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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914521
Clone id YMU001_000059_G11
Library
Length 554
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000059_G11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTACAAACCAAAGCCGCAAACCCCAAAAGGGTACGCATACACATGCTCAAAAAGCAATAC
CTAACTCGCAATGTGAAAGAAAAAACCAGTGCCGTAGATACACGCAGTGCATCAGAAGTT
GCCATTAATACATACCGTCAAATGTATGAGGAAAATTTTGATAACAACAAGTGAATCACA
ACCCATCACACAGTTCGGACGGTAGTCCATATTAATGCCATAAATCACTTGAGATTGAGT
CGAAGCAGCCAACTCCACAATAGCCTGCTTATCCTTGCCCTTTGCCATAGAGCCAACACT
TAACACTACACCCTTTGCAGGTAAACCCTCACAGTTCCAATGTACAGACACCTACTCAGA
AGTACATACACACACCACATATGCACATAGTCCCAATGCTAAGTGAGCATGGAAAGCTCA
CCGTTTTATAGGCTTCAGAGCCAGTGCACACCTTCCTTCACAGCAGTACAGCGGGTCCGG
CTTCAAGAGGGGGAAGATAGTAGCACCACCTTGTACAATGAGTACGGTCGGCCGCCTTTG
GCAACCTCTCTCTC
■■Homology search results ■■ -
sp_hit_id P57967
Definition sp|P57967|COAA_PASMU Pantothenate kinase OS=Pasteurella multocida
Align length 49
Score (bit) 32.7
E-value 1.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914521|Adiantum capillus-veneris mRNA, clone:
YMU001_000059_G11.
         (554 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P57967|COAA_PASMU Pantothenate kinase OS=Pasteurella multocid...    33   1.2  
sp|Q3SF38|OXAA_THIDA Inner membrane protein oxaA OS=Thiobacillus...    32   1.6  
sp|Q60441|MPU1_CRIGR Mannose-P-dolichol utilization defect 1 pro...    31   4.6  
sp|Q8SUH6|ZA15_ENCCU Zinc finger C2H2 protein ECU10_0150 OS=Ence...    30   7.9  
sp|P38898|YH17_YEAST Putative uncharacterized protein YHR217C OS...    30   7.9  
sp|Q6FP10|MED16_CANGA Mediator of RNA polymerase II transcriptio...    30   7.9  
sp|Q6JEL3|KLH10_RAT Kelch-like protein 10 OS=Rattus norvegicus G...    30   7.9  
sp|Q9D5V2|KLH10_MOUSE Kelch-like protein 10 OS=Mus musculus GN=K...    30   7.9  
sp|Q6JEL2|KLH10_HUMAN Kelch-like protein 10 OS=Homo sapiens GN=K...    30   7.9  

>sp|P57967|COAA_PASMU Pantothenate kinase OS=Pasteurella multocida
           GN=coaA PE=3 SV=1
          Length = 316

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +2

Query: 407 AWKAHRFIGFRASAHLPSQQYSGSGFKRGKIVAPPCTMSTVGRLWQPLS 553
           AW   RF+ FR SA      Y    FK    ++ P  +ST GR+W  ++
Sbjct: 238 AWYISRFLKFRQSAFSDPNSY----FKHYATLSEPEAISTAGRIWDEIN 282


>sp|Q3SF38|OXAA_THIDA Inner membrane protein oxaA OS=Thiobacillus
           denitrificans (strain ATCC 25259) GN=oxaA PE=3 SV=1
          Length = 546

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = -3

Query: 330 EGLPAKGVVLSVGSMAKGKDKQAIVELAASTQSQVI 223
           EGL + GV+L+ G +A G+ K   V L A  QSQ +
Sbjct: 282 EGLYSAGVILAEGQLAPGQQKTFTVPLYAGPQSQAV 317


>sp|Q60441|MPU1_CRIGR Mannose-P-dolichol utilization defect 1
           protein OS=Cricetulus griseus GN=MPDU1 PE=2 SV=2
          Length = 247

 Score = 30.8 bits (68), Expect = 4.6
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = -1

Query: 398 HWDYVHMWCVYVLLSRCLYIGTV 330
           HWD++H+ C+ +LLS+ L +G V
Sbjct: 29  HWDFLHVPCLKILLSKGLGLGIV 51


>sp|Q8SUH6|ZA15_ENCCU Zinc finger C2H2 protein ECU10_0150
           OS=Encephalitozoon cuniculi GN=ECU10_0150 PE=4 SV=1
          Length = 388

 Score = 30.0 bits (66), Expect = 7.9
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +1

Query: 1   LQTKAANPKRVRIHMLKKQYLTRNVKEKTSAVDTRSASEVAINTYRQMYEENFDNN 168
           + TK +   ++ I  L KQ      KE    + T+S  +  +N YR+   E FD N
Sbjct: 1   MDTKGSLADKIDIFFLLKQQKLITKKELGMLLPTQSYEDYRVNYYRRRVPEVFDRN 56


>sp|P38898|YH17_YEAST Putative uncharacterized protein YHR217C
           OS=Saccharomyces cerevisiae GN=YHR217C PE=5 SV=1
          Length = 153

 Score = 30.0 bits (66), Expect = 7.9
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +3

Query: 303 TLHPLQVNPHSSNVQTPTQKYIHTPH 380
           T HP    PH     TPT  + HTPH
Sbjct: 44  TPHPHPHTPHPHTTPTPTPHHTHTPH 69


>sp|Q6FP10|MED16_CANGA Mediator of RNA polymerase II transcription
           subunit 16 OS=Candida glabrata GN=SIN4 PE=3 SV=1
          Length = 973

 Score = 30.0 bits (66), Expect = 7.9
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +3

Query: 351 PTQKYIHTPHMHIVPMLSEHGK-LTVL*ASEPVHTFLHSSTAGPASRG 491
           P Q+Y+  P +H VP+ +E G  +     S    + +H +T+ P S G
Sbjct: 46  PPQRYVIHPQLHEVPLKTETGNGINGASGSSTAQSNIHGTTSVPGSAG 93


>sp|Q6JEL3|KLH10_RAT Kelch-like protein 10 OS=Rattus norvegicus
           GN=Klhl10 PE=2 SV=1
          Length = 608

 Score = 30.0 bits (66), Expect = 7.9
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +1

Query: 28  RVRIHMLKKQYLTRNVKEKTSAVDTRSASEVAINTYRQMYEENFD 162
           +VR+ ++  +Y   NVK      D+     V IN  + MY+ N +
Sbjct: 228 KVRLALMHAEYFMNNVKMNDYVKDSEECKPVIINALKAMYDLNMN 272


>sp|Q9D5V2|KLH10_MOUSE Kelch-like protein 10 OS=Mus musculus
           GN=Klhl10 PE=2 SV=1
          Length = 608

 Score = 30.0 bits (66), Expect = 7.9
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +1

Query: 28  RVRIHMLKKQYLTRNVKEKTSAVDTRSASEVAINTYRQMYEENFD 162
           +VR+ ++  +Y   NVK      D+     V IN  + MY+ N +
Sbjct: 228 KVRLALMHAEYFMNNVKMNDYVKDSEECKPVIINALKAMYDLNMN 272


>sp|Q6JEL2|KLH10_HUMAN Kelch-like protein 10 OS=Homo sapiens
           GN=KLHL10 PE=2 SV=1
          Length = 608

 Score = 30.0 bits (66), Expect = 7.9
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +1

Query: 28  RVRIHMLKKQYLTRNVKEKTSAVDTRSASEVAINTYRQMYEENFD 162
           +VR+ ++  +Y   NVK      D+     V IN  + MY+ N +
Sbjct: 228 KVRLALMHAEYFMNNVKMNDYVKDSEECKPVIINALKAMYDLNMN 272
tr_hit_id A8GZ23
Definition tr|A8GZ23|A8GZ23_SHEPA Penicillin-binding protein, 1A family OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1)
Align length 40
Score (bit) 33.5
E-value 7.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914521|Adiantum capillus-veneris mRNA, clone:
YMU001_000059_G11.
         (554 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8GZ23|A8GZ23_SHEPA Penicillin-binding protein, 1A family OS=...    33   7.8  

>tr|A8GZ23|A8GZ23_SHEPA Penicillin-binding protein, 1A family
           OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1)
           GN=Spea_0232 PE=4 SV=1
          Length = 849

 Score = 33.5 bits (75), Expect = 7.8
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = +2

Query: 233 D*VEAANSTIACLSLPFAIEPTLNTTPFAGKPSQFQCTDT 352
           D VE AN T+AC   P   EP +N  PFA   ++ Q + T
Sbjct: 600 DIVEQANPTLACK--PVVTEPVINDDPFAAMANELQASTT 637