NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914563
Clone id YMU001_000060_D01
Library
Length 436
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000060_D01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GTCCATTCGTCTAGAGTCAGATTGTGCATAACCTTTTTCTTTGCAACTGCCTCTAGGAGG
TGTAACTGGGTGTTAATACACTATAATGGGCAGCTAATGGCATCGGCAGATATCCTAGGA
CACATAGTCCTCATGTATCTGGTCTTGTGTCTATTGGATCAGGAAAGCATGAGAAGTGCA
CCAATGTGTTATTTAAAATCATTACTTTCAGCAGGTAAAAAATTGGGCTCTTGAAGGGAA
ACAAAACTAAAGTCATTAAGAAGTATAAAAAAAGAGGTCACCCTGCTTATGGAGTGCTAT
GGGATTGGAGAGCATTTGGCATGTTTTCATTGGAAGGTCGCCCCAAGCAGTTGGCTCCCT
AATATTCTGTTGGCAGGCTGGCAGCTCATATTTGGAGCCTCAGAGAACGTTCTTGATACT
TATGCTTTTCCTGCCC
■■Homology search results ■■ -
sp_hit_id P79401
Definition sp|P79401|CP3AT_PIG Cytochrome P450 3A29 OS=Sus scrofa
Align length 30
Score (bit) 31.6
E-value 1.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914563|Adiantum capillus-veneris mRNA, clone:
YMU001_000060_D01.
         (436 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P79401|CP3AT_PIG Cytochrome P450 3A29 OS=Sus scrofa GN=CYP3A2...    32   1.5  
sp|P79102|CP3AS_BOVIN Cytochrome P450 3A28 OS=Bos taurus GN=CYP3...    31   2.0  
sp|O35728|CP4AE_MOUSE Cytochrome P450 4A14 OS=Mus musculus GN=Cy...    30   3.4  
sp|Q29496|CP3AO_SHEEP Cytochrome P450 3A24 OS=Ovis aries GN=CYP3...    30   3.4  
sp|P05183|CP3A2_RAT Cytochrome P450 3A2 OS=Rattus norvegicus GN=...    30   4.4  
sp|P70385|DHB3_MOUSE Testosterone 17-beta-dehydrogenase 3 OS=Mus...    29   7.5  
sp|O09158|CP3AP_MOUSE Cytochrome P450 3A25 OS=Mus musculus GN=Cy...    29   7.5  
sp|Q64581|CP3AI_RAT Cytochrome P450 3A18 OS=Rattus norvegicus GN...    29   7.5  
sp|Q9HB55|CP343_HUMAN Cytochrome P450 3A43 OS=Homo sapiens GN=CY...    29   7.5  
sp|A2A891|CMTA1_MOUSE Calmodulin-binding transcription activator...    29   9.6  

>sp|P79401|CP3AT_PIG Cytochrome P450 3A29 OS=Sus scrofa GN=CYP3A29
           PE=2 SV=1
          Length = 503

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = -1

Query: 262 FLMTLVLFPFKSPIFYLLKVMILNNTLVHF 173
           FL++L+ FPF +PIF +L + +   + V+F
Sbjct: 219 FLLSLIFFPFLTPIFEVLNITLFPKSSVNF 248


>sp|P79102|CP3AS_BOVIN Cytochrome P450 3A28 OS=Bos taurus GN=CYP3A28
           PE=2 SV=1
          Length = 507

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = -1

Query: 262 FLMTLVLFPFKSPIFYLLKVMILNNTLVHF 173
           F+++++LFPF +P+F +L + +   + V F
Sbjct: 219 FILSIILFPFLNPVFEILNITLFPKSTVDF 248


>sp|O35728|CP4AE_MOUSE Cytochrome P450 4A14 OS=Mus musculus
           GN=Cyp4a14 PE=2 SV=1
          Length = 507

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = -1

Query: 262 FLMTLVLFPFKSPIFYLLKVMILNNTLVHFSCFP 161
           FL++L L  FK+  FYL +  +L  TL HF C P
Sbjct: 23  FLLSLFLVLFKAVQFYLRRQWLL-KTLQHFPCMP 55


>sp|Q29496|CP3AO_SHEEP Cytochrome P450 3A24 OS=Ovis aries GN=CYP3A24
           PE=2 SV=1
          Length = 503

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -1

Query: 262 FLMTLVLFPFKSPIFYLLKVMILNNTLVHF 173
           FL+++VLFPF  PIF +L + +   + V F
Sbjct: 219 FLLSVVLFPFLVPIFEVLNITMFPKSAVDF 248


>sp|P05183|CP3A2_RAT Cytochrome P450 3A2 OS=Rattus norvegicus
           GN=Cyp3a2 PE=1 SV=2
          Length = 504

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
 Frame = -1

Query: 277 PLFLYFLMTLVLFPFKSPIFYLLKV-MILNNTLVHFSCFPDPI-DTRPDT*GLCVLGYLP 104
           PLFL    ++VLFPF +PI+ +L + M   +++  F  F   I +TR D+     + +L 
Sbjct: 218 PLFL----SVVLFPFLTPIYEMLNICMFPKDSIAFFQKFVHRIKETRLDSKHKHRVDFLQ 273

Query: 103 MPLAAH 86
           + L AH
Sbjct: 274 LMLNAH 279


>sp|P70385|DHB3_MOUSE Testosterone 17-beta-dehydrogenase 3 OS=Mus
           musculus GN=Hsd17b3 PE=2 SV=1
          Length = 305

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +1

Query: 286 LMECYGIGEHLACFHWKVAPSSWLPNILLAGWQLIFGASENVLDTYAF 429
           L++C    +HL     K  PSS+L +  +  W +I GA + +   Y+F
Sbjct: 17  LVKCMRFSQHLFLRFCKALPSSFLRS--MGQWAVITGAGDGIGKAYSF 62


>sp|O09158|CP3AP_MOUSE Cytochrome P450 3A25 OS=Mus musculus
           GN=Cyp3a25 PE=2 SV=1
          Length = 503

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = -1

Query: 274 LFLYFLMTLVLFPFKSPIFYLLKVMILNNTLVHF 173
           +F  FL++++LFPF +PI+ +L   I     ++F
Sbjct: 215 IFDPFLLSIILFPFLTPIYEMLNFSIFPRDSMNF 248


>sp|Q64581|CP3AI_RAT Cytochrome P450 3A18 OS=Rattus norvegicus
           GN=Cyp3a18 PE=2 SV=1
          Length = 497

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = -1

Query: 274 LFLYFLMTLVLFPFKSPIFYLLKVMILNNTLVHF 173
           +F  FL+++VLFPF +PI+ +L   I     ++F
Sbjct: 215 IFDPFLLSVVLFPFLTPIYEMLNFSIFPRQSMNF 248


>sp|Q9HB55|CP343_HUMAN Cytochrome P450 3A43 OS=Homo sapiens
           GN=CYP3A43 PE=1 SV=1
          Length = 503

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 262 FLMTLVLFPFKSPIFYLLKVMILNNTLVHF 173
           FL+ + LFPF +P+F  L + +    + HF
Sbjct: 219 FLLLISLFPFLTPVFEALNIGLFPKDVTHF 248


>sp|A2A891|CMTA1_MOUSE Calmodulin-binding transcription activator 1
           OS=Mus musculus GN=Camta1 PE=2 SV=1
          Length = 1682

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 114 PRTHSPHVSGLVSIGSGKHEKCTNVLFKIIT 206
           PRTH+   +G +  GS  H KC +   +II+
Sbjct: 257 PRTHNCLCTGSLGAGSSVHHKCNSAKHRIIS 287
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914563|Adiantum capillus-veneris mRNA, clone:
YMU001_000060_D01.
         (436 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******