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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914565
Clone id YMU001_000060_D04
Library
Length 330
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000060_D04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AAGCTGGAAGAATTCGCGGCCGTGAAATGTTTGCACGCCTTCCTCTGTATCTAAGGCATG
ATCCTTAACCTTTCTGGACACATATTGCTCTTCTGCAAGCACTTTCCCAGACATTTTTTC
CCTCATTAAGCCATGGACCTTACCAAACTTCTCCGCAGCCTCCTTTGCTGACCCTTTGCA
TAGAGAGGCAAACACCATGCATGTACGCAAAAAATGCCCGAGACCACACACTGTCTTTCT
CCAGCTCCTCCCAGCACTTTCGTGCATCCTCCCATTCAAGCTGTAGCATATAGCTTACAC
CTAATTCATACACCCAAGCATGACGTAACT
■■Homology search results ■■ -
sp_hit_id Q1LXE6
Definition sp|Q1LXE6|TT39C_DANRE Tetratricopeptide repeat protein 39C OS=Danio rerio
Align length 47
Score (bit) 48.9
E-value 8.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914565|Adiantum capillus-veneris mRNA, clone:
YMU001_000060_D04.
         (308 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q1LXE6|TT39C_DANRE Tetratricopeptide repeat protein 39C OS=Da...    49   8e-06
sp|Q0VGK2|TT39C_RAT Tetratricopeptide repeat protein 39C OS=Ratt...    45   1e-04
sp|Q8VE09|TT39C_MOUSE Tetratricopeptide repeat protein 39C OS=Mu...    45   1e-04
sp|Q8N584|TT39C_HUMAN Tetratricopeptide repeat protein 39C OS=Ho...    45   1e-04
sp|Q8JZN7|MIRO2_MOUSE Mitochondrial Rho GTPase 2 OS=Mus musculus...    32   0.76 
sp|Q5XHH9|TT39B_XENLA Tetratricopeptide repeat protein 39B OS=Xe...    32   0.99 
sp|B0R0W9|TBC8B_DANRE TBC1 domain family member 8B OS=Danio reri...    31   1.7  
sp|Q28DB0|TT39B_XENTR Tetratricopeptide repeat protein 39B OS=Xe...    30   2.9  
sp|Q0II65|CCD70_BOVIN Coiled-coil domain-containing protein 70 O...    30   2.9  
sp|Q4AAS1|SYI_MYCHJ Isoleucyl-tRNA synthetase OS=Mycoplasma hyop...    30   4.9  
sp|P20126|POLR_EPMV RNA replicase polyprotein OS=Eggplant mosaic...    30   4.9  
sp|Q5L722|FMT_CHLAB Methionyl-tRNA formyltransferase OS=Chlamydo...    30   4.9  
sp|O19131|TNR1A_BOVIN Tumor necrosis factor receptor superfamily...    29   6.4  
sp|A2ACP1|TT39A_MOUSE Tetratricopeptide repeat protein 39A OS=Mu...    29   8.4  
sp|A1A5Y5|TT39A_DANRE Tetratricopeptide repeat protein 39A OS=Da...    29   8.4  
sp|Q8L785|SYGM2_ARATH Glycyl-tRNA synthetase 2, chloroplastic/mi...    29   8.4  
sp|P50889|RS1_LEULA 40S ribosomal protein S1 OS=Leuconostoc lact...    29   8.4  
sp|B3PLH7|MLTF_CELJU Membrane-bound lytic murein transglycosylas...    29   8.4  
sp|Q68F67|DEN1A_XENLA DENN domain-containing protein 1A OS=Xenop...    29   8.4  

>sp|Q1LXE6|TT39C_DANRE Tetratricopeptide repeat protein 39C OS=Danio
           rerio GN=ttc39c PE=2 SV=1
          Length = 579

 Score = 48.9 bits (115), Expect = 8e-06
 Identities = 18/47 (38%), Positives = 34/47 (72%)
 Frame = -3

Query: 306 LRHAWVYELGVSYMLQLEWEDARKCWEELEKDSVWSRAFFAYMHGVC 166
           ++H  +YE+G   M+++ +EDA + +E L+ +S WS+ ++AY+ GVC
Sbjct: 347 IQHVCLYEIGWCSMIEMSFEDAFRSFERLKNESRWSQCYYAYLTGVC 393


>sp|Q0VGK2|TT39C_RAT Tetratricopeptide repeat protein 39C OS=Rattus
           norvegicus GN=Ttc39c PE=2 SV=1
          Length = 522

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 17/47 (36%), Positives = 32/47 (68%)
 Frame = -3

Query: 306 LRHAWVYELGVSYMLQLEWEDARKCWEELEKDSVWSRAFFAYMHGVC 166
           ++H  +YE+G   M++L ++DA   +E L+ +S WS+ ++AY+  VC
Sbjct: 290 IQHVCLYEIGWCSMIELNFKDAFDSFERLKNESRWSQCYYAYLTAVC 336


>sp|Q8VE09|TT39C_MOUSE Tetratricopeptide repeat protein 39C OS=Mus
           musculus GN=Ttc39c PE=2 SV=2
          Length = 580

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 17/47 (36%), Positives = 32/47 (68%)
 Frame = -3

Query: 306 LRHAWVYELGVSYMLQLEWEDARKCWEELEKDSVWSRAFFAYMHGVC 166
           ++H  +YE+G   M++L ++DA   +E L+ +S WS+ ++AY+  VC
Sbjct: 348 IQHVCLYEIGWCSMIELNFKDAFDSFERLKNESRWSQCYYAYLTAVC 394


>sp|Q8N584|TT39C_HUMAN Tetratricopeptide repeat protein 39C OS=Homo
           sapiens GN=TTC39C PE=2 SV=2
          Length = 583

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 17/47 (36%), Positives = 32/47 (68%)
 Frame = -3

Query: 306 LRHAWVYELGVSYMLQLEWEDARKCWEELEKDSVWSRAFFAYMHGVC 166
           ++H  +YE+G   M++L ++DA   +E L+ +S WS+ ++AY+  VC
Sbjct: 351 IQHVCLYEIGWCSMIELNFKDAFDSFERLKNESRWSQCYYAYLTAVC 397


>sp|Q8JZN7|MIRO2_MOUSE Mitochondrial Rho GTPase 2 OS=Mus musculus
           GN=Rhot2 PE=2 SV=1
          Length = 620

 Score = 32.3 bits (72), Expect = 0.76
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +3

Query: 195 PETTHCLSPAPPSTFVHPPIQAVAYSLHLIHTPKH 299
           P +  CL PA PST V   +  +A   HL+HT  H
Sbjct: 553 PASFSCLGPAMPSTDVFTQLATMATFPHLVHTELH 587


>sp|Q5XHH9|TT39B_XENLA Tetratricopeptide repeat protein 39B
           OS=Xenopus laevis GN=ttc39b PE=2 SV=1
          Length = 586

 Score = 32.0 bits (71), Expect = 0.99
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -3

Query: 306 LRHAWVYELGVSYMLQLEWEDARKCWEELEKDSVWSRAFFAYMHGVCLSM 157
           + H   +EL   +  Q +W  A +  + L K+S WS+A + +     LSM
Sbjct: 328 IHHLCYWELMWCHSFQQDWLQAYRYADLLSKESKWSKATYVFQKAALLSM 377


>sp|B0R0W9|TBC8B_DANRE TBC1 domain family member 8B OS=Danio rerio
           GN=tbc1d8b PE=4 SV=1
          Length = 1108

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 40  SLTFLDTYCSSASTFPDIFSLIKPWTLPNFSAASFADPLH 159
           SL +LD Y    S F  +F+L++PWT    S +      H
Sbjct: 793 SLPYLDQYQLDQSQFSSLFNLLQPWTTHTHSRSLARSAFH 832


>sp|Q28DB0|TT39B_XENTR Tetratricopeptide repeat protein 39B
           OS=Xenopus tropicalis GN=ttc39b PE=2 SV=1
          Length = 588

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -3

Query: 306 LRHAWVYELGVSYMLQLEWEDARKCWEELEKDSVWSRAFFAYMHGVCLSM 157
           + H   +EL   +  Q +W  A +  + L K+S WS+A + +     LSM
Sbjct: 330 IHHLCYWELMWCHSFQQDWLQAYRYADLLCKESKWSKATYVFQKAAILSM 379


>sp|Q0II65|CCD70_BOVIN Coiled-coil domain-containing protein 70
           OS=Bos taurus GN=CCDC70 PE=2 SV=1
          Length = 222

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = -3

Query: 294 WVYELGVSYMLQLEWEDARKCWEELEKDSVWSRAFFAYMHGVC-LSMQRVSKGG 136
           WV E  +    ++ WED +  WE  E++++W     A++ GV  +  Q+V +GG
Sbjct: 153 WVEERALLEEEKVLWEDKKTLWE--EENALWEEEKAAWVEGVVPVVEQQVLEGG 204


>sp|Q4AAS1|SYI_MYCHJ Isoleucyl-tRNA synthetase OS=Mycoplasma
           hyopneumoniae (strain J / ATCC 25934 / NCTC 10110)
           GN=ileS PE=3 SV=2
          Length = 886

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -3

Query: 279 GVSYMLQLEWEDARKCWEELEK-DSVWSRAF 190
           G + +LQL WE   +CW   EK + V +R F
Sbjct: 844 GKTEILQLNWEKCPRCWNHFEKINKVCARCF 874
tr_hit_id A9SKG8
Definition tr|A9SKG8|A9SKG8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 50
Score (bit) 94.7
E-value 4.0e-27
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914565|Adiantum capillus-veneris mRNA, clone:
YMU001_000060_D04.
         (308 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SKG8|A9SKG8_PHYPA Predicted protein OS=Physcomitrella paten...    95   4e-27
tr|Q4RVG7|Q4RVG7_TETNG Chromosome 15 SCAF14992, whole genome sho...    47   5e-04
tr|A7SJ47|A7SJ47_NEMVE Predicted protein OS=Nematostella vectens...    47   6e-04
tr|A9JRJ7|A9JRJ7_XENTR LOC100135082 protein OS=Xenopus tropicali...    45   0.002
tr|B7Z3X0|B7Z3X0_HUMAN cDNA FLJ51224 OS=Homo sapiens PE=2 SV=1         45   0.002
tr|Q582Z1|Q582Z1_9TRYP Putative uncharacterized protein OS=Trypa...    42   0.012
tr|Q4T976|Q4T976_TETNG Chromosome undetermined SCAF7631, whole g...    42   0.015
tr|Q5KMB8|Q5KMB8_CRYNE Putative uncharacterized protein OS=Crypt...    39   0.030
tr|A4I9W2|A4I9W2_LEIIN Putative uncharacterized protein OS=Leish...    41   0.034
tr|A4H7S4|A4H7S4_LEIBR Hypthetical protein, conserved OS=Leishma...    40   0.045
tr|Q4DAF1|Q4DAF1_TRYCR Putative uncharacterized protein OS=Trypa...    40   0.059
tr|B6P1C8|B6P1C8_BRAFL Putative uncharacterized protein OS=Branc...    40   0.077
tr|B6LVL3|B6LVL3_BRAFL Putative uncharacterized protein OS=Branc...    40   0.077
tr|Q4DD05|Q4DD05_TRYCR Putative uncharacterized protein OS=Trypa...    39   0.17 
tr|A8NKZ4|A8NKZ4_COPC7 Putative uncharacterized protein OS=Copri...    39   0.17 
tr|B3S3R1|B3S3R1_TRIAD Putative uncharacterized protein (Fragmen...    37   0.38 
tr|B0DD63|B0DD63_LACBS Predicted protein OS=Laccaria bicolor (st...    37   0.38 
tr|Q4Q352|Q4Q352_LEIMA Putative uncharacterized protein OS=Leish...    37   0.50 
tr|Q4RJG6|Q4RJG6_TETNG Chromosome 18 SCAF15038, whole genome sho...    36   0.85 
tr|Q4P1H2|Q4P1H2_USTMA Putative uncharacterized protein OS=Ustil...    36   0.85 
tr|B0XFL4|B0XFL4_CULQU Putative uncharacterized protein OS=Culex...    36   1.1  
tr|B0WK60|B0WK60_CULQU Putative uncharacterized protein OS=Culex...    36   1.1  
tr|A9UVL3|A9UVL3_MONBE Predicted protein OS=Monosiga brevicollis...    35   1.4  
tr|Q4SWM8|Q4SWM8_TETNG Chromosome undetermined SCAF13606, whole ...    35   1.9  
tr|B3L0N4|B3L0N4_PLAKH Putative uncharacterized protein OS=Plasm...    34   4.2  
tr|B5D1P9|B5D1P9_9BACE Putative uncharacterized protein OS=Bacte...    33   5.5  
tr|B3S9Y3|B3S9Y3_TRIAD Putative uncharacterized protein OS=Trich...    33   5.5  
tr|Q2J5J2|Q2J5J2_FRASC Acyl-CoA dehydrogenase OS=Frankia sp. (st...    33   7.2  
tr|B1SB66|B1SB66_9BIFI Putative uncharacterized protein OS=Bifid...    33   9.4  
tr|Q69HT4|Q69HT4_CIOIN Putative uncharacterized protein (Fragmen...    33   9.4  

>tr|A9SKG8|A9SKG8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_165414 PE=4 SV=1
          Length = 601

 Score = 94.7 bits (234), Expect(2) = 4e-27
 Identities = 40/50 (80%), Positives = 47/50 (94%)
 Frame = -3

Query: 306 LRHAWVYELGVSYMLQLEWEDARKCWEELEKDSVWSRAFFAYMHGVCLSM 157
           LRHAWVYELG+S+MLQLEW+ A K WEELE+DSVWS+AFFAY+HGVCL+M
Sbjct: 320 LRHAWVYELGLSHMLQLEWQAAEKFWEELEQDSVWSKAFFAYLHGVCLAM 369



 Score = 50.1 bits (118), Expect(2) = 4e-27
 Identities = 24/36 (66%), Positives = 28/36 (77%)
 Frame = -1

Query: 152 GSAKEAAEKFGKVHGLMREKMSGKVLAEEQYVSRKV 45
           G  K AA +FGKVHGLMR  +SG+VLAEEQY  RK+
Sbjct: 371 GEPKAAALRFGKVHGLMRGTISGRVLAEEQYALRKM 406


>tr|Q4RVG7|Q4RVG7_TETNG Chromosome 15 SCAF14992, whole genome
           shotgun sequence. (Fragment) OS=Tetraodon nigroviridis
           GN=GSTENG00028342001 PE=4 SV=1
          Length = 656

 Score = 47.0 bits (110), Expect = 5e-04
 Identities = 17/47 (36%), Positives = 33/47 (70%)
 Frame = -3

Query: 306 LRHAWVYELGVSYMLQLEWEDARKCWEELEKDSVWSRAFFAYMHGVC 166
           ++H  +YE+G   M+ L++ +A + +E L ++S WS+ ++AY+ GVC
Sbjct: 416 IQHVCLYEIGWCSMIALDYREAFRAFERLRRESRWSQCYYAYLTGVC 462


>tr|A7SJ47|A7SJ47_NEMVE Predicted protein OS=Nematostella vectensis
           GN=v1g120193 PE=4 SV=1
          Length = 536

 Score = 46.6 bits (109), Expect = 6e-04
 Identities = 19/44 (43%), Positives = 31/44 (70%)
 Frame = -3

Query: 288 YELGVSYMLQLEWEDARKCWEELEKDSVWSRAFFAYMHGVCLSM 157
           YE+G  ++LQLEWE A   +  L++DS WS+ ++AY+ GV + +
Sbjct: 301 YEIGWCHLLQLEWEYALPAFFRLKEDSKWSQGYYAYLCGVTIGL 344


>tr|A9JRJ7|A9JRJ7_XENTR LOC100135082 protein OS=Xenopus tropicalis
           GN=LOC100135082 PE=2 SV=1
          Length = 570

 Score = 45.1 bits (105), Expect = 0.002
 Identities = 16/47 (34%), Positives = 33/47 (70%)
 Frame = -3

Query: 306 LRHAWVYELGVSYMLQLEWEDARKCWEELEKDSVWSRAFFAYMHGVC 166
           ++H  +YE+G   M+++ ++DA + +E L+ +S WS+ ++AY+  VC
Sbjct: 338 IQHVCLYEIGWCSMIEMNYKDAFQSFERLKNESRWSQCYYAYLTAVC 384


>tr|B7Z3X0|B7Z3X0_HUMAN cDNA FLJ51224 OS=Homo sapiens PE=2 SV=1
          Length = 276

 Score = 44.7 bits (104), Expect = 0.002
 Identities = 17/47 (36%), Positives = 32/47 (68%)
 Frame = -3

Query: 306 LRHAWVYELGVSYMLQLEWEDARKCWEELEKDSVWSRAFFAYMHGVC 166
           ++H  +YE+G   M++L ++DA   +E L+ +S WS+ ++AY+  VC
Sbjct: 44  IQHVCLYEIGWCSMIELNFKDAFDSFERLKNESRWSQCYYAYLTAVC 90


>tr|Q582Z1|Q582Z1_9TRYP Putative uncharacterized protein
           OS=Trypanosoma brucei GN=Tb04.4J6.350 PE=4 SV=1
          Length = 672

 Score = 42.4 bits (98), Expect = 0.012
 Identities = 15/50 (30%), Positives = 29/50 (58%)
 Frame = -3

Query: 306 LRHAWVYELGVSYMLQLEWEDARKCWEELEKDSVWSRAFFAYMHGVCLSM 157
           LR   +Y+ G ++++ ++W +A + ++ LE  S WS+ F+ Y    C  M
Sbjct: 359 LRDFAIYDQGWNFVITMQWREAIELYKRLEDHSAWSKLFYGYAQACCFDM 408


>tr|Q4T976|Q4T976_TETNG Chromosome undetermined SCAF7631, whole
           genome shotgun sequence OS=Tetraodon nigroviridis
           GN=GSTENG00004885001 PE=4 SV=1
          Length = 605

 Score = 42.0 bits (97), Expect = 0.015
 Identities = 17/42 (40%), Positives = 30/42 (71%)
 Frame = -3

Query: 291 VYELGVSYMLQLEWEDARKCWEELEKDSVWSRAFFAYMHGVC 166
           V+ LG   M++L +EDA + ++ L+ +S WS+ ++AY+ GVC
Sbjct: 378 VFLLGWCSMIELNFEDAYRSFKRLKDESRWSQCYYAYLTGVC 419


>tr|Q5KMB8|Q5KMB8_CRYNE Putative uncharacterized protein
           OS=Cryptococcus neoformans GN=CNB02240 PE=4 SV=1
          Length = 903

 Score = 39.3 bits (90), Expect(2) = 0.030
 Identities = 15/48 (31%), Positives = 28/48 (58%)
 Frame = -3

Query: 306 LRHAWVYELGVSYMLQLEWEDARKCWEELEKDSVWSRAFFAYMHGVCL 163
           L+H  +++   +YM+  +W+ A  C+  L+ +S WSRA + Y    C+
Sbjct: 608 LQHMCLWDYACNYMMLGKWKGALDCFSILKDESNWSRAVYTYAAAACI 655



 Score = 21.2 bits (43), Expect(2) = 0.030
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -1

Query: 104 MREKMSGKVLAEEQYVSRKVK 42
           + +K++GK L  E++ SRK +
Sbjct: 681 LTKKIAGKSLPIEKFASRKAR 701


>tr|A4I9W2|A4I9W2_LEIIN Putative uncharacterized protein
           OS=Leishmania infantum GN=LinJ34.1440 PE=4 SV=1
          Length = 803

 Score = 40.8 bits (94), Expect = 0.034
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = -3

Query: 306 LRHAWVYELGVSYMLQLEWEDARKCWEELEKDSVWSRAFFAYMHGVCLSM 157
           LR   +Y+  V+Y +  +W+ A +C E L K S W+ A + Y    CL M
Sbjct: 420 LRDLVLYDQWVNYAIVHQWKRASRCLEILSKTSKWANAVYQYTQACCLEM 469


>tr|A4H7S4|A4H7S4_LEIBR Hypthetical protein, conserved OS=Leishmania
           braziliensis GN=LbrM14_V2.1210 PE=4 SV=1
          Length = 805

 Score = 40.4 bits (93), Expect = 0.045
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = -3

Query: 306 LRHAWVYELGVSYMLQLEWEDARKCWEELEKDSVWSRAFFAYMHGVCLSMQRV 148
           LR   +Y+   +Y +  +W+ A +C E L K S W+ A + Y+   CL M  +
Sbjct: 420 LRDFVLYDQWFNYAIMNQWKRASRCLELLSKTSKWANAVYQYVQACCLEMLEI 472