BP914576
Clone id YMU001_000060_E09
Library
Length 395
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000060_E09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CCACCTTCCTCACAGTGCGACCAAGTTGCTCATCTAGCTTGCGGATAATTCAGCTGACAT
ATCGATTAGTAATTGGCTAGGAAGCGAGTTTGACTCACATTGCCGACTTGGCGTTTTGTT
GGCGCAAGGTCATTCCTGAAAATGGGGCCCATTGTTACACTGCAAGACGGGAATGCCTAT
CTAGTACCTATATGTATTCTACAAAGGTAGTGAGAGTGCCCTTTACACGTGTCGAGAGTT
GTAAGTTGAAGGCTACAATCCAAAAGTCCTCTGGGCACGATAAAAAGAGAGAGAGAAAGA
GAGAGAAAGAGGCCGCCCGGCCTAACTGGTCCCATTTACGACATGTTGAGCGAAAGCAGT
CAGGACTTGCTTTCCAACTTGGAGGATTCTTGAGC
■■Homology search results ■■ -
sp_hit_id Q80TE0
Definition sp|Q80TE0|RPAP1_MOUSE RNA polymerase II-associated protein 1 OS=Mus musculus
Align length 41
Score (bit) 25.4
E-value 1.5
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914576|Adiantum capillus-veneris mRNA, clone:
YMU001_000060_E09.
(395 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q80TE0|RPAP1_MOUSE RNA polymerase II-associated protein 1 OS=... 25 1.5

>sp|Q80TE0|RPAP1_MOUSE RNA polymerase II-associated protein 1 OS=Mus
musculus GN=Rpap1 PE=1 SV=2
Length = 1409

Score = 25.4 bits (54), Expect(2) = 1.5
Identities = 17/41 (41%), Positives = 19/41 (46%)
Frame = +2

Query: 5 LPHSATKLLI*LADNSADISISNWLGSEFDSHCRLGVLLAQ 127
LP SA+ +AD S LGS D CR G LL Q
Sbjct: 1028 LPESASG-----GPEAADFSDGLSLGSSGDPQCRRGALLVQ 1063



Score = 24.6 bits (52), Expect(2) = 1.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3

Query: 147 AHCYTARRECLSSTYMYSTKVVRV 218
AHC AR LSS +Y +++RV
Sbjct: 1077 AHCSPARASLLSSQALYCGELLRV 1100


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914576|Adiantum capillus-veneris mRNA, clone:
YMU001_000060_E09.
(395 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******