BP914509
Clone id YMU001_000059_F11
Library
Length 533
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000059_F11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
TTTTTTTGTTTTTTATTTTTTTTACAAAGTAAACAAGCCTTTGCATGTATACTGTATACT
TAATTTTCCTCTTACAATAGGCAAAGGCTACATTGATCACCATCCTACGTTAGCTATGTC
AATAACAAGATAAACTTAATCATCAGAATTGCCACCACCTGGTTGTCAATGCTACGATCC
CGAACTTGCCTTATCGATGCTTTCAGTTACAATAATCTTCACACAGTTCTCGTCGTCATC
GACCCTTAGTGATCCTCCAGAGTAATTAACGTCAGAGTGCTTTCTTACTATCCTTTCGCT
TTTGTAGTATTGCTCAAAGAATTCTTGATTTGCCTTCTCCAATTCTTTCCAGACTGTCCG
GGTGACGATGGGATCGATTCCGGCATGCTGGAAGAGCGCTTTGACGCATTCTTCTTTGTC
TAGACAGAGAGTGAGGCACCGTTCTATGAGGTGCTGCACCTTCCTGATGAAAGATTGCGA
AGCCTCATCAATTACATTTTCTGTGCCTGTGCTCGAATTCGACGACGACGTCG
■■Homology search results ■■ -
sp_hit_id Q54NZ5
Definition sp|Q54NZ5|CUL3_DICDI Cullin-3 OS=Dictyostelium discoideum
Align length 73
Score (bit) 32.0
E-value 1.7
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914509|Adiantum capillus-veneris mRNA, clone:
YMU001_000059_F11.
(510 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q54NZ5|CUL3_DICDI Cullin-3 OS=Dictyostelium discoideum GN=cul... 32 1.7
sp|Q9M1B9|SCRK4_ARATH Probable fructokinase-4 OS=Arabidopsis tha... 32 2.3
sp|Q8F8N2|TRUD_LEPIN tRNA pseudouridine synthase D OS=Leptospira... 31 2.9
sp|Q72N01|TRUD_LEPIC tRNA pseudouridine synthase D OS=Leptospira... 31 2.9
sp|Q9SID0|SCRK1_ARATH Probable fructokinase-1 OS=Arabidopsis tha... 31 2.9
sp|Q17QP0|CM030_BOVIN Uncharacterized protein C13orf30 homolog O... 31 3.9
sp|A4GGA5|RPOB_PHAVU DNA-directed RNA polymerase subunit beta OS... 30 5.0
sp|Q84RR2|ARI2_ARATH Probable E3 ubiquitin-protein ligase ARI2 O... 30 5.0
sp|P03134|VNCS_MUMIV Non-capsid protein NS-1 OS=Murine minute vi... 30 6.6
sp|A7Y3B9|RPOB_IPOPU DNA-directed RNA polymerase subunit beta OS... 30 8.6
sp|A2TJ54|CLN5_SHEEP Ceroid-lipofuscinosis neuronal protein 5 OS... 30 8.6
sp|Q8J0I8|AOX_YARLI Alternative oxidase, mitochondrial OS=Yarrow... 30 8.6

>sp|Q54NZ5|CUL3_DICDI Cullin-3 OS=Dictyostelium discoideum GN=culC
PE=3 SV=1
Length = 769

Score = 32.0 bits (71), Expect = 1.7
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 11/73 (15%)
Frame = -3

Query: 352 DPIVTRTVWKELEKANQEF---------FEQYYKS--ERIVRKHSDVNYSGGSLRVDDDE 206
DP + WK L+ A ++ FE+ Y++ +++KH D+ Y+ VD
Sbjct: 22 DPDFPKRTWKLLKTAMRQIHQQNASNLSFEELYRNGYNMVLQKHGDLLYNNLKKMVDKHL 81

Query: 205 NCVKIIVTESIDK 167
V V+ESID+
Sbjct: 82 KAVAKTVSESIDE 94


>sp|Q9M1B9|SCRK4_ARATH Probable fructokinase-4 OS=Arabidopsis
thaliana GN=At3g59480 PE=2 SV=1
Length = 326

Score = 31.6 bits (70), Expect = 2.3
Identities = 21/89 (23%), Positives = 38/89 (42%)
Frame = -3

Query: 475 NVIDEASQSFIRKVQHLIERCLTLCLDKEECVKALFQHAGIDPIVTRTVWKELEKANQEF 296
+VI A + ++E C + L E K DP + +W E+A ++
Sbjct: 130 DVIRSAKVFHYGSISLIVEPCRSAHLKAMEVAKEAGALLSYDPNLRLPLWPSKEEAQKQI 189

Query: 295 FEQYYKSERIVRKHSDVNYSGGSLRVDDD 209
+ K+E I ++ + GS +VDD+
Sbjct: 190 LSIWDKAEVIKVSDEELMFLTGSDKVDDE 218


>sp|Q8F8N2|TRUD_LEPIN tRNA pseudouridine synthase D OS=Leptospira
interrogans GN=truD PE=3 SV=1
Length = 408

Score = 31.2 bits (69), Expect = 2.9
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = -3

Query: 334 TVWKELEKANQEFFEQYYKSERIVRKHSDVNYSGGSLRVDDDENCVKIIVTE 179
++ EK + F YY S+R R HS+ D E C+K+I+T+
Sbjct: 137 SIRNNFEKITKNGFINYYDSQRFSRFHSEFRLPILPFFKGDAETCLKLILTD 188


>sp|Q72N01|TRUD_LEPIC tRNA pseudouridine synthase D OS=Leptospira
interrogans serogroup Icterohaemorrhagiae serovar
copenhageni GN=truD PE=3 SV=2
Length = 408

Score = 31.2 bits (69), Expect = 2.9
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = -3

Query: 334 TVWKELEKANQEFFEQYYKSERIVRKHSDVNYSGGSLRVDDDENCVKIIVTE 179
++ EK + F YY S+R R HS+ D E C+K+I+T+
Sbjct: 137 SIRNNFEKITKNGFINYYDSQRFSRFHSEFRLPILPFFKGDAETCLKLILTD 188


>sp|Q9SID0|SCRK1_ARATH Probable fructokinase-1 OS=Arabidopsis
thaliana GN=At2g31390 PE=2 SV=1
Length = 325

Score = 31.2 bits (69), Expect = 2.9
Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 8/94 (8%)
Frame = -3

Query: 466 DEASQSFIR--KVQH------LIERCLTLCLDKEECVKALFQHAGIDPIVTRTVWKELEK 311
DE + IR KV H ++E C + L E K DP + +W E+
Sbjct: 124 DELNLDLIRSAKVFHYGSISLIVEPCRSAHLKAMEVAKEAGALLSYDPNLREPLWPSKEE 183

Query: 310 ANQEFFEQYYKSERIVRKHSDVNYSGGSLRVDDD 209
A + + K+E I ++ + GS ++DD+
Sbjct: 184 AKTQIMSIWDKAEIIKVSDVELEFLTGSNKIDDE 217


>sp|Q17QP0|CM030_BOVIN Uncharacterized protein C13orf30 homolog
OS=Bos taurus PE=2 SV=1
Length = 145

Score = 30.8 bits (68), Expect = 3.9
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Frame = -2

Query: 434 AAPHRTVPHSLSRQRRMRQSALPAC----RNRSHRHPDSLER 321
A PHRTVP + + R + SA P C R RS R P R
Sbjct: 99 AGPHRTVPQRAAGRTRTQPSARPVCVIPLRARSTRLPSLRSR 140


>sp|A4GGA5|RPOB_PHAVU DNA-directed RNA polymerase subunit beta
OS=Phaseolus vulgaris GN=rpoB PE=3 SV=1
Length = 1070

Score = 30.4 bits (67), Expect = 5.0
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = -3

Query: 370 FQHAGIDPIVTRTVWKELEKANQEFFEQYYKSERIVRKH 254
F G DP+ + ++WKEL+K +FF+Q + RI R++
Sbjct: 230 FACVGGDPVFSESLWKELQK---KFFQQRCELGRIGRRN 265


>sp|Q84RR2|ARI2_ARATH Probable E3 ubiquitin-protein ligase ARI2
OS=Arabidopsis thaliana GN=ARI2 PE=2 SV=1
Length = 593

Score = 30.4 bits (67), Expect = 5.0
Identities = 19/81 (23%), Positives = 40/81 (49%)
Frame = -3

Query: 442 RKVQHLIERCLTLCLDKEECVKALFQHAGIDPIVTRTVWKELEKANQEFFEQYYKSERIV 263
+++ + +C +C E+ V+AL V+++ EK ++ E Y + ++V
Sbjct: 164 KRIICMAHKCNAIC--DEDVVRAL---------VSKSQPDLAEKFDRFLLESYIEDNKMV 212

Query: 262 RKHSDVNYSGGSLRVDDDENC 200
+ + G ++RV+DDE C
Sbjct: 213 KWCPSTPHCGNAIRVEDDELC 233


>sp|P03134|VNCS_MUMIV Non-capsid protein NS-1 OS=Murine minute virus
GN=NS1 PE=1 SV=1
Length = 672

Score = 30.0 bits (66), Expect = 6.6
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = -3

Query: 352 DPIVTRTVWKELEKANQEFFEQYYKSERIVRKHSDVNYSGGSLRVDDDE 206
D ++ T W + EK+NQE F +K+E + D+ ++ + +DE
Sbjct: 8 DEVLGATNWLK-EKSNQEVFSFVFKNENVQLNGKDIGWNSYKKELQEDE 55


>sp|A7Y3B9|RPOB_IPOPU DNA-directed RNA polymerase subunit beta
OS=Ipomoea purpurea GN=rpoB PE=3 SV=1
Length = 1067

Score = 29.6 bits (65), Expect = 8.6
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = -3

Query: 394 KEECVKALFQHAGI---DPIVTRTVWKELEKANQEFFEQYYKSERIVRKH 254
KE + +Q DPI + ++WKEL+K +FF+Q + RI R++
Sbjct: 216 KENAILEFYQQFACVDGDPIFSESLWKELQK---KFFQQRCELGRIGRRN 262


tr_hit_id Q6L4Z7
Definition tr|Q6L4Z7|Q6L4Z7_ORYSJ Os05g0462000 protein OS=Oryza sativa subsp. japonica
Align length 97
Score (bit) 90.9
E-value 3.0e-17
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914509|Adiantum capillus-veneris mRNA, clone:
YMU001_000059_F11.
(510 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q6L4Z7|Q6L4Z7_ORYSJ Os05g0462000 protein OS=Oryza sativa subs... 91 3e-17
tr|A2Y5H2|A2Y5H2_ORYSI Putative uncharacterized protein OS=Oryza... 91 3e-17
tr|Q9M3C7|Q9M3C7_ARATH Putative uncharacterized protein T26I12.1... 83 9e-15
tr|A7QMT8|A7QMT8_VITVI Chromosome chr14 scaffold_128, whole geno... 82 2e-14
tr|B7FMI5|B7FMI5_MEDTR Putative uncharacterized protein OS=Medic... 80 4e-14
tr|A7Q443|A7Q443_VITVI Chromosome chr13 scaffold_48, whole genom... 80 4e-14
tr|A7PSX4|A7PSX4_VITVI Chromosome chr8 scaffold_29, whole genome... 80 4e-14
tr|Q943N1|Q943N1_ORYSJ Putative uncharacterized protein P0031D11... 80 6e-14
tr|B4FK74|B4FK74_MAIZE Putative uncharacterized protein OS=Zea m... 80 6e-14
tr|A2WWS7|A2WWS7_ORYSI Putative uncharacterized protein OS=Oryza... 80 6e-14
tr|B4FFL2|B4FFL2_MAIZE Plant-specific domain TIGR01589 family pr... 78 3e-13
tr|Q84TG0|Q84TG0_ARATH At5g02580 (Putative uncharacterized prote... 77 5e-13
tr|Q10N71|Q10N71_ORYSJ Os03g0280400 protein OS=Oryza sativa subs... 77 5e-13
tr|A2XF84|A2XF84_ORYSI Putative uncharacterized protein OS=Oryza... 77 5e-13
tr|B6TV67|B6TV67_MAIZE Plant-specific domain TIGR01589 family pr... 76 8e-13
tr|Q9MBG6|Q9MBG6_ARATH Emb|CAB75758.1 OS=Arabidopsis thaliana GN... 75 1e-12
tr|Q8LE39|Q8LE39_ARATH Putative uncharacterized protein OS=Arabi... 75 1e-12
tr|B7FN40|B7FN40_MEDTR Putative uncharacterized protein OS=Medic... 75 1e-12
tr|A9NLY7|A9NLY7_PICSI Putative uncharacterized protein OS=Picea... 75 2e-12
tr|Q1G3V6|Q1G3V6_ARATH Putative uncharacterized protein OS=Arabi... 74 5e-12
tr|B3H6Q0|B3H6Q0_ARATH Uncharacterized protein At1g10657.3 OS=Ar... 74 5e-12
tr|A0MDL6|A0MDL6_ARATH Putative uncharacterized protein (Fragmen... 74 5e-12
tr|A9P1K2|A9P1K2_PICSI Putative uncharacterized protein OS=Picea... 72 2e-11
tr|B3H715|B3H715_ARATH Uncharacterized protein At1g10657.4 OS=Ar... 71 3e-11
tr|Q9FYF1|Q9FYF1_ARATH Putative uncharacterized protein F21E1_10... 66 1e-09
tr|Q66GM7|Q66GM7_ARATH At5g04090 (Uncharacterized protein At5g04... 64 6e-09
tr|B6UIP7|B6UIP7_MAIZE Putative uncharacterized protein OS=Zea m... 63 7e-09
tr|B4FQR8|B4FQR8_MAIZE Plant-specific domain TIGR01589 family pr... 63 7e-09
tr|Q9SS36|Q9SS36_ARATH F14P13.15 protein OS=Arabidopsis thaliana... 62 2e-08
tr|Q940M5|Q940M5_ARATH AT3g10250/F14P13_15 (Putative uncharacter... 62 2e-08

>tr|Q6L4Z7|Q6L4Z7_ORYSJ Os05g0462000 protein OS=Oryza sativa subsp.
japonica GN=OJ1281_H05.17 PE=4 SV=1
Length = 102

Score = 90.9 bits (224), Expect = 3e-17
Identities = 49/97 (50%), Positives = 63/97 (64%), Gaps = 11/97 (11%)
Frame = -3

Query: 460 ASQSFIRKVQHLIERCLTLCLDKEECVKALFQHAGIDPIVTRTVWKELEKANQEFFEQYY 281
+S S+IR V HLIE+C+ L+KEEC++AL +HA I+P+VT TVWKELEK N+EFFE Y
Sbjct: 6 SSASYIRMVHHLIEKCICFNLNKEECMEALEKHANINPVVTSTVWKELEKENKEFFETYN 65

Query: 280 KS-----------ERIVRKHSDVNYSGGSLRVDDDEN 203
K +RI + SD S GS DDDE+
Sbjct: 66 KDRAERNIEAETMQRIQKMLSDAAASKGSDDDDDDES 102


>tr|A2Y5H2|A2Y5H2_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_20242 PE=4 SV=1
Length = 102

Score = 90.9 bits (224), Expect = 3e-17
Identities = 49/97 (50%), Positives = 63/97 (64%), Gaps = 11/97 (11%)
Frame = -3

Query: 460 ASQSFIRKVQHLIERCLTLCLDKEECVKALFQHAGIDPIVTRTVWKELEKANQEFFEQYY 281
+S S+IR V HLIE+C+ L+KEEC++AL +HA I+P+VT TVWKELEK N+EFFE Y
Sbjct: 6 SSASYIRMVHHLIEKCICFNLNKEECMEALEKHANINPVVTSTVWKELEKENREFFETYN 65

Query: 280 KS-----------ERIVRKHSDVNYSGGSLRVDDDEN 203
K +RI + SD S GS DDDE+
Sbjct: 66 KDRAERNIEAETMQRIQKMLSDAAASKGSDDDDDDES 102


>tr|Q9M3C7|Q9M3C7_ARATH Putative uncharacterized protein T26I12.120
(Putative uncharacterized protein At3g55240)
OS=Arabidopsis thaliana GN=T26I12.120 PE=4 SV=1
Length = 95

Score = 82.8 bits (203), Expect = 9e-15
Identities = 36/61 (59%), Positives = 47/61 (77%)
Frame = -3

Query: 466 DEASQSFIRKVQHLIERCLTLCLDKEECVKALFQHAGIDPIVTRTVWKELEKANQEFFEQ 287
D +S S+I VQH+IE+CL + KEECV+AL +HA I P++T TVWKELEK N+EFF+
Sbjct: 3 DSSSASYIHMVQHMIEKCLIFHMSKEECVEALSKHANITPVITSTVWKELEKENKEFFKA 62

Query: 286 Y 284
Y
Sbjct: 63 Y 63


>tr|A7QMT8|A7QMT8_VITVI Chromosome chr14 scaffold_128, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00002210001
PE=4 SV=1
Length = 99

Score = 81.6 bits (200), Expect = 2e-14
Identities = 36/64 (56%), Positives = 47/64 (73%)
Frame = -3

Query: 460 ASQSFIRKVQHLIERCLTLCLDKEECVKALFQHAGIDPIVTRTVWKELEKANQEFFEQYY 281
+S S+I VQHLIE+CL + KE+C++AL +HA I P++T TVW ELEK N+EFFE YY
Sbjct: 7 SSASYIHMVQHLIEKCLIFHMTKEQCMEALSKHADIQPVITSTVWNELEKENKEFFEVYY 66

Query: 280 KSER 269
R
Sbjct: 67 TQTR 70


>tr|B7FMI5|B7FMI5_MEDTR Putative uncharacterized protein OS=Medicago
truncatula PE=4 SV=1
Length = 101

Score = 80.5 bits (197), Expect = 4e-14
Identities = 36/59 (61%), Positives = 46/59 (77%)
Frame = -3

Query: 460 ASQSFIRKVQHLIERCLTLCLDKEECVKALFQHAGIDPIVTRTVWKELEKANQEFFEQY 284
+S S+I VQHLIE+CL + KEEC++AL +HA I+PI+T TVW ELEK N+EFFE Y
Sbjct: 6 SSASYIHLVQHLIEKCLIFHMTKEECMEALSKHANINPIITSTVWNELEKVNKEFFEPY 64


>tr|A7Q443|A7Q443_VITVI Chromosome chr13 scaffold_48, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00029529001
PE=4 SV=1
Length = 110

Score = 80.5 bits (197), Expect = 4e-14
Identities = 35/60 (58%), Positives = 46/60 (76%)
Frame = -3

Query: 463 EASQSFIRKVQHLIERCLTLCLDKEECVKALFQHAGIDPIVTRTVWKELEKANQEFFEQY 284
++S S+I VQHLIE CL + KEEC++AL +HA I+P++T TVW ELEK N+EFFE Y
Sbjct: 3 DSSASYIHMVQHLIENCLIFHMSKEECMEALSKHANIEPVITSTVWNELEKENKEFFEGY 62


>tr|A7PSX4|A7PSX4_VITVI Chromosome chr8 scaffold_29, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00023118001
PE=4 SV=1
Length = 94

Score = 80.5 bits (197), Expect = 4e-14
Identities = 36/63 (57%), Positives = 47/63 (74%)
Frame = -3

Query: 463 EASQSFIRKVQHLIERCLTLCLDKEECVKALFQHAGIDPIVTRTVWKELEKANQEFFEQY 284
E+S S+I VQ LIE C+ + +EEC++AL +HA I P++T TVWKELEK N+EFFE Y
Sbjct: 3 ESSASYIHMVQRLIEECIIFNMSREECMEALSKHADIKPVITSTVWKELEKENKEFFESY 62

Query: 283 YKS 275
KS
Sbjct: 63 AKS 65


>tr|Q943N1|Q943N1_ORYSJ Putative uncharacterized protein P0031D11.1
(Putative uncharacterized protein) (Os01g0837600
protein) OS=Oryza sativa subsp. japonica GN=P0031D11.1
PE=4 SV=1
Length = 102

Score = 80.1 bits (196), Expect = 6e-14
Identities = 35/65 (53%), Positives = 47/65 (72%)
Frame = -3

Query: 466 DEASQSFIRKVQHLIERCLTLCLDKEECVKALFQHAGIDPIVTRTVWKELEKANQEFFEQ 287
D + S+IR VQHLIE+C+ ++KEEC++ L +HA I P++T TVWKELEK N EFF
Sbjct: 11 DSSPASYIRLVQHLIEKCICYNMNKEECMETLEKHANIKPVITSTVWKELEKENSEFFAT 70

Query: 286 YYKSE 272
Y K +
Sbjct: 71 YKKGQ 75


>tr|B4FK74|B4FK74_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 191

Score = 80.1 bits (196), Expect = 6e-14
Identities = 40/67 (59%), Positives = 50/67 (74%), Gaps = 4/67 (5%)
Frame = -3

Query: 466 DEASQS----FIRKVQHLIERCLTLCLDKEECVKALFQHAGIDPIVTRTVWKELEKANQE 299
D+AS S +IR VQHLIE+C+ L+KEEC++ L +HA I P+VT TVWKELEK N+E
Sbjct: 3 DDASSSPAASYIRLVQHLIEKCICYKLNKEECMETLEKHAKIMPVVTSTVWKELEKENRE 62

Query: 298 FFEQYYK 278
FFE Y K
Sbjct: 63 FFETYKK 69


>tr|A2WWS7|A2WWS7_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_04355 PE=4 SV=1
Length = 102

Score = 80.1 bits (196), Expect = 6e-14
Identities = 35/65 (53%), Positives = 47/65 (72%)
Frame = -3

Query: 466 DEASQSFIRKVQHLIERCLTLCLDKEECVKALFQHAGIDPIVTRTVWKELEKANQEFFEQ 287
D + S+IR VQHLIE+C+ ++KEEC++ L +HA I P++T TVWKELEK N EFF
Sbjct: 11 DSSPASYIRLVQHLIEKCICYNMNKEECMETLEKHANIKPVITSTVWKELEKENSEFFAT 70

Query: 286 YYKSE 272
Y K +
Sbjct: 71 YKKGQ 75