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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914475
Clone id YMU001_000059_C12
Library
Length 477
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000059_C12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TGTACATGCCCATCCATGAGACACCCAATATGATTGCCTCATTGAGATCAGTATCTGCCA
TTACATGGAACTAGTGTGGGTAGTGATGGCCATCTATGTCGATTAATAGATTGGCTTGAC
CTAAACTAACCATCGTCCCTTTGTTCGCTGCTTTGAGGTCTATCTGAAAAGGCATCAATT
GTACATCTGACATTTTTAGGTATGCCGAATACTTCATGGCATTGATTGGCACTTTAGTAT
CAACAAGTGCTTGCTCATTGGATCCATCTGCCAACTATATACGGATGCGTACATCCATAC
CTCTAAGGCAATTTGAATATGTCTGAATCACTTCGATAGGAGGTGATGTTGCAAGTTGTT
GAATTCGGATTGTGTTTTGTCATTATTTGCGCTTCAAAATTCACAAATTTTATTCCTCCT
GAGCTTGTGCTTGAATGGCTTGAGAACTTTTCTTCCATTCAGCTACTTTATGAATCT
■■Homology search results ■■ -
sp_hit_id O93574
Definition sp|O93574|RELN_CHICK Reelin (Fragment) OS=Gallus gallus
Align length 53
Score (bit) 30.8
E-value 3.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914475|Adiantum capillus-veneris mRNA, clone:
YMU001_000059_C12.
         (477 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O93574|RELN_CHICK Reelin (Fragment) OS=Gallus gallus GN=RELN ...    31   3.2  
sp|Q55638|HYPF_SYNY3 Carbamoyltransferase hypF OS=Synechocystis ...    31   3.2  
sp|Q9HXZ1|DPO3A_PSEAE DNA polymerase III subunit alpha OS=Pseudo...    30   4.2  
sp|Q55CV9|Y9880_DICDI CaiB/baiF CoA-transferase family protein D...    30   7.2  
sp|P01015|ANGT_RAT Angiotensinogen OS=Rattus norvegicus GN=Agt P...    30   7.2  

>sp|O93574|RELN_CHICK Reelin (Fragment) OS=Gallus gallus GN=RELN PE=2
            SV=1
          Length = 3209

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = +2

Query: 149  CFEVYLKRHQLYI*HF*VCRILHGIDWHFSINKCLLIGSICQLYTDAYIHTSK 307
            C + Y   H +++ +     + +G DWH    +C+     CQ YT++ I+TS+
Sbjct: 1421 CSKPYSNSHSIHLQY----SLNNGRDWHLVTEECVPPTIGCQHYTESSIYTSE 1469


>sp|Q55638|HYPF_SYNY3 Carbamoyltransferase hypF OS=Synechocystis sp.
           (strain PCC 6803) GN=hypF PE=3 SV=1
          Length = 767

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 88  HHYPH*FHVMADTDLNEAIILGVSWMG 8
           HHY H   VMA+  + E  +LG++W G
Sbjct: 482 HHYAHILAVMAEHGVMEESVLGIAWDG 508


>sp|Q9HXZ1|DPO3A_PSEAE DNA polymerase III subunit alpha OS=Pseudomonas
            aeruginosa GN=dnaE PE=3 SV=1
          Length = 1173

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = -3

Query: 166  QIDLKAANKGTMVSLGQANLLIDIDGHHYPH*FHVMADTDLNEAIIL 26
            ++DLK  NK T+ +L +A  L  +  H++       A  DLN A++L
Sbjct: 869  RVDLKRINKRTLEALIRAGALDRLGPHYHDELKAYQATVDLNRAVLL 915


>sp|Q55CV9|Y9880_DICDI CaiB/baiF CoA-transferase family protein
           DDB_G0269880 OS=Dictyostelium discoideum GN=DDB_G0269880
           PE=3 SV=1
          Length = 471

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -2

Query: 419 GGIKFVNFEAQIMTKHNPNSTTCNITSYRSDSDIFKLP 306
           GG+K  + + + + + NP+   C+IT +  D +  KLP
Sbjct: 130 GGLKKYSLDYETIKQINPSIIYCSITGFGQDGEYSKLP 167


>sp|P01015|ANGT_RAT Angiotensinogen OS=Rattus norvegicus GN=Agt PE=1
           SV=1
          Length = 477

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = +3

Query: 219 ALIGTLVSTSACSLDPSANYIRMRTSIPLRQ 311
           AL GTLVS    SLDP+A+ +++   +P+++
Sbjct: 128 ALFGTLVSFYLGSLDPTASQLQVLLGVPVKE 158
tr_hit_id B5SCN2
Definition tr|B5SCN2|B5SCN2_RALSO Hrp conserved protein hrcq OS=Ralstonia solanacearum
Align length 61
Score (bit) 39.3
E-value 0.099
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914475|Adiantum capillus-veneris mRNA, clone:
YMU001_000059_C12.
         (477 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B5SCN2|B5SCN2_RALSO Hrp conserved protein hrcq OS=Ralstonia s...    39   0.099
tr|A3RV38|A3RV38_RALSO HrcQ OS=Ralstonia solanacearum UW551 GN=h...    39   0.099
tr|B5S4Y9|B5S4Y9_RALSO Hrp conserved protein hrcq OS=Ralstonia s...    38   0.29 
tr|A8QI88|A8QI88_DROME CG40950 OS=Drosophila melanogaster GN=CG4...    35   1.9  
tr|A5CBG2|A5CBG2_VITVI Putative uncharacterized protein OS=Vitis...    34   4.2  
tr|A5B0U3|A5B0U3_VITVI Putative uncharacterized protein OS=Vitis...    34   4.2  
tr|B3H087|B3H087_ACTP7 Transferrin binding protein-like solute b...    33   9.2  
tr|B3EFD9|B3EFD9_CHLL2 Surface antigen msp4 family protein OS=Ch...    33   9.2  
tr|B0BSQ2|B0BSQ2_ACTPJ Transferrin-binding protein 2 OS=Actinoba...    33   9.2  
tr|A3MYW7|A3MYW7_ACTP2 Transferrin binding protein-like solute b...    33   9.2  

>tr|B5SCN2|B5SCN2_RALSO Hrp conserved protein hrcq OS=Ralstonia
           solanacearum GN=hrcQ PE=4 SV=1
          Length = 362

 Score = 39.3 bits (90), Expect = 0.099
 Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = -3

Query: 187 DVQLMPFQIDLKAANKGTM-VSLGQANLLIDIDGHHYPH*FHVMADTDLNEAIILGVSWM 11
           D QL P +  LKAA   T+ +   Q +  + IDG HYP    +  DTD    + LG  W+
Sbjct: 46  DWQLQPVRTPLKAAAPITLSIESAQCHAELIIDGSHYPALHAIALDTDRPRRLALGNLWL 105

Query: 10  G 8
           G
Sbjct: 106 G 106


>tr|A3RV38|A3RV38_RALSO HrcQ OS=Ralstonia solanacearum UW551 GN=hrcQ
           PE=4 SV=1
          Length = 355

 Score = 39.3 bits (90), Expect = 0.099
 Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = -3

Query: 187 DVQLMPFQIDLKAANKGTM-VSLGQANLLIDIDGHHYPH*FHVMADTDLNEAIILGVSWM 11
           D QL P +  LKAA   T+ +   Q +  + IDG HYP    +  DTD    + LG  W+
Sbjct: 39  DWQLQPVRTPLKAAAPITLSIESAQCHAELIIDGSHYPALHAIALDTDRPRRLALGNLWL 98

Query: 10  G 8
           G
Sbjct: 99  G 99


>tr|B5S4Y9|B5S4Y9_RALSO Hrp conserved protein hrcq OS=Ralstonia
           solanacearum GN=hrcQ PE=4 SV=1
          Length = 362

 Score = 37.7 bits (86), Expect = 0.29
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = -3

Query: 187 DVQLMPFQIDLKAANKGTM-VSLGQANLLIDIDGHHYPH*FHVMADTDLNEAIILGVSWM 11
           D QL P +  LKAA   T+ +   + +  + IDG HYP    +  DTD    + LG  W+
Sbjct: 46  DWQLQPVRTPLKAAAPITLSIESARCHAELIIDGSHYPALHAIALDTDRPRRLALGNLWL 105

Query: 10  G 8
           G
Sbjct: 106 G 106


>tr|A8QI88|A8QI88_DROME CG40950 OS=Drosophila melanogaster
           GN=CG40950 PE=4 SV=1
          Length = 245

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 21/79 (26%), Positives = 36/79 (45%)
 Frame = -3

Query: 253 QALVDTKVPINAMKYSAYLKMSDVQLMPFQIDLKAANKGTMVSLGQANLLIDIDGHHYPH 74
           Q LVDT   +  ++ S Y K+   +L      L       +++ G   + +++DG     
Sbjct: 54  QGLVDTGADLCLIRRSVYTKLGRNKLTGLAKCLTGKGNSQVLTFGSFVISVEVDGIDMQI 113

Query: 73  *FHVMADTDLNEAIILGVS 17
            FHV+ D D     ILG++
Sbjct: 114 KFHVLPDEDTGFDSILGIT 132


>tr|A5CBG2|A5CBG2_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_015348 PE=4 SV=1
          Length = 1297

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
 Frame = -3

Query: 256 EQALVDTKVPINAMKYSAYLKMSDVQLMPFQIDLKAANKGTMVSLG-QANLLIDIDGHHY 80
           E+AL+D    +N   YS Y ++   +L P  I L   ++   +  G   ++L+ +D  +Y
Sbjct: 396 EKALLDLGASVNLPPYSVYKQLGLGELKPTSITLSLVDRSVKIPRGIIEDVLVQVDHFYY 455

Query: 79  PH*FHVMADTD 47
           P  F V+ DT+
Sbjct: 456 PVDF-VILDTN 465


>tr|A5B0U3|A5B0U3_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_043798 PE=4 SV=1
          Length = 1697

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
 Frame = -3

Query: 256 EQALVDTKVPINAMKYSAYLKMSDVQLMPFQIDLKAANKGTMVSLG-QANLLIDIDGHHY 80
           E+AL+D    +N + Y  Y ++   +L P  I L  A++   +  G   ++L+ +D  ++
Sbjct: 779 EKALLDLGASVNLLPYYVYKQLGLGELKPTSIILSLADRSVKIPKGIIEDVLVQVDHFYH 838

Query: 79  PH*FHVMADTD 47
           P  F V+ DTD
Sbjct: 839 PVDF-VVLDTD 848


>tr|B3H087|B3H087_ACTP7 Transferrin binding protein-like solute
           binding protein OS=Actinobacillus pleuropneumoniae
           serotype 7 (strain AP76) GN=APP7_0247 PE=4 SV=1
          Length = 409

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 18/30 (60%), Positives = 20/30 (66%)
 Frame = -3

Query: 166 QIDLKAANKGTMVSLGQANLLIDIDGHHYP 77
           QIDLK   +  M S GQANLL+ IDGH  P
Sbjct: 196 QIDLKDFKQSEMDSFGQANLLV-IDGHIIP 224


>tr|B3EFD9|B3EFD9_CHLL2 Surface antigen msp4 family protein
           OS=Chlorobium limicola (strain DSM 245 / NBRC 103803)
           GN=Clim_0329 PE=3 SV=1
          Length = 222

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
 Frame = -3

Query: 208 SAYLKMSDVQLMP------FQIDLKAANKGTMVSLGQANLLIDIDGHHYPH*FHVMADTD 47
           S YL   DVQ++       + IDL   +   M  +G A + +DIDG  Y H +    DT+
Sbjct: 93  SDYLS-GDVQVLSLMANGFYDIDLGGVDLYAMAGVGVAQVNVDIDGERYSHRYQTWVDTN 151


>tr|B0BSQ2|B0BSQ2_ACTPJ Transferrin-binding protein 2
           OS=Actinobacillus pleuropneumoniae serotype 3 (strain
           JL03) GN=tbpB2 PE=4 SV=1
          Length = 569

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 18/30 (60%), Positives = 20/30 (66%)
 Frame = -3

Query: 166 QIDLKAANKGTMVSLGQANLLIDIDGHHYP 77
           QIDLK   +  M S GQANLL+ IDGH  P
Sbjct: 356 QIDLKDFKQSEMDSFGQANLLV-IDGHIIP 384


>tr|A3MYW7|A3MYW7_ACTP2 Transferrin binding protein-like solute
           binding protein OS=Actinobacillus pleuropneumoniae
           serotype 5b (strain L20) GN=APL_0245 PE=4 SV=1
          Length = 569

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 18/30 (60%), Positives = 20/30 (66%)
 Frame = -3

Query: 166 QIDLKAANKGTMVSLGQANLLIDIDGHHYP 77
           QIDLK   +  M S GQANLL+ IDGH  P
Sbjct: 356 QIDLKDFKQSEMDSFGQANLLV-IDGHIIP 384