NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914582
Clone id YMU001_000060_F04
Library
Length 382
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000060_F04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTTTTTTTTTTGGGTAAAATTTAGTCTTCAAAAGCACAGAAATTAGACATACCATTTTGC
CTTGAAAAGTTGAAGAATAACTGTCCTGAGTCAATATGTGTCTACCATAATTAGCTTCAA
TGGGAAGACCACTATTAAGACAAGCTCAACACAAGAAAATCCTTCCTCTTACCTGACACA
TAATTCACTTCCATCCCTAGTGCTTAAGTTGCCCTTGTTCTCTTCTGCCCCACCGCTGCT
GTGGGAGGTCCTTTCTCCTTCATATCTGTGTCCNATGTTGGGTACGTTGGAATTTTCGCC
ATCCATGAGAGGTTACAAATGATGACGACAAGTCCGTGTAAAGGCCTACCACCTGATTCA
TGTAGTTGTTGAGCTCCTTAAT
■■Homology search results ■■ -
sp_hit_id P90789
Definition sp|P90789|NDUB7_CAEEL NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 OS=Caenorhabditis elegans
Align length 27
Score (bit) 30.8
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914582|Adiantum capillus-veneris mRNA, clone:
YMU001_000060_F04.
         (371 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P90789|NDUB7_CAEEL NADH dehydrogenase [ubiquinone] 1 beta sub...    31   2.2  
sp|Q5T0W9|FA83B_HUMAN Protein FAM83B OS=Homo sapiens GN=FAM83B P...    30   2.9  
sp|Q10231|ERG7_SCHPO Lanosterol synthase OS=Schizosaccharomyces ...    29   6.4  

>sp|P90789|NDUB7_CAEEL NADH dehydrogenase [ubiquinone] 1 beta
           subcomplex subunit 7 OS=Caenorhabditis elegans
           GN=D2030.4 PE=2 SV=1
          Length = 123

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -2

Query: 319 CRHHL*PLMDGENSNVPNXGHRYEGER 239
           C HHL  LM  +  N P  GH  +GER
Sbjct: 62  CAHHLISLMKCQTQNAPFAGHACDGER 88


>sp|Q5T0W9|FA83B_HUMAN Protein FAM83B OS=Homo sapiens GN=FAM83B PE=1
           SV=1
          Length = 1011

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 18/46 (39%), Positives = 21/46 (45%)
 Frame = +3

Query: 90  STIISFNGKTTIKTSSTQENPSSYLTHNSLPSLVLKLPLFSSAPPL 227
           STII   G  T K          +LT   LP  + KLPL S AP +
Sbjct: 566 STIIGSQGSETPKEVPDTPTNVQHLTDKPLPESIPKLPLQSEAPKM 611


>sp|Q10231|ERG7_SCHPO Lanosterol synthase OS=Schizosaccharomyces
           pombe GN=erg7 PE=2 SV=1
          Length = 721

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 356 NYMNQVVGLYTDLSSSFVTSHGW 288
           +YM  V G+YT+  SS VT  GW
Sbjct: 624 SYMACVTGVYTETESSLVTQTGW 646
tr_hit_id B7FIC9
Definition tr|B7FIC9|B7FIC9_MEDTR Putative uncharacterized protein OS=Medicago truncatula
Align length 25
Score (bit) 35.0
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914582|Adiantum capillus-veneris mRNA, clone:
YMU001_000060_F04.
         (371 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B7FIC9|B7FIC9_MEDTR Putative uncharacterized protein OS=Medic...    35   1.9  
tr|A3XQW2|A3XQW2_9FLAO Putative transmembrane protein OS=Leeuwen...    35   2.4  
tr|Q9XEU1|Q9XEU1_ORYSA Putative uncharacterized protein OS=Oryza...    34   3.2  
tr|Q9XEP7|Q9XEP7_SORBI Putative uncharacterized protein OS=Sorgh...    34   3.2  
tr|Q2R122|Q2R122_ORYSJ Early flowering 4, putative, expressed OS...    34   3.2  
tr|B7ZZS3|B7ZZS3_MAIZE Putative uncharacterized protein OS=Zea m...    34   3.2  
tr|B6U7D2|B6U7D2_MAIZE Early flowering 4 OS=Zea mays PE=2 SV=1         34   3.2  
tr|B6TYS7|B6TYS7_MAIZE Early flowering 4 OS=Zea mays PE=2 SV=1         34   3.2  
tr|A3CDH8|A3CDH8_ORYSJ Putative uncharacterized protein OS=Oryza...    34   3.2  
tr|A2ZGG2|A2ZGG2_ORYSI Putative uncharacterized protein OS=Oryza...    34   3.2  
tr|B6SH35|B6SH35_MAIZE EARLY flowering 4 protein OS=Zea mays PE=...    34   4.1  
tr|B6SXG0|B6SXG0_MAIZE EARLY flowering 4 protein OS=Zea mays PE=...    33   9.2  
tr|A7PDZ7|A7PDZ7_VITVI Chromosome chr11 scaffold_13, whole genom...    33   9.2  
tr|Q4UCK4|Q4UCK4_THEAN Seryl-tRNA synthetase, putative OS=Theile...    33   9.2  
tr|B0D7V5|B0D7V5_LACBS Siderophore biosynthesis regulatory prote...    33   9.2  

>tr|B7FIC9|B7FIC9_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=4 SV=1
          Length = 114

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 17/25 (68%), Positives = 19/25 (76%)
 Frame = -1

Query: 371 IKELNNYMNQVVGLYTDLSSSFVTS 297
           IKELNN + +VV LY DLSSSF  S
Sbjct: 63  IKELNNNIRRVVDLYVDLSSSFTKS 87


>tr|A3XQW2|A3XQW2_9FLAO Putative transmembrane protein
           OS=Leeuwenhoekiella blandensis MED217 GN=MED217_03890
           PE=4 SV=1
          Length = 234

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 23/56 (41%), Positives = 30/56 (53%)
 Frame = +3

Query: 108 NGKTTIKTSSTQENPSSYLTHNSLPSLVLKLPLFSSAPPLLWEVLSPSYLCPMLGT 275
           +G T I  S    +  S+L HNS+P+LVL   LF    P+ W+VL    L   LGT
Sbjct: 52  SGLTGIIFSPFIHSTLSHLWHNSVPTLVLIAGLFYFYKPVAWQVLLWIVLGSGLGT 107


>tr|Q9XEU1|Q9XEU1_ORYSA Putative uncharacterized protein OS=Oryza
           sativa PE=4 SV=1
          Length = 117

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 15/22 (68%), Positives = 19/22 (86%)
 Frame = -1

Query: 371 IKELNNYMNQVVGLYTDLSSSF 306
           I+ELNN + +VVGLY DLS+SF
Sbjct: 63  IRELNNNIRRVVGLYADLSASF 84


>tr|Q9XEP7|Q9XEP7_SORBI Putative uncharacterized protein OS=Sorghum
           bicolor PE=4 SV=1
          Length = 438

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 15/22 (68%), Positives = 19/22 (86%)
 Frame = -1

Query: 371 IKELNNYMNQVVGLYTDLSSSF 306
           I+ELNN + +VVGLY DLS+SF
Sbjct: 57  IRELNNNIRRVVGLYADLSASF 78


>tr|Q2R122|Q2R122_ORYSJ Early flowering 4, putative, expressed
           OS=Oryza sativa subsp. japonica GN=Os11g0621500 PE=4
           SV=1
          Length = 117

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 15/22 (68%), Positives = 19/22 (86%)
 Frame = -1

Query: 371 IKELNNYMNQVVGLYTDLSSSF 306
           I+ELNN + +VVGLY DLS+SF
Sbjct: 63  IRELNNNIRRVVGLYADLSASF 84


>tr|B7ZZS3|B7ZZS3_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 129

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 15/22 (68%), Positives = 19/22 (86%)
 Frame = -1

Query: 371 IKELNNYMNQVVGLYTDLSSSF 306
           I+ELNN + +VVGLY DLS+SF
Sbjct: 74  IRELNNNIRRVVGLYADLSASF 95


>tr|B6U7D2|B6U7D2_MAIZE Early flowering 4 OS=Zea mays PE=2 SV=1
          Length = 128

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 15/22 (68%), Positives = 19/22 (86%)
 Frame = -1

Query: 371 IKELNNYMNQVVGLYTDLSSSF 306
           I+ELNN + +VVGLY DLS+SF
Sbjct: 74  IRELNNNIRRVVGLYADLSASF 95


>tr|B6TYS7|B6TYS7_MAIZE Early flowering 4 OS=Zea mays PE=2 SV=1
          Length = 129

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 15/22 (68%), Positives = 19/22 (86%)
 Frame = -1

Query: 371 IKELNNYMNQVVGLYTDLSSSF 306
           I+ELNN + +VVGLY DLS+SF
Sbjct: 73  IRELNNNIRRVVGLYADLSASF 94


>tr|A3CDH8|A3CDH8_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_033350 PE=4 SV=1
          Length = 170

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 15/22 (68%), Positives = 19/22 (86%)
 Frame = -1

Query: 371 IKELNNYMNQVVGLYTDLSSSF 306
           I+ELNN + +VVGLY DLS+SF
Sbjct: 63  IRELNNNIRRVVGLYADLSASF 84


>tr|A2ZGG2|A2ZGG2_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_36872 PE=4 SV=1
          Length = 117

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 15/22 (68%), Positives = 19/22 (86%)
 Frame = -1

Query: 371 IKELNNYMNQVVGLYTDLSSSF 306
           I+ELNN + +VVGLY DLS+SF
Sbjct: 63  IRELNNNIRRVVGLYADLSASF 84