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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914523
Clone id YMU001_000059_H01
Library
Length 345
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000059_H01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CTCAAGGCCAACATACAAATAGGTGCGGCATACAGATTAAACAGTCCAACACATCAACTG
GGTAGCTGTCACAAATGATAGTGCAGCAACAATTCAAAAATACATATCCAAAGAGGCAGA
GGAGACTTGATACGAGATTGGGACTATAAGATGGGCTGGTCTCCCCCTTGCAGAGGGATC
TTTAATTACTATGGGAAGATTTTACAAGCACATGGGAATTAGAGATTATCTTTAATTGCT
ATGGGGAGATGTTGCACACACGTACATGGGAGGGTTGGACGCGAATTTTCAGGTCTGTCA
AGCATATTAACCACCCTTGCAACGATAAAGGTCTACTAGCACATA
■■Homology search results ■■ -
sp_hit_id Q7MVD7
Definition sp|Q7MVD7|SYV_PORGI Valyl-tRNA synthetase OS=Porphyromonas gingivalis
Align length 44
Score (bit) 32.3
E-value 0.75
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914523|Adiantum capillus-veneris mRNA, clone:
YMU001_000059_H01.
         (345 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7MVD7|SYV_PORGI Valyl-tRNA synthetase OS=Porphyromonas gingi...    32   0.75 
sp|A6L3G7|SYV_BACV8 Valyl-tRNA synthetase OS=Bacteroides vulgatu...    32   1.3  
sp|A0M5I5|SYV_GRAFK Valyl-tRNA synthetase OS=Gramella forsetii (...    31   2.2  
sp|Q89ZM4|SYV_BACTN Valyl-tRNA synthetase OS=Bacteroides thetaio...    31   2.2  
sp|Q8JZM8|MUC4_MOUSE Mucin-4 OS=Mus musculus GN=Muc4 PE=2 SV=1         29   6.4  

>sp|Q7MVD7|SYV_PORGI Valyl-tRNA synthetase OS=Porphyromonas
           gingivalis GN=valS PE=3 SV=1
          Length = 876

 Score = 32.3 bits (72), Expect = 0.75
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +3

Query: 186 LLWEDFTSTWELEIIFNCYGEMLHTRTWEGWTRIFRSVKHINHP 317
           L W+DF+S W LE++   YG+ +  +T+      F  +  + HP
Sbjct: 646 LFWDDFSS-WYLEMVKPAYGQPMDAKTYGSTIGFFDQLLRLLHP 688


>sp|A6L3G7|SYV_BACV8 Valyl-tRNA synthetase OS=Bacteroides vulgatus
           (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=valS PE=3
           SV=1
          Length = 875

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +3

Query: 186 LLWEDFTSTWELEIIFNCYGEMLHTRTWEGWTRIFRSVKHINHP 317
           L W++F+S W LE+I   YG+ +   T+E     F ++  + HP
Sbjct: 646 LFWDEFSS-WYLEMIKPAYGQPIDKATYEKTLGFFDNLLKLLHP 688


>sp|A0M5I5|SYV_GRAFK Valyl-tRNA synthetase OS=Gramella forsetii
           (strain KT0803) GN=valS PE=3 SV=1
          Length = 876

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +3

Query: 186 LLWEDFTSTWELEIIFNCYGEMLHTRTWEGWTRIFRSVKHINHP 317
           L+W+D+ S W LE++   YGE +  +T++    I      I HP
Sbjct: 647 LIWDDYCS-WFLEMVKPGYGEPMDAKTYKAIIAILEENLKILHP 689


>sp|Q89ZM4|SYV_BACTN Valyl-tRNA synthetase OS=Bacteroides
           thetaiotaomicron GN=valS PE=3 SV=1
          Length = 879

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +3

Query: 186 LLWEDFTSTWELEIIFNCYGEMLHTRTWEGWTRIFRSVKHINHP 317
           L W++F+S W LE+I   YG+ +   T+        ++ H+ HP
Sbjct: 647 LFWDEFSS-WYLEMIKPAYGQGIDRTTYSATLCFLDNLLHLLHP 689


>sp|Q8JZM8|MUC4_MOUSE Mucin-4 OS=Mus musculus GN=Muc4 PE=2 SV=1
          Length = 3443

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 13/33 (39%), Positives = 23/33 (69%)
 Frame = -3

Query: 223  SNSHVLVKSSHSN*RSLCKGETSPSYSPNLVSS 125
            + SH L+++  S+ R++  GET+ SY+P + SS
Sbjct: 1668 ATSHDLIETETSSQRTISPGETTTSYAPIMSSS 1700
tr_hit_id A7VAS6
Definition tr|A7VAS6|A7VAS6_BACUN Putative uncharacterized protein OS=Bacteroides uniformis ATCC 8492
Align length 44
Score (bit) 35.8
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914523|Adiantum capillus-veneris mRNA, clone:
YMU001_000059_H01.
         (345 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7VAS6|A7VAS6_BACUN Putative uncharacterized protein OS=Bacte...    36   1.1  
tr|B7AG28|B7AG28_9BACE Putative uncharacterized protein OS=Bacte...    35   1.9  
tr|A4CPB3|A4CPB3_9FLAO Valyl-tRNA synthetase OS=Robiginitalea bi...    35   1.9  
tr|B0NVH0|B0NVH0_BACSE Putative uncharacterized protein OS=Bacte...    35   2.4  
tr|A7PBA6|A7PBA6_VITVI Chromosome chr16 scaffold_10, whole genom...    34   4.2  
tr|A5AQE9|A5AQE9_VITVI Putative uncharacterized protein OS=Vitis...    34   4.2  
tr|B3CE98|B3CE98_9BACE Putative uncharacterized protein OS=Bacte...    33   5.4  
tr|Q22D11|Q22D11_TETTH Putative uncharacterized protein OS=Tetra...    33   9.3  

>tr|A7VAS6|A7VAS6_BACUN Putative uncharacterized protein
           OS=Bacteroides uniformis ATCC 8492 GN=BACUNI_04708 PE=3
           SV=1
          Length = 877

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 15/44 (34%), Positives = 27/44 (61%)
 Frame = +3

Query: 186 LLWEDFTSTWELEIIFNCYGEMLHTRTWEGWTRIFRSVKHINHP 317
           L W++F+S W LE+I   YG+ ++ + +E     F ++ H+ HP
Sbjct: 647 LFWDEFSS-WYLEMIKPAYGQPINRKVYEATIGFFDNLLHLLHP 689


>tr|B7AG28|B7AG28_9BACE Putative uncharacterized protein
           OS=Bacteroides eggerthii DSM 20697 GN=BACEGG_01352 PE=4
           SV=1
          Length = 894

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 15/44 (34%), Positives = 27/44 (61%)
 Frame = +3

Query: 186 LLWEDFTSTWELEIIFNCYGEMLHTRTWEGWTRIFRSVKHINHP 317
           L W++F+S W LE+I   YG+ ++ + +E     F ++ H+ HP
Sbjct: 664 LFWDEFSS-WYLEMIKPAYGQPINKKVYETTIGFFDNLLHLLHP 706


>tr|A4CPB3|A4CPB3_9FLAO Valyl-tRNA synthetase OS=Robiginitalea
           biformata HTCC2501 GN=RB2501_02380 PE=3 SV=1
          Length = 876

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +3

Query: 186 LLWEDFTSTWELEIIFNCYGEMLHTRTWEGWTRIFRSVKHINHP 317
           LLWEDF S W LEI+   YGE +  +T+     +F     + HP
Sbjct: 647 LLWEDFCS-WLLEIVKPAYGEPIDRKTYAEVIGLFEDNLRLLHP 689


>tr|B0NVH0|B0NVH0_BACSE Putative uncharacterized protein
           OS=Bacteroides stercoris ATCC 43183 GN=BACSTE_03501 PE=3
           SV=1
          Length = 894

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 14/44 (31%), Positives = 28/44 (63%)
 Frame = +3

Query: 186 LLWEDFTSTWELEIIFNCYGEMLHTRTWEGWTRIFRSVKHINHP 317
           L W++F+S W LE+I   YG+ ++ + ++    +F ++ H+ HP
Sbjct: 664 LFWDEFSS-WYLEMIKPAYGQPINKKVYDTTIGLFDNLLHLLHP 706


>tr|A7PBA6|A7PBA6_VITVI Chromosome chr16 scaffold_10, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00014013001
           PE=4 SV=1
          Length = 553

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
 Frame = -3

Query: 208 LVKSSHSN*RSLCKGETSPSYSPNLVSSLL-------CLFGYVFLNCCCTIICDSYPVDV 50
           L++S H   + L K + SPS SPN   ++L       C   Y+  NC    IC  + ++ 
Sbjct: 428 LIQSHHHACQFLKKIKGSPSVSPNSQGTILCSLCKRDCYVAYINCNCYSRPICLFHEIEA 487

Query: 49  LDC 41
           L+C
Sbjct: 488 LNC 490


>tr|A5AQE9|A5AQE9_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_005969 PE=4 SV=1
          Length = 591

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
 Frame = -3

Query: 208 LVKSSHSN*RSLCKGETSPSYSPNLVSSLL-------CLFGYVFLNCCCTIICDSYPVDV 50
           L++S H   + L K + SPS SPN   ++L       C   Y+  NC    IC  + ++ 
Sbjct: 424 LIQSHHHACQFLKKIKGSPSVSPNSQGTILCSLCKRDCYVAYINCNCYSRPICLFHEIEA 483

Query: 49  LDC 41
           L+C
Sbjct: 484 LNC 486


>tr|B3CE98|B3CE98_9BACE Putative uncharacterized protein
           OS=Bacteroides intestinalis DSM 17393 GN=BACINT_04132
           PE=4 SV=1
          Length = 876

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +3

Query: 186 LLWEDFTSTWELEIIFNCYGEMLHTRTWEGWTRIFRSVKHINHP 317
           L W++F+S W LE+I   YG+ +H+         F ++ H+ HP
Sbjct: 647 LFWDEFSS-WYLEMIKPAYGQGIHSSIHSAAISYFDNLLHLLHP 689


>tr|Q22D11|Q22D11_TETTH Putative uncharacterized protein
           OS=Tetrahymena thermophila SB210 GN=TTHERM_01006490 PE=4
           SV=2
          Length = 1669

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -3

Query: 133 VSSLLCLFGYVFLNCCCTIICDS--YPVDVLDCLICMPHLFVC 11
           +S L C  G  +LN  C  IC S  +P+D+  C  C P    C
Sbjct: 840 ISCLTCRPGRYYLNGLCVTICPSNTFPLDLKGCQPCHPSCATC 882