BP914519 |
Clone id |
YMU001_000059_G09 |
Library |
YMU01 |
Length |
579 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000059_G09. |
Accession |
BP914519 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
ATCCCAAATGATAATCAATACAATTGGATGTCTGGGTTAAAAACCCTCAAGGATAAACAT AAAGCTGTGAGGGAAAAGTACCCAGAAGGTAATACAAAAAGATGATAAGGGAAAAGGAAC TAGGAGAACTAGCTGTCAACCTTGCTGACTGCACAGATTTGCTAGGTCTCTCCTAGCGAT GCAGCCCCAGAAGCACCCACAACCCCTCAGCGCTCAGAATCCTCTACACACCTGCCTGTA CCACCAATCAAATCTCCCAAGGAACTCTGAAACCATGATGCTGGCCCTCCAGGATGTCCT TGAACCAATCTGTAATCAATCTGGATCTAATGCCGAGGAAGGTAGAAGTGGCCCTGGCAT CCCATCTCTGAAAGGAAGGAGGAAGAACTGTAGAGTCCTCCACCACGGAGACCATAAGAA TACACCAGAAGGAACCTGACTCTGACCAATACAACTGACCAATGGAACTGTCGAACTAAT GAGAAAGTAGGCTGTTGGCCAGAATGCCAATGTAGTTCTCTGCCAGGAGAGAAACCTGTT CAAAGAACCTGTCATAGACTGTCACTAAGTCCCACTCTC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q62245 |
Definition |
sp|Q62245|SOS1_MOUSE Son of sevenless homolog 1 OS=Mus musculus |
Align length |
44 |
Score (bit) |
33.5 |
E-value |
0.79 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q0HYY9 |
Definition |
tr|Q0HYY9|Q0HYY9_SHESR Sensor protein OS=Shewanella sp. (strain MR-7) |
Align length |
64 |
Score (bit) |
42.0 |
E-value |
0.024 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP914519|Adiantum capillus-veneris mRNA, clone: YMU001_000059_G09. (579 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q0HYY9|Q0HYY9_SHESR Sensor protein OS=Shewanella sp. (strain ... 42 0.024 tr|Q0HF16|Q0HF16_SHESM Sensor protein OS=Shewanella sp. (strain ... 42 0.024 tr|A0L0W4|A0L0W4_SHESA Sensor protein OS=Shewanella sp. (strain ... 42 0.024 tr|A1S2X7|A1S2X7_SHEAM Sensor protein OS=Shewanella amazonensis ... 38 0.35 tr|B6VFK8|B6VFK8_BOMOR Pumilio (Fragment) OS=Bombina orientalis ... 37 1.0 tr|Q07YA9|Q07YA9_SHEFN Sensor protein OS=Shewanella frigidimarin... 35 3.0 tr|Q6NVE5|Q6NVE5_MOUSE cDNA sequence BC068157 OS=Mus musculus GN... 34 6.8 tr|Q0GFY0|Q0GFY0_9HIV1 Envelope glycoprotein (Fragment) OS=Human... 33 8.7 tr|Q8YND7|Q8YND7_ANASP Alr4629 protein OS=Anabaena sp. (strain P... 33 8.7 tr|Q2M4G6|Q2M4G6_MOUSE Son of sevenless like-protein 1 (Fragment... 33 8.8 tr|B2ASN7|B2ASN7_PODAN Predicted CDS Pa_1_24120 OS=Podospora ans... 33 8.8
>tr|Q0HYY9|Q0HYY9_SHESR Sensor protein OS=Shewanella sp. (strain MR-7) GN=Shewmr7_0663 PE=4 SV=1 Length = 1172
Score = 42.0 bits (97), Expect = 0.024 Identities = 25/64 (39%), Positives = 41/64 (64%), Gaps = 3/64 (4%) Frame = -3
Query: 556 YDRFFEQVSLLAENYIGILANSLLSH*FDSSIGQLYW---SESGSFWCILMVSVVEDSTV 386 ++R+ +Q + LA IG+L+ LLS F +++G LYW + G+FW +LM S+V T+ Sbjct: 399 FERYIDQQNHLAS--IGLLSFVLLSQFFPAAVGALYWRRATTQGAFWGMLMGSLVWLYTL 456
Query: 385 LPPS 374 L P+ Sbjct: 457 LLPA 460
>tr|Q0HF16|Q0HF16_SHESM Sensor protein OS=Shewanella sp. (strain MR-4) GN=Shewmr4_3284 PE=4 SV=1 Length = 1168
Score = 42.0 bits (97), Expect = 0.024 Identities = 25/64 (39%), Positives = 41/64 (64%), Gaps = 3/64 (4%) Frame = -3
Query: 556 YDRFFEQVSLLAENYIGILANSLLSH*FDSSIGQLYW---SESGSFWCILMVSVVEDSTV 386 ++R+ +Q + LA IG+L+ LLS F +++G LYW + G+FW +LM S+V T+ Sbjct: 395 FERYIDQQNHLAS--IGLLSFVLLSQFFPAAVGALYWRRATTQGAFWGMLMGSLVWLYTL 452
Query: 385 LPPS 374 L P+ Sbjct: 453 LLPA 456
>tr|A0L0W4|A0L0W4_SHESA Sensor protein OS=Shewanella sp. (strain ANA-3) GN=Shewana3_3460 PE=4 SV=1 Length = 1175
Score = 42.0 bits (97), Expect = 0.024 Identities = 25/64 (39%), Positives = 41/64 (64%), Gaps = 3/64 (4%) Frame = -3
Query: 556 YDRFFEQVSLLAENYIGILANSLLSH*FDSSIGQLYW---SESGSFWCILMVSVVEDSTV 386 ++R+ +Q + LA IG+L+ LLS F +++G LYW + G+FW +LM S+V T+ Sbjct: 399 FERYIDQQNHLAS--IGLLSFVLLSQFFPAAVGALYWRRATTQGAFWGMLMGSLVWLYTL 456
Query: 385 LPPS 374 L P+ Sbjct: 457 LLPA 460
>tr|A1S2X7|A1S2X7_SHEAM Sensor protein OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=Sama_0523 PE=4 SV=1 Length = 1179
Score = 38.1 bits (87), Expect = 0.35 Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 3/64 (4%) Frame = -3
Query: 556 YDRFFEQVSLLAENYIGILANSLLSH*FDSSIGQLYW---SESGSFWCILMVSVVEDSTV 386 ++R+ +Q + LA IG+L+ LLS ++IG LYW + G+FW +L+ S+V T+ Sbjct: 407 FERYIDQQNHLAS--IGLLSFVLLSQFAPAAIGALYWRRANTQGAFWGMLLGSLVWLYTL 464
Query: 385 LPPS 374 L P+ Sbjct: 465 LLPA 468
>tr|B6VFK8|B6VFK8_BOMOR Pumilio (Fragment) OS=Bombina orientalis PE=2 SV=1 Length = 220
Score = 36.6 bits (83), Expect = 1.0 Identities = 24/71 (33%), Positives = 32/71 (45%) Frame = +2
Query: 164 RSLLAMQPQKHPQPLSAQNPLHTCLYHQSNLPRNSETMMLALQDVLEPICNQSGSNAEEG 343 R L + QPQ PQP QN + Y S+L NS++ L Q +P N G + G Sbjct: 124 RQLSSQQPQGQPQPQGNQNMASSSFYGNSSLSSNSQSSSLFSQSSGQPANNSLGFGS-SG 182
Query: 344 RSGPGIPSLKG 376 G + S G Sbjct: 183 SLGATLSSALG 193
>tr|Q07YA9|Q07YA9_SHEFN Sensor protein OS=Shewanella frigidimarina (strain NCIMB 400) GN=Sfri_3169 PE=3 SV=1 Length = 1168
Score = 35.0 bits (79), Expect = 3.0 Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 3/64 (4%) Frame = -3
Query: 556 YDRFFEQVSLLAENYIGILANSLLSH*FDSSIGQLYW---SESGSFWCILMVSVVEDSTV 386 ++RF +Q + LA IG+L+ LLS +++G LYW + G+F ++M S+V T+ Sbjct: 395 FERFIDQQNHLAS--IGLLSFVLLSQFAPAAVGALYWRNATTQGAFVGLIMGSIVWLYTL 452
Query: 385 LPPS 374 L P+ Sbjct: 453 LLPA 456
>tr|Q6NVE5|Q6NVE5_MOUSE cDNA sequence BC068157 OS=Mus musculus GN=BC068157 PE=1 SV=1 Length = 1067
Score = 33.9 bits (76), Expect = 6.8 Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 8/47 (17%) Frame = +1
Query: 184 APEAPTTPQRSESSTHLPVPPI--------KSPKEL*NHDAGPPGCP 300 AP P P RS SST L P + +P+EL +D+GP GCP Sbjct: 818 APAPPPPPSRSPSST-LSGPDLAGHSSSATSTPEELRGYDSGPEGCP 863
>tr|Q0GFY0|Q0GFY0_9HIV1 Envelope glycoprotein (Fragment) OS=Human immunodeficiency virus 1 GN=env PE=4 SV=1 Length = 87
Score = 33.5 bits (75), Expect = 8.7 Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 1/45 (2%) Frame = +2
Query: 236 LYHQSNLPRNSETMMLALQDVLEPICNQSGSNAEEG-RSGPGIPS 367 + SN+ NS+T+++ L + +E +C + G+N + R GPG PS Sbjct: 12 IIRSSNMTANSKTIIVHLHEDVEIVCARPGNNTTKNVRIGPGQPS 56
>tr|Q8YND7|Q8YND7_ANASP Alr4629 protein OS=Anabaena sp. (strain PCC 7120) GN=alr4629 PE=4 SV=1 Length = 315
Score = 33.5 bits (75), Expect = 8.7 Identities = 19/47 (40%), Positives = 23/47 (48%) Frame = +2
Query: 236 LYHQSNLPRNSETMMLALQDVLEPICNQSGSNAEEGRSGPGIPSLKG 376 L + N RNSE LAL VL P+ Q EG S G+P + G Sbjct: 258 LQFRKNSSRNSEITALALTQVLPPLLQQQSIAVPEGSSIIGLPLVMG 304
>tr|Q2M4G6|Q2M4G6_MOUSE Son of sevenless like-protein 1 (Fragment) OS=Mus musculus GN=Sos1 PE=2 SV=1 Length = 1174
Score = 33.5 bits (75), Expect = 8.8 Identities = 18/44 (40%), Positives = 22/44 (50%) Frame = +1
Query: 169 SPSDAAPEAPTTPQRSESSTHLPVPPIKSPKEL*NHDAGPPGCP 300 SPS P P TP + HLP PP+ +L + AGPP P Sbjct: 1093 SPSPFTPPPPQTPSPHGTRRHLPSPPLTQEMDL-HSIAGPPVPP 1135
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