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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914528
Clone id YMU001_000059_H06
Library
Length 565
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000059_H06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTTTTTCTGTTTTTGAACAAGTGCACCATCACTTATTACTAGGTAGTGATGTGTTCTCTT
AAACTTGAAACTCACAATCCATTGAACACGAGAAGCCATACAAGCGTCAGCTACCTTTGG
AGCATGTGCAGGAGACCCAGAAGAAAAGGCAAAAACTTATCATGCAAACACAAACTGTAG
AATACAACTTCTCAATAGAAGAAAAAAGAATTAAAAGGAGAAACCCAACTTTGTCACCAA
CTGCTGGAATCTATCAATTCTAGCAATAGTTTGGCCTGCGAGCGGAGGACCTCTTCTCTT
GCCTTGCTGATGGACAGGGACGCCGTCGCCTGGTCTACCTGCTCTAGAACTCTCAAAAAC
ACGTCTCCGAGCAGCTCATGCAACTCTTCTAACGCACCCTCCGCTGACAATTGGAGCTCT
GCGTTCTCTTCGTTGCCACTTGGAAGTAAATCACCCACTAAAAGCAGTAAGAACTCCGAG
CATTTCAGCCTCATTGCTTTATCTACATGACCATGTATCACCAGCTCTGAAATCTTCTTT
ACACCGAGTACCTGCAGGTAATATC
■■Homology search results ■■ -
sp_hit_id Q00586
Definition sp|Q00586|FRQ_CRESP Frequency clock protein OS=Creopus spinulosus
Align length 65
Score (bit) 34.3
E-value 0.43
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914528|Adiantum capillus-veneris mRNA, clone:
YMU001_000059_H06.
         (565 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q00586|FRQ_CRESP Frequency clock protein OS=Creopus spinulosu...    34   0.43 
sp|Q9HUN4|ALR1_PSEAE Alanine racemase, biosynthetic OS=Pseudomon...    31   3.7  
sp|Q05146|OMPA_BORAV Outer membrane protein A OS=Bordetella aviu...    31   4.9  
sp|O08815|SLK_RAT STE20-like serine/threonine-protein kinase OS=...    30   8.2  
sp|O54988|SLK_MOUSE STE20-like serine/threonine-protein kinase O...    30   8.2  
sp|Q9H2G2|SLK_HUMAN STE20-like serine/threonine-protein kinase O...    30   8.2  
sp|O55092|SLK_CAVPO STE20-like serine/threonine-protein kinase O...    30   8.2  

>sp|Q00586|FRQ_CRESP Frequency clock protein OS=Creopus spinulosus
           GN=FRQ PE=3 SV=1
          Length = 1015

 Score = 34.3 bits (77), Expect = 0.43
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
 Frame = +3

Query: 69  NSQSIEHEKPYKRQLPL----EHVQETQKKRQKLIMQTQTVEYNFSIEEKRIKRRNPTLS 236
           N Q ++H   Y R++P       V  T+K+++KL+++     +   I  K ++R  PTL+
Sbjct: 280 NEQKVDH---YLREIPEGLYPRFVSMTEKEKKKLVVRRLEQIFTGKIGGKHVRRTQPTLT 336

Query: 237 PTAGI 251
           P   I
Sbjct: 337 PAVSI 341


>sp|Q9HUN4|ALR1_PSEAE Alanine racemase, biosynthetic OS=Pseudomonas
           aeruginosa GN=alr PE=3 SV=1
          Length = 358

 Score = 31.2 bits (69), Expect = 3.7
 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
 Frame = +2

Query: 332 GLPALELSKTRLRAAHATLLTHPPL-TIGALRSLRCHLEVNHPLKAVRTPSISASLLYLH 508
           G+  L      LRA HA L +HP +  +  +    C  E NHPL   +  S    L    
Sbjct: 127 GMHRLGFDPAALRAWHARLRSHPGVRELNLISHFACADERNHPLTEQQLESFLGLLDLDF 186

Query: 509 DHVSPALKSSLHRVPAGNI 565
           D  S A  +++  +PA ++
Sbjct: 187 DQRSLANSAAVLTIPAAHM 205


>sp|Q05146|OMPA_BORAV Outer membrane protein A OS=Bordetella avium
           GN=ompA PE=3 SV=1
          Length = 194

 Score = 30.8 bits (68), Expect = 4.9
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 357 FESSRAGRPG-DGVPVHQQGKRRGPPLAGQTIARIDRF 247
           F +   G PG DGVPV QQ K +  P+A + +   D F
Sbjct: 51  FWTPATGIPGCDGVPVAQQPKEKPAPMAAKVVFNADTF 88


>sp|O08815|SLK_RAT STE20-like serine/threonine-protein kinase
            OS=Rattus norvegicus GN=Slk PE=1 SV=1
          Length = 1206

 Score = 30.0 bits (66), Expect = 8.2
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +3

Query: 81   IEHEKPYKRQLPLEHVQETQKKRQKLIMQTQTVEYNFS 194
            +EHE    ++L  EH QE ++ R+KL  + +T+E  F+
Sbjct: 1125 VEHETQKLKELDEEHSQELKEWREKLRPRKKTLEEEFA 1162


>sp|O54988|SLK_MOUSE STE20-like serine/threonine-protein kinase OS=Mus
            musculus GN=Slk PE=1 SV=2
          Length = 1233

 Score = 30.0 bits (66), Expect = 8.2
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +3

Query: 81   IEHEKPYKRQLPLEHVQETQKKRQKLIMQTQTVEYNFS 194
            +EHE    ++L  EH QE ++ R+KL  + +T+E  F+
Sbjct: 1155 VEHETQKLKELDEEHSQELKEWREKLRPRKKTLEEEFA 1192


>sp|Q9H2G2|SLK_HUMAN STE20-like serine/threonine-protein kinase
            OS=Homo sapiens GN=SLK PE=1 SV=1
          Length = 1235

 Score = 30.0 bits (66), Expect = 8.2
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +3

Query: 81   IEHEKPYKRQLPLEHVQETQKKRQKLIMQTQTVEYNFS 194
            +EHE    ++L  EH QE ++ R+KL  + +T+E  F+
Sbjct: 1157 VEHETQKLKELDEEHSQELKEWREKLRPRKKTLEEEFA 1194


>sp|O55092|SLK_CAVPO STE20-like serine/threonine-protein kinase
            OS=Cavia porcellus GN=SLK PE=1 SV=1
          Length = 1231

 Score = 30.0 bits (66), Expect = 8.2
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +3

Query: 81   IEHEKPYKRQLPLEHVQETQKKRQKLIMQTQTVEYNFS 194
            +EHE    ++L  EH QE ++ R+KL  + +T+E  F+
Sbjct: 1153 VEHETQKLKELDEEHSQELKEWREKLRPRKKTLEEEFA 1190
tr_hit_id A9NN48
Definition tr|A9NN48|A9NN48_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 108
Score (bit) 40.0
E-value 0.088
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914528|Adiantum capillus-veneris mRNA, clone:
YMU001_000059_H06.
         (565 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NN48|A9NN48_PICSI Putative uncharacterized protein OS=Picea...    40   0.088
tr|A7Z6X1|A7Z6X1_BACA2 ComEC OS=Bacillus amyloliquefaciens (stra...    36   1.7  
tr|A9SGU8|A9SGU8_PHYPA Predicted protein (Fragment) OS=Physcomit...    35   2.2  
tr|B3DJX2|B3DJX2_DANRE Snx19a protein OS=Danio rerio GN=snx19a P...    34   4.9  
tr|A2BFT9|A2BFT9_DANRE Novel protein similar to vertebrate sorti...    34   4.9  
tr|Q1RPS7|Q1RPS7_PHYPA Impaired sucrose induction 1-like protein...    34   6.3  
tr|A9SE40|A9SE40_PHYPA Predicted protein OS=Physcomitrella paten...    34   6.3  
tr|B6UA54|B6UA54_MAIZE Ubiquitin-protein ligase OS=Zea mays PE=2...    33   8.3  

>tr|A9NN48|A9NN48_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 342

 Score = 40.0 bits (92), Expect = 0.088
 Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 8/108 (7%)
 Frame = -3

Query: 545 GVKKISELVIHGHVDKAMRLKCSEFXXXXXXXXLPSG--------NEENAELQLSXXXXX 390
           GV++++ELV +G++D+ +RLKC+EF        +PS         +EE  E         
Sbjct: 234 GVRQVAELVKNGNIDEELRLKCAEFLLLVVGNVIPSSSKFIDNIEDEEGREEPSRIESVQ 293

Query: 389 XXXXXXXGDVFLRVLEQVDQATASLSISKAREEVLRSQAKLLLELIDS 246
                  G+    +L    Q  +S+  S+ ++  L+ QA+ LL+ +DS
Sbjct: 294 DDILELLGEEIASLLWAAGQLWSSID-SERKQSSLQFQAQQLLDCLDS 340


>tr|A7Z6X1|A7Z6X1_BACA2 ComEC OS=Bacillus amyloliquefaciens (strain
           FZB42) GN=comEC PE=4 SV=1
          Length = 783

 Score = 35.8 bits (81), Expect = 1.7
 Identities = 15/35 (42%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
 Frame = -1

Query: 223 FLLLILFSSIE-KLYSTVCVCMISFCLFFWVSCTC 122
           FLL +LF  ++ K Y+ V VC++SFC++F++   C
Sbjct: 31  FLLYLLFIIVKTKQYAPVIVCLVSFCVYFFLYTVC 65


>tr|A9SGU8|A9SGU8_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_6580 PE=3 SV=1
          Length = 166

 Score = 35.4 bits (80), Expect = 2.2
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = +3

Query: 90  EKPYKRQLPLEHVQETQKKRQKLIMQTQTVEYNFSIEEKRIKRRNPTLSPTAGI 251
           E P + ++  +  Q+ +KKR+    Q +++EYNF IE K    R   L+   G+
Sbjct: 63  EDPAEEEIGDDFTQQVEKKRRLTFDQVRSLEYNFEIENKLEPERKMQLAKELGL 116


>tr|B3DJX2|B3DJX2_DANRE Snx19a protein OS=Danio rerio GN=snx19a PE=2
            SV=1
          Length = 913

 Score = 34.3 bits (77), Expect = 4.9
 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 3/90 (3%)
 Frame = +2

Query: 242  CWNLSILAI---VWPASGGPLLLPC*WTGTPSPGLPALELSKTRLRAAHATLLTHPPLTI 412
            CW + +  +   VWP    P +        P P     +  KTRL+     +   P L  
Sbjct: 794  CWVIYLRVLQDAVWPDGELPAV--------PRPERSPEQREKTRLQCLQCLMQLFPELIT 845

Query: 413  GALRSLRCHLEVNHPLKAVRTPSISASLLY 502
              L S +C L   H L++++  SI+  L+Y
Sbjct: 846  DMLGSEKCRLVWEHVLESLQDQSINRHLVY 875


>tr|A2BFT9|A2BFT9_DANRE Novel protein similar to vertebrate sorting
            nexin 19 (SNX19) (Fragment) OS=Danio rerio
            GN=DKEY-127J5.4-001 PE=4 SV=1
          Length = 883

 Score = 34.3 bits (77), Expect = 4.9
 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 3/90 (3%)
 Frame = +2

Query: 242  CWNLSILAI---VWPASGGPLLLPC*WTGTPSPGLPALELSKTRLRAAHATLLTHPPLTI 412
            CW + +  +   VWP    P +        P P     +  KTRL+     +   P L  
Sbjct: 794  CWVIYLRVLQDAVWPDGELPAV--------PRPERSPEQREKTRLQCLQCLMQLFPELIT 845

Query: 413  GALRSLRCHLEVNHPLKAVRTPSISASLLY 502
              L S +C L   H L++++  SI+  L+Y
Sbjct: 846  DMLGSEKCRLVWEHVLESLQDQSINRHLVY 875


>tr|Q1RPS7|Q1RPS7_PHYPA Impaired sucrose induction 1-like protein
           OS=Physcomitrella patens GN=isi1 PE=2 SV=1
          Length = 315

 Score = 33.9 bits (76), Expect = 6.3
 Identities = 16/41 (39%), Positives = 27/41 (65%)
 Frame = -3

Query: 554 QVLGVKKISELVIHGHVDKAMRLKCSEFXXXXXXXXLPSGN 432
           +V G++KI+E++ + H+D ++RLK +EF        LPS N
Sbjct: 208 RVHGLRKIAEMLRNSHLDPSIRLKIAEFIVILMSQILPSSN 248


>tr|A9SE40|A9SE40_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_164468 PE=4 SV=1
          Length = 498

 Score = 33.9 bits (76), Expect = 6.3
 Identities = 16/41 (39%), Positives = 27/41 (65%)
 Frame = -3

Query: 554 QVLGVKKISELVIHGHVDKAMRLKCSEFXXXXXXXXLPSGN 432
           +V G++KI+E++ + H+D ++RLK +EF        LPS N
Sbjct: 391 RVHGLRKIAEMLRNSHLDPSIRLKIAEFIVILMSQILPSSN 431


>tr|B6UA54|B6UA54_MAIZE Ubiquitin-protein ligase OS=Zea mays PE=2
           SV=1
          Length = 376

 Score = 33.5 bits (75), Expect = 8.3
 Identities = 22/61 (36%), Positives = 31/61 (50%)
 Frame = +2

Query: 323 PSPGLPALELSKTRLRAAHATLLTHPPLTIGALRSLRCHLEVNHPLKAVRTPSISASLLY 502
           P    P+L L     RA HA L  HP   + A R+LRC     H L ++R PS ++ + +
Sbjct: 36  PRAAHPSLALVS---RAFHALLCRHPEPLLAARRTLRC--SEPHVLLSLRPPSSASPIFF 90

Query: 503 L 505
           L
Sbjct: 91  L 91