTCTCTCT
CTCTCACAGATGCGCAAGCGGCAGAACTCTCTCTGTCAGCCCTTCTGTTCCCATTCGCCT
GCAACAAAGAGCCCTGTCCCATTTTCCAGTGTCGGGGATAGCAAGAGCTGCTAGCCATCA
TGCACAAGCCCAACATGATTCAAACAGCCTGCTCTTCACTGTCTTGCAACACAACCATCC
ACAAACTGTCGCGTGCACCCCTGCTCAGCAACTGCGCACCAGAATGCTCTGCCCAACAAA
AAAATCTTTCTCCATCTCTGAACAGCAGCCCTTTACAACTGCAAGAAAAATCTCTCTCCT
CCACGTGCCTTCCTTTTCCTACCCACTGCATTGACTCAAACCCTTTTCCACTTACCCTTT
TCCCATGGCCCAAG
■■Homology search results ■■ -
sp_hit_id P87236
Definition sp|P87236|MU154_SCHPO Meiotically up-regulated gene 154 protein OS=Schizosaccharomyces pombe
Align length 34
Score (bit) 30.8
E-value 4.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914472|Adiantum capillus-veneris mRNA, clone:
YMU001_000059_C09.
         (536 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P87236|MU154_SCHPO Meiotically up-regulated gene 154 protein ...    31   4.3  
sp|Q9TTD8|PROP1_CANFA Homeobox protein prophet of Pit-1 OS=Canis...    30   7.4  
sp|O75360|PROP1_HUMAN Homeobox protein prophet of Pit-1 OS=Homo ...    30   9.7  
sp|Q3LU38|PROP1_ALOBE Homeobox protein prophet of Pit-1 OS=Aloua...    30   9.7  

>sp|P87236|MU154_SCHPO Meiotically up-regulated gene 154 protein
           OS=Schizosaccharomyces pombe GN=mug154 PE=1 SV=1
          Length = 316

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +2

Query: 161 LSHRCASGRTLSVSPSVPIRLQQRALSHFPVSGI 262
           L HR +S   L+ +P  PI LQ+R++ H   SGI
Sbjct: 262 LEHRSSSHDHLTSTPRTPIALQRRSVHHLHDSGI 295


>sp|Q9TTD8|PROP1_CANFA Homeobox protein prophet of Pit-1 OS=Canis
           familiaris GN=PROP1 PE=3 SV=1
          Length = 226

 Score = 30.0 bits (66), Expect = 7.4
 Identities = 20/60 (33%), Positives = 25/60 (41%)
 Frame = +1

Query: 166 SQMRKRQNSLCQPFCSHSPATKSPVPFSSVGDSKXXXXXXXXXXXFKQPALHCLATQPST 345
           ++ RK++ SL QP    SPAT S     S                F  P  H L +QPST
Sbjct: 122 AKQRKQERSLLQPLAHLSPATFSGFLPESPACPYSYPTPPPPMTCFPHPYNHALPSQPST 181


>sp|O75360|PROP1_HUMAN Homeobox protein prophet of Pit-1 OS=Homo
           sapiens GN=PROP1 PE=1 SV=1
          Length = 226

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 19/60 (31%), Positives = 24/60 (40%)
 Frame = +1

Query: 166 SQMRKRQNSLCQPFCSHSPATKSPVPFSSVGDSKXXXXXXXXXXXFKQPALHCLATQPST 345
           ++ RK++ SL QP    SPA  S     S                F  P  H L +QPST
Sbjct: 122 AKQRKQERSLLQPLAHLSPAAFSSFLPESTACPYSYAAPPPPVTCFPHPYSHALPSQPST 181


>sp|Q3LU38|PROP1_ALOBE Homeobox protein prophet of Pit-1 OS=Alouatta
           belzebul GN=PROP1 PE=3 SV=1
          Length = 226

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 19/60 (31%), Positives = 24/60 (40%)
 Frame = +1

Query: 166 SQMRKRQNSLCQPFCSHSPATKSPVPFSSVGDSKXXXXXXXXXXXFKQPALHCLATQPST 345
           ++ RK++ SL QP    SPAT S     S                F  P  H   +QPST
Sbjct: 122 AKQRKQERSLLQPLAHLSPATFSGFLPESPAGPYSYTTPPPPVTCFPHPYSHAFPSQPST 181
tr_hit_id A4RTZ1
Definition tr|A4RTZ1|A4RTZ1_OSTLU Predicted protein OS=Ostreococcus lucimarinus (strain CCE9901)
Align length 53
Score (bit) 33.9
E-value 5.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914472|Adiantum capillus-veneris mRNA, clone:
YMU001_000059_C09.
         (536 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A4RTZ1|A4RTZ1_OSTLU Predicted protein OS=Ostreococcus lucimar...    34   5.5  
tr|B4QWJ8|B4QWJ8_DROSI GD18627 OS=Drosophila simulans GN=GD18627...    33   7.2  

>tr|A4RTZ1|A4RTZ1_OSTLU Predicted protein OS=Ostreococcus
           lucimarinus (strain CCE9901) GN=SDG3501 PE=4 SV=1
          Length = 1782

 Score = 33.9 bits (76), Expect = 5.5
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
 Frame = -2

Query: 484 VGKGRHVEERDFSCSCKGLLF------RDGERFFCWAEHSGAQLLSRGARDSL 344
           VG+      RDF+ +C  ++F      R  ER +CWA   G    +RG R  L
Sbjct: 69  VGRAPEAVRRDFAAACCCVMFYGPSGTRGRERDYCWAPAEGLMAWARGVRRGL 121


>tr|B4QWJ8|B4QWJ8_DROSI GD18627 OS=Drosophila simulans GN=GD18627
           PE=4 SV=1
          Length = 899

 Score = 33.5 bits (75), Expect = 7.2
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -2

Query: 217 NGNRRADRESSAACASVREREEENFNIVGREREQSHA*VHCSMGRR 80
           NG+R ADR   +  AS + R+E + + +    E+S+     S GRR
Sbjct: 309 NGHREADRSKGSESASTKSRQEHDLSDISLSDEESYLREKASNGRR 354