NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914536
Clone id YMU001_000060_A04
Library
Length 573
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000060_A04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GATCGTTCCTCCAAGGAGAGAGAAGAATACATACTGTGGACGAAGCAAGGAGTTCCTTGC
TTCGAAAGGGGTTCTTGTCTACTATGTAGCTGGATGAGACATGCTCAAATCGAAGTATAG
CTACAGCAGTAAGCCCTTTGTACCCATGTATACTGAGAATAGCCCTCTGCAACAGCAGCA
GCAACTCTTAGACCTTGAGATTGGCCTATCTGGACGACGCCCACCTCGTAAATTCAAGCG
TTCTGGTCTACCCAGAATGCTGCAGCGTCTCCAACATCGCCACAAGGTATCCACACTGTT
TATCCTCATCGGCTCTTTTTGTACTGCTGTTTGCATCCTTTATCTGATTGGCATTGTGTA
TAAGAGCCTTTTGGCAGCCTCAGCGCCCTCACTTCCCCTTCTCTATCACCCCTACCCCTA
CCGCANAGCTTCAAAACCTTGTCATGGTTGCTGGCCATGCTGTGTTCACCAACACAGGAT
GTGATAAGGTTGACATGGAAGGATCATGGTTCTTAGAGTCGTATCAGAAACACCCAGGTC
AAGCGCTCACATTCATCAATCACATTAGAGCTG
■■Homology search results ■■ -
sp_hit_id P87055
Definition sp|P87055|YDJ7_SCHPO Uncharacterized protein C57A10.07 OS=Schizosaccharomyces pombe
Align length 52
Score (bit) 38.1
E-value 0.031
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914536|Adiantum capillus-veneris mRNA, clone:
YMU001_000060_A04.
         (573 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P87055|YDJ7_SCHPO Uncharacterized protein C57A10.07 OS=Schizo...    38   0.031
sp|P38823|YHR5_YEAST RING finger protein YHR115C OS=Saccharomyce...    33   1.0  
sp|P53924|YNL6_YEAST RING finger protein YNL116W OS=Saccharomyce...    32   1.7  
sp|Q7URW6|RPOB_RHOBA DNA-directed RNA polymerase subunit beta OS...    30   8.5  

>sp|P87055|YDJ7_SCHPO Uncharacterized protein C57A10.07
           OS=Schizosaccharomyces pombe GN=SPAC57A10.07 PE=2 SV=1
          Length = 311

 Score = 38.1 bits (87), Expect = 0.031
 Identities = 20/52 (38%), Positives = 29/52 (55%)
 Frame = +3

Query: 417 PTAXLQNLVMVAGHAVFTNTGCDKVDMEGSWFLESYQKHPGQALTFINHIRA 572
           P   L +L++VAGHAV+   G    + +  W LE YQK  G+   F  H+R+
Sbjct: 72  PLKNLTHLIIVAGHAVWLG-GSTNGEDDSEWILEPYQK--GEGKVFAQHVRS 120


>sp|P38823|YHR5_YEAST RING finger protein YHR115C OS=Saccharomyces
           cerevisiae GN=YHR115C PE=1 SV=1
          Length = 416

 Score = 33.1 bits (74), Expect = 1.0
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +3

Query: 477 GCDKVDMEGSWFLESYQKHPGQALTFINHIR 569
           GC KVD +G+WFL+  +   G   TF+NH R
Sbjct: 224 GCFKVDDQGNWFLKDVKSSSG---TFLNHQR 251


>sp|P53924|YNL6_YEAST RING finger protein YNL116W OS=Saccharomyces
           cerevisiae GN=YNL116W PE=1 SV=1
          Length = 522

 Score = 32.3 bits (72), Expect = 1.7
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +3

Query: 441 VMVAGHAVFTNTGCDKVDMEGSWFLESYQKHPGQALTFINHIR 569
           V+     V    GC KVD +G+W+++  +   G   TF+NH R
Sbjct: 318 VVFKSKVVSRTHGCFKVDSQGNWYIKDVKSSSG---TFLNHQR 357


>sp|Q7URW6|RPOB_RHOBA DNA-directed RNA polymerase subunit beta
           OS=Rhodopirellula baltica GN=rpoB PE=3 SV=2
          Length = 1240

 Score = 30.0 bits (66), Expect = 8.5
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +3

Query: 15  GERRIHTVDEARSSLLRKGFL 77
           G RR+ T+DE  S  LRKGFL
Sbjct: 398 GNRRLRTIDELASEELRKGFL 418
tr_hit_id A7NSI8
Definition tr|A7NSI8|A7NSI8_VITVI Chromosome chr18 scaffold_1, whole genome shotgun sequence OS=Vitis vinifera
Align length 51
Score (bit) 82.8
E-value 1.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914536|Adiantum capillus-veneris mRNA, clone:
YMU001_000060_A04.
         (573 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7NSI8|A7NSI8_VITVI Chromosome chr18 scaffold_1, whole genome...    83   1e-14
tr|A5BK22|A5BK22_VITVI Putative uncharacterized protein OS=Vitis...    81   4e-14
tr|Q84W62|Q84W62_ARATH Putative uncharacterized protein At1g2137...    78   4e-13
tr|Q7XRA6|Q7XRA6_ORYSJ Os04g0438500 protein OS=Oryza sativa subs...    77   9e-13
tr|Q01I58|Q01I58_ORYSA H0315A08.13 protein OS=Oryza sativa GN=H0...    77   9e-13
tr|B8AU23|B8AU23_ORYSI Putative uncharacterized protein OS=Oryza...    77   9e-13
tr|A6N1M6|A6N1M6_ORYSI Putative uncharacterized protein (Fragmen...    77   9e-13
tr|A3AU44|A3AU44_ORYSJ Putative uncharacterized protein OS=Oryza...    77   9e-13
tr|B7FJT1|B7FJT1_MEDTR Putative uncharacterized protein OS=Medic...    75   3e-12
tr|A9S8Y1|A9S8Y1_PHYPA Predicted protein OS=Physcomitrella paten...    71   4e-11
tr|A9TT09|A9TT09_PHYPA Predicted protein OS=Physcomitrella paten...    64   5e-09
tr|A8I2Q0|A8I2Q0_CHLRE Predicted protein (Fragment) OS=Chlamydom...    62   3e-08
tr|Q5KIX1|Q5KIX1_CRYNE Cytoplasm protein, putative (Putative unc...    42   0.024
tr|B6JXP9|B6JXP9_SCHJP Putative uncharacterized protein OS=Schiz...    42   0.032
tr|A8Q5H7|A8Q5H7_MALGO Putative uncharacterized protein OS=Malas...    41   0.041
tr|Q4PFC7|Q4PFC7_USTMA Putative uncharacterized protein OS=Ustil...    39   0.16 
tr|B8C2M3|B8C2M3_THAPS Predicted protein (Fragment) OS=Thalassio...    38   0.35 
tr|A7EI15|A7EI15_SCLS1 Putative uncharacterized protein OS=Scler...    38   0.46 
tr|A4S921|A4S921_OSTLU Predicted protein OS=Ostreococcus lucimar...    37   0.60 
tr|A2QU27|A2QU27_ASPNC Similarity to hypothetical protein 12F11....    36   1.3  
tr|Q00TI8|Q00TI8_OSTTA [S] KOG4533 Uncharacterized conserved pro...    35   2.3  
tr|B6QW33|B6QW33_PENMA DUF218 domain protein OS=Penicillium marn...    34   5.0  
tr|Q6FLE8|Q6FLE8_CANGA Similar to uniprot|P53924 Saccharomyces c...    34   6.6  

>tr|A7NSI8|A7NSI8_VITVI Chromosome chr18 scaffold_1, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00014279001
           PE=4 SV=1
          Length = 345

 Score = 82.8 bits (203), Expect = 1e-14
 Identities = 37/51 (72%), Positives = 42/51 (82%)
 Frame = +3

Query: 417 PTAXLQNLVMVAGHAVFTNTGCDKVDMEGSWFLESYQKHPGQALTFINHIR 569
           P   LQNLVMVAGH+VFT++ C KVD E SWFLESYQKHPGQA TF+ HI+
Sbjct: 103 PFTKLQNLVMVAGHSVFTSSSCGKVDKEDSWFLESYQKHPGQAATFLAHIK 153


>tr|A5BK22|A5BK22_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_031664 PE=4 SV=1
          Length = 338

 Score = 81.3 bits (199), Expect = 4e-14
 Identities = 36/51 (70%), Positives = 41/51 (80%)
 Frame = +3

Query: 417 PTAXLQNLVMVAGHAVFTNTGCDKVDMEGSWFLESYQKHPGQALTFINHIR 569
           P   LQNLVMVAGH+VFT++ C KVD E SWFLESYQKHPGQ  TF+ HI+
Sbjct: 96  PFTKLQNLVMVAGHSVFTSSSCGKVDKEDSWFLESYQKHPGQVATFLAHIK 146


>tr|Q84W62|Q84W62_ARATH Putative uncharacterized protein At1g21370
           OS=Arabidopsis thaliana GN=At1g21370 PE=2 SV=1
          Length = 342

 Score = 77.8 bits (190), Expect = 4e-13
 Identities = 34/51 (66%), Positives = 44/51 (86%)
 Frame = +3

Query: 417 PTAXLQNLVMVAGHAVFTNTGCDKVDMEGSWFLESYQKHPGQALTFINHIR 569
           P A L+NLVMVAGH+V+T++ C KV+ E SWFLESYQK+PGQA TF++HI+
Sbjct: 102 PFANLKNLVMVAGHSVYTSSDCGKVEKEDSWFLESYQKNPGQAATFLSHIQ 152


>tr|Q7XRA6|Q7XRA6_ORYSJ Os04g0438500 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0006B20.20 PE=4 SV=2
          Length = 341

 Score = 76.6 bits (187), Expect = 9e-13
 Identities = 32/51 (62%), Positives = 40/51 (78%)
 Frame = +3

Query: 417 PTAXLQNLVMVAGHAVFTNTGCDKVDMEGSWFLESYQKHPGQALTFINHIR 569
           P   L+NLVMVAGH+++T+  C K+D E SWFLE YQKHPGQA TF+ HI+
Sbjct: 99  PLPELRNLVMVAGHSIYTSESCGKIDREDSWFLEPYQKHPGQAATFLAHIK 149


>tr|Q01I58|Q01I58_ORYSA H0315A08.13 protein OS=Oryza sativa
           GN=H0315A08.13 PE=4 SV=1
          Length = 341

 Score = 76.6 bits (187), Expect = 9e-13
 Identities = 32/51 (62%), Positives = 40/51 (78%)
 Frame = +3

Query: 417 PTAXLQNLVMVAGHAVFTNTGCDKVDMEGSWFLESYQKHPGQALTFINHIR 569
           P   L+NLVMVAGH+++T+  C K+D E SWFLE YQKHPGQA TF+ HI+
Sbjct: 99  PLPELRNLVMVAGHSIYTSESCGKIDREDSWFLEPYQKHPGQAATFLAHIK 149


>tr|B8AU23|B8AU23_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_15996 PE=4 SV=1
          Length = 341

 Score = 76.6 bits (187), Expect = 9e-13
 Identities = 32/51 (62%), Positives = 40/51 (78%)
 Frame = +3

Query: 417 PTAXLQNLVMVAGHAVFTNTGCDKVDMEGSWFLESYQKHPGQALTFINHIR 569
           P   L+NLVMVAGH+++T+  C K+D E SWFLE YQKHPGQA TF+ HI+
Sbjct: 99  PLPELRNLVMVAGHSIYTSESCGKIDREDSWFLEPYQKHPGQAATFLAHIK 149


>tr|A6N1M6|A6N1M6_ORYSI Putative uncharacterized protein (Fragment)
           OS=Oryza sativa subsp. indica PE=2 SV=1
          Length = 244

 Score = 76.6 bits (187), Expect = 9e-13
 Identities = 32/51 (62%), Positives = 40/51 (78%)
 Frame = +3

Query: 417 PTAXLQNLVMVAGHAVFTNTGCDKVDMEGSWFLESYQKHPGQALTFINHIR 569
           P   L+NLVMVAGH+++T+  C K+D E SWFLE YQKHPGQA TF+ HI+
Sbjct: 99  PLPELRNLVMVAGHSIYTSESCGKIDREDSWFLEPYQKHPGQAATFLAHIK 149


>tr|A3AU44|A3AU44_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_014316 PE=4 SV=1
          Length = 489

 Score = 76.6 bits (187), Expect = 9e-13
 Identities = 32/51 (62%), Positives = 40/51 (78%)
 Frame = +3

Query: 417 PTAXLQNLVMVAGHAVFTNTGCDKVDMEGSWFLESYQKHPGQALTFINHIR 569
           P   L+NLVMVAGH+++T+  C K+D E SWFLE YQKHPGQA TF+ HI+
Sbjct: 99  PLPELRNLVMVAGHSIYTSESCGKIDREDSWFLEPYQKHPGQAATFLAHIK 149


>tr|B7FJT1|B7FJT1_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 343

 Score = 75.1 bits (183), Expect = 3e-12
 Identities = 31/50 (62%), Positives = 42/50 (84%)
 Frame = +3

Query: 417 PTAXLQNLVMVAGHAVFTNTGCDKVDMEGSWFLESYQKHPGQALTFINHI 566
           P + L+NLVMVAGH+V+ ++GC K++ E SW+LESYQK+PGQA TF+ HI
Sbjct: 102 PFSKLRNLVMVAGHSVYMSSGCGKIEKEDSWYLESYQKNPGQAATFVKHI 151


>tr|A9S8Y1|A9S8Y1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_126031 PE=4 SV=1
          Length = 302

 Score = 71.2 bits (173), Expect = 4e-11
 Identities = 31/47 (65%), Positives = 39/47 (82%)
 Frame = +3

Query: 429 LQNLVMVAGHAVFTNTGCDKVDMEGSWFLESYQKHPGQALTFINHIR 569
           L++LVMVAGHAV+T++ C K + E SWFLE YQKHPGQA TF+ HI+
Sbjct: 64  LRSLVMVAGHAVYTSSKCGKPEDEDSWFLEPYQKHPGQASTFVEHIK 110