BP914578
Clone id YMU001_000060_E11
Library
Length 539
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000060_E11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CCTTAAGCTAGAAAAGGAGCTGCGTTTATGAATGTGCATGAGCTGGTTTTTTTGAGTTCC
TTTTGAGTGCGTCAAATGATAATGAGAAATGGACGTTCTGTTGGCATGGTGAAACTCCTG
ATTTAGTCTGCAAGTCATTTGAGGGTTTAAGCTGTGTTCCAGGTTTGCACCATTCCGAAA
CAACTCAGTGGACAGGTGGCAGCGGAAGACACAATTGTCAACAGGAGCCGCTGCATCAAA
AAGCAAGCTTAGAGCATTCAATCAAGTTTGTGTTACTGCAGTCATTCATCTTGCATGAAC
GTTATATTATGGAGTGTTTTTCCACAGAGTCCTGCATTGTTTCACTTGAGCTATCACTTA
GTGTCAGTCTTGTTATGAGACATAATGGCAAGGGCTAGTTTTAGAAGTTCTGAATGCCGG
CGTTCTATTCAAGGATTTTTTTTTGAAAGCGGGCAGTCAAGGGTGAAGTTAAGTGAAGGT
GTAAGCATGCCTAGAGGTTGATGTTCAAGATAAGTGGCCTAGTTGTATTGTAGTCATTT
■■Homology search results ■■ -
sp_hit_id Q1HE26
Definition sp|Q1HE26|SMAD4_BOVIN Mothers against decapentaplegic homolog 4 OS=Bos taurus
Align length 30
Score (bit) 32.0
E-value 2.0
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914578|Adiantum capillus-veneris mRNA, clone:
YMU001_000060_E11.
(539 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q1HE26|SMAD4_BOVIN Mothers against decapentaplegic homolog 4 ... 32 2.0
sp|P52715|YUA6_CAEEL Uncharacterized serine carboxypeptidase F13... 31 4.4
sp|O83880|Y910_TREPA Uncharacterized protein TP_0910 OS=Treponem... 30 7.5
sp|Q5R537|THRB_PONAB Prothrombin OS=Pongo abelii GN=F2 PE=2 SV=1 30 7.5
sp|P00734|THRB_HUMAN Prothrombin OS=Homo sapiens GN=F2 PE=1 SV=2 30 7.5
sp|A2A5Z6|SMUF2_MOUSE E3 ubiquitin-protein ligase SMURF2 OS=Mus ... 30 9.8
sp|O70437|SMAD4_RAT Mothers against decapentaplegic homolog 4 OS... 30 9.8
sp|P97471|SMAD4_MOUSE Mothers against decapentaplegic homolog 4 ... 30 9.8
sp|Q13485|SMAD4_HUMAN Mothers against decapentaplegic homolog 4 ... 30 9.8

>sp|Q1HE26|SMAD4_BOVIN Mothers against decapentaplegic homolog 4
OS=Bos taurus GN=SMAD4 PE=2 SV=1
Length = 553

Score = 32.0 bits (71), Expect = 2.0
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +3

Query: 168 HHSETTQWTGGSGRHNCQQEPLHQKASLEH 257
HH+ TT WTGG P HQ L+H
Sbjct: 261 HHNSTTTWTGGRTAPYTPNLPHHQNGHLQH 290


>sp|P52715|YUA6_CAEEL Uncharacterized serine carboxypeptidase
F13S12.6 OS=Caenorhabditis elegans GN=F13D12.6 PE=2 SV=1
Length = 454

Score = 30.8 bits (68), Expect = 4.4
Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 5/92 (5%)
Frame = +3

Query: 78 DNEKW----TFCWHGETPDLVCKSFEGLS-CVPGLHHSETTQWTGGSGRHNCQQEPLHQK 242
D KW T C H +T SF S C + ++ T W GG +N + +
Sbjct: 222 DQAKWEHMKTSCCHNDTDACPWHSFSEFSACGEFVEATQQTAWNGGLNPYNMYADCISTS 281

Query: 243 ASLEHSIKFVLLQSFILHERYIMECFSTESCI 338
AS +++ +++Y E T C+
Sbjct: 282 ASFRFGMEY----ERRFNKKYTPEVLGTVPCL 309


>sp|O83880|Y910_TREPA Uncharacterized protein TP_0910 OS=Treponema
pallidum GN=TP_0910 PE=4 SV=1
Length = 306

Score = 30.0 bits (66), Expect = 7.5
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Frame = -3

Query: 249 SLLFDAAAPVDNCVFRCHLSTELFRNGANLEHSLNPQMTCRLNQEFHHANRTSISHYHL- 73
S+L D PVD + R LST L +GA + + +N +H A + +
Sbjct: 145 SILGDRNIPVDAAMLRRMLSTFLGESGAYTDSDTERDLFALVNHTYHSALHWLLVPFERR 204

Query: 72 ---THSKGTQKNQLMHIHKRS 19
T +GT + L+H+HK++
Sbjct: 205 GAHTVWRGT-LSLLLHLHKKT 224


>sp|Q5R537|THRB_PONAB Prothrombin OS=Pongo abelii GN=F2 PE=2 SV=1
Length = 623

Score = 30.0 bits (66), Expect = 7.5
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +3

Query: 192 TGGSGRHNCQQEPLHQKASLEHSIKFVLLQSFI 290
T GSG +C PL +K SLE + LL+S+I
Sbjct: 329 TFGSGEADCGLRPLFEKKSLEDKTERELLESYI 361


>sp|P00734|THRB_HUMAN Prothrombin OS=Homo sapiens GN=F2 PE=1 SV=2
Length = 622

Score = 30.0 bits (66), Expect = 7.5
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +3

Query: 192 TGGSGRHNCQQEPLHQKASLEHSIKFVLLQSFI 290
T GSG +C PL +K SLE + LL+S+I
Sbjct: 328 TFGSGEADCGLRPLFEKKSLEDKTERELLESYI 360


>sp|A2A5Z6|SMUF2_MOUSE E3 ubiquitin-protein ligase SMURF2 OS=Mus
musculus GN=Smurf2 PE=2 SV=1
Length = 748

Score = 29.6 bits (65), Expect = 9.8
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Frame = -3

Query: 174 NGANLEHSLNPQMTCRLNQEFHHANRTSISHYHLT-------HSKGTQKNQLMHIHKRSS 16
NGA HS +P++ R + H N S +H H + TQ+ Q+ +H ++
Sbjct: 216 NGATCGHSSDPRLAERRVRSQRHRNYMSRTHLHTPPDLPEGYEQRTTQQGQVYFLHTQTG 275

Query: 15 FSS 7
S+
Sbjct: 276 VST 278


>sp|O70437|SMAD4_RAT Mothers against decapentaplegic homolog 4
OS=Rattus norvegicus GN=Smad4 PE=2 SV=1
Length = 552

Score = 29.6 bits (65), Expect = 9.8
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +3

Query: 168 HHSETTQWTGGSGRHNCQQEPLHQKASLEH 257
HH+ TT WTG P HQ L+H
Sbjct: 261 HHNSTTTWTGSRTAPYTPNLPHHQNGHLQH 290


>sp|P97471|SMAD4_MOUSE Mothers against decapentaplegic homolog 4
OS=Mus musculus GN=Smad4 PE=2 SV=1
Length = 551

Score = 29.6 bits (65), Expect = 9.8
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +3

Query: 168 HHSETTQWTGGSGRHNCQQEPLHQKASLEH 257
HH+ TT WTG P HQ L+H
Sbjct: 260 HHNSTTTWTGSRTAPYTPNLPHHQNGHLQH 289


>sp|Q13485|SMAD4_HUMAN Mothers against decapentaplegic homolog 4
OS=Homo sapiens GN=SMAD4 PE=1 SV=1
Length = 552

Score = 29.6 bits (65), Expect = 9.8
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +3

Query: 168 HHSETTQWTGGSGRHNCQQEPLHQKASLEH 257
HH+ TT WTG P HQ L+H
Sbjct: 261 HHNSTTTWTGSRTAPYTPNLPHHQNGHLQH 290


tr_hit_id A7PKD6
Definition tr|A7PKD6|A7PKD6_VITVI Chromosome chr15 scaffold_19, whole genome shotgun sequence OS=Vitis vinifera
Align length 40
Score (bit) 62.0
E-value 2.0e-08
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914578|Adiantum capillus-veneris mRNA, clone:
YMU001_000060_E11.
(539 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A7PKD6|A7PKD6_VITVI Chromosome chr15 scaffold_19, whole genom... 62 2e-08
tr|Q8L4B1|Q8L4B1_ORYSJ cDNA clone:001-115-F02, full insert seque... 59 2e-07
tr|B8A9B7|B8A9B7_ORYSI Putative uncharacterized protein OS=Oryza... 59 2e-07
tr|A2ZTX0|A2ZTX0_ORYSJ Putative uncharacterized protein OS=Oryza... 59 2e-07
tr|A9T926|A9T926_PHYPA Predicted protein OS=Physcomitrella paten... 57 8e-07
tr|Q9FLK0|Q9FLK0_ARATH Similarity to apoptosis antagonizing tran... 54 4e-06
tr|Q84W09|Q84W09_ARATH At5g61330 OS=Arabidopsis thaliana PE=2 SV=1 54 4e-06
tr|B6TMZ1|B6TMZ1_MAIZE Protein AATF OS=Zea mays PE=2 SV=1 50 6e-05
tr|Q00UT0|Q00UT0_OSTTA Putative apoptosis antagonizing transcrip... 40 0.078
tr|A8HUN7|A8HUN7_CHLRE Transcription factor (Fragment) OS=Chlamy... 34 4.3
tr|B4NEF6|B4NEF6_DROWI GK25297 OS=Drosophila willistoni GN=GK252... 33 7.3

>tr|A7PKD6|A7PKD6_VITVI Chromosome chr15 scaffold_19, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00019119001
PE=4 SV=1
Length = 330

Score = 62.0 bits (149), Expect = 2e-08
Identities = 27/40 (67%), Positives = 35/40 (87%)
Frame = +2

Query: 146 FKLCSRFAPFRNNSVDRWQRKTQLSTGAAASKSKLRAFNQ 265
+++ SR APFR+ S+D+WQRKT++STGAAA K KLRAFNQ
Sbjct: 144 YQMHSRIAPFRDKSIDKWQRKTEVSTGAAAIKGKLRAFNQ 183


>tr|Q8L4B1|Q8L4B1_ORYSJ cDNA clone:001-115-F02, full insert sequence
OS=Oryza sativa subsp. japonica GN=B1147B04.18 PE=2 SV=1
Length = 419

Score = 58.9 bits (141), Expect = 2e-07
Identities = 26/39 (66%), Positives = 31/39 (79%)
Frame = +2

Query: 149 KLCSRFAPFRNNSVDRWQRKTQLSTGAAASKSKLRAFNQ 265
KL R PFRN+ +D+WQRKTQ++TGAAA K KL AFNQ
Sbjct: 237 KLQKRITPFRNSEIDKWQRKTQVTTGAAALKGKLHAFNQ 275


>tr|B8A9B7|B8A9B7_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_02244 PE=4 SV=1
Length = 420

Score = 58.9 bits (141), Expect = 2e-07
Identities = 26/39 (66%), Positives = 31/39 (79%)
Frame = +2

Query: 149 KLCSRFAPFRNNSVDRWQRKTQLSTGAAASKSKLRAFNQ 265
KL R PFRN+ +D+WQRKTQ++TGAAA K KL AFNQ
Sbjct: 238 KLQKRITPFRNSEIDKWQRKTQVTTGAAALKGKLHAFNQ 276


>tr|A2ZTX0|A2ZTX0_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_001992 PE=4 SV=1
Length = 394

Score = 58.9 bits (141), Expect = 2e-07
Identities = 26/39 (66%), Positives = 31/39 (79%)
Frame = +2

Query: 149 KLCSRFAPFRNNSVDRWQRKTQLSTGAAASKSKLRAFNQ 265
KL R PFRN+ +D+WQRKTQ++TGAAA K KL AFNQ
Sbjct: 212 KLQKRITPFRNSEIDKWQRKTQVTTGAAALKGKLHAFNQ 250


>tr|A9T926|A9T926_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_89684 PE=4 SV=1
Length = 494

Score = 56.6 bits (135), Expect = 8e-07
Identities = 25/36 (69%), Positives = 30/36 (83%)
Frame = +2

Query: 158 SRFAPFRNNSVDRWQRKTQLSTGAAASKSKLRAFNQ 265
S P+RN+SVDRWQRKTQL+TGAAA K + +AFNQ
Sbjct: 317 SSITPYRNSSVDRWQRKTQLATGAAAVKGRFQAFNQ 352


>tr|Q9FLK0|Q9FLK0_ARATH Similarity to apoptosis antagonizing
transcription factor (Putative uncharacterized protein
At5g61330) OS=Arabidopsis thaliana GN=At5g61330 PE=2
SV=1
Length = 436

Score = 54.3 bits (129), Expect = 4e-06
Identities = 25/38 (65%), Positives = 30/38 (78%)
Frame = +2

Query: 152 LCSRFAPFRNNSVDRWQRKTQLSTGAAASKSKLRAFNQ 265
L R + FRN +VD+WQRKTQ++TGAAA K KL AFNQ
Sbjct: 253 LQKRMSVFRNKAVDKWQRKTQVTTGAAAIKGKLHAFNQ 290


>tr|Q84W09|Q84W09_ARATH At5g61330 OS=Arabidopsis thaliana PE=2 SV=1
Length = 436

Score = 54.3 bits (129), Expect = 4e-06
Identities = 25/38 (65%), Positives = 30/38 (78%)
Frame = +2

Query: 152 LCSRFAPFRNNSVDRWQRKTQLSTGAAASKSKLRAFNQ 265
L R + FRN +VD+WQRKTQ++TGAAA K KL AFNQ
Sbjct: 253 LQKRMSVFRNKAVDKWQRKTQVTTGAAAIKGKLHAFNQ 290


>tr|B6TMZ1|B6TMZ1_MAIZE Protein AATF OS=Zea mays PE=2 SV=1
Length = 289

Score = 50.4 bits (119), Expect = 6e-05
Identities = 22/39 (56%), Positives = 28/39 (71%)
Frame = +2

Query: 149 KLCSRFAPFRNNSVDRWQRKTQLSTGAAASKSKLRAFNQ 265
+L +R FRN +D+W RK Q++TGAAA K KL AFNQ
Sbjct: 113 RLQARITTFRNTEIDKWHRKIQVTTGAAALKGKLHAFNQ 151


>tr|Q00UT0|Q00UT0_OSTTA Putative apoptosis antagonizing
transcription factor [Oryza sativa (ISS) (Fragment)
OS=Ostreococcus tauri GN=Ot15g02780 PE=4 SV=1
Length = 369

Score = 40.0 bits (92), Expect = 0.078
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +2

Query: 164 FAPFRNNSVDRWQRKTQLSTGAAASKSKLRAFNQ 265
FA +R+++ DRW RK+ +S G +S L+AFNQ
Sbjct: 190 FASYRDSTCDRWHRKSTVSVGGTSSGGSLKAFNQ 223


>tr|A8HUN7|A8HUN7_CHLRE Transcription factor (Fragment)
OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_143724 PE=4
SV=1
Length = 495

Score = 34.3 bits (77), Expect = 4.3
Identities = 15/33 (45%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Frame = +2

Query: 170 PFRNNSVDRWQRKTQLSTGAAASKSK-LRAFNQ 265
P+R+ ++D W R+T LS+G+ A ++ LRA NQ
Sbjct: 291 PYRDTALDSWHRRTVLSSGSGAMRNAGLRALNQ 323