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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914587
Clone id YMU001_000060_F10
Library
Length 474
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000060_F10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CTGGATAAGGAGCAGGGATGGGAAGCATACAGTACGGTTTTTTACTCTTTGTCTGGACCA
TGGAAGGAGCCGTGAAAGTCTTAGAGAGAAACCCTTGCCAAAGACAAACAAAGAATTCAA
ATACTATAGGGATATGAGGGGTTTTGATCATGTACCATTGTAGAGTGGGATTGCAGTGGT
CCAAGAAGAGAAAAGTTCTCACAAAGGAGACATTTTCTACAAGTTTTGTAGGATTAACAA
ACTATGGATCTATTGCTTTTACAAAGTGTGAGGACTTAAAGCGGGGTGAACGACAACATG
TAAATACTTTACAAAGAGGTTTGAAGATGAATGGTTTGCTAGAAGATGATGAATGCATTG
CAGGTGTGTCTGATGAGTGTTCGTTTGTGGATACTATGCAAGATTTGGAGTCTTTAGTGG
ATTGCAATTTGCGTATGGGAAGTGAGGTCATGAAAGTATGCTCAATAGAAATCT
■■Homology search results ■■ -
sp_hit_id A6VU13
Definition sp|A6VU13|RF3_MARMS Peptide chain release factor 3 OS=Marinomonas sp. (strain MWYL1)
Align length 56
Score (bit) 30.4
E-value 4.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914587|Adiantum capillus-veneris mRNA, clone:
YMU001_000060_F10.
         (474 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A6VU13|RF3_MARMS Peptide chain release factor 3 OS=Marinomona...    30   4.2  

>sp|A6VU13|RF3_MARMS Peptide chain release factor 3 OS=Marinomonas
           sp. (strain MWYL1) GN=prfC PE=3 SV=1
          Length = 528

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 12/56 (21%)
 Frame = +3

Query: 150 MYHCRVG--------LQWSKKRKVLTKETFSTSFVGLTNYGSI----AFTKCEDLK 281
           M HCR+G        + ++   +   +E FS   +GL N+G+I     FT+ EDLK
Sbjct: 330 MRHCRIGKDIKVTDAVSFTAGDREGVEEAFSGDIIGLHNHGTIQIGDTFTEGEDLK 385
tr_hit_id A9RQL4
Definition tr|A9RQL4|A9RQL4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 81
Score (bit) 59.3
E-value 8.0e-15
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914587|Adiantum capillus-veneris mRNA, clone:
YMU001_000060_F10.
         (474 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RQL4|A9RQL4_PHYPA Predicted protein OS=Physcomitrella paten...    59   8e-15
tr|A9U4Y7|A9U4Y7_PHYPA Predicted protein OS=Physcomitrella paten...    55   5e-14
tr|A9S5R6|A9S5R6_PHYPA Predicted protein OS=Physcomitrella paten...    53   6e-14
tr|A9T931|A9T931_PHYPA Predicted protein OS=Physcomitrella paten...    52   1e-13
tr|A9SA68|A9SA68_PHYPA Predicted protein OS=Physcomitrella paten...    55   1e-13
tr|A9SZ83|A9SZ83_PHYPA Predicted protein OS=Physcomitrella paten...    55   1e-13
tr|A9U5R3|A9U5R3_PHYPA Predicted protein (Fragment) OS=Physcomit...    55   1e-13
tr|A9T7D3|A9T7D3_PHYPA Predicted protein OS=Physcomitrella paten...    53   2e-13
tr|A9RRB6|A9RRB6_PHYPA Predicted protein OS=Physcomitrella paten...    54   2e-13
tr|A9REJ1|A9REJ1_PHYPA Predicted protein OS=Physcomitrella paten...    52   2e-13
tr|A9RMU6|A9RMU6_PHYPA Predicted protein OS=Physcomitrella paten...    51   2e-13
tr|A9TR64|A9TR64_PHYPA Predicted protein OS=Physcomitrella paten...    54   2e-13
tr|A9RU93|A9RU93_PHYPA Predicted protein OS=Physcomitrella paten...    51   2e-13
tr|A9RNG7|A9RNG7_PHYPA Predicted protein OS=Physcomitrella paten...    52   3e-13
tr|A9TA48|A9TA48_PHYPA Predicted protein OS=Physcomitrella paten...    53   3e-13
tr|A9TUD3|A9TUD3_PHYPA Predicted protein OS=Physcomitrella paten...    53   3e-13
tr|A9SR22|A9SR22_PHYPA Predicted protein OS=Physcomitrella paten...    50   4e-13
tr|A9U5F2|A9U5F2_PHYPA Predicted protein (Fragment) OS=Physcomit...    52   4e-13
tr|A9U2P5|A9U2P5_PHYPA Predicted protein OS=Physcomitrella paten...    52   5e-13
tr|A9SGE7|A9SGE7_PHYPA Predicted protein OS=Physcomitrella paten...    51   5e-13
tr|A9RD60|A9RD60_PHYPA Predicted protein OS=Physcomitrella paten...    55   5e-13
tr|A9RPW4|A9RPW4_PHYPA Predicted protein OS=Physcomitrella paten...    52   5e-13
tr|A9U6J4|A9U6J4_PHYPA Predicted protein (Fragment) OS=Physcomit...    52   6e-13
tr|A9T7P9|A9T7P9_PHYPA Predicted protein OS=Physcomitrella paten...    52   7e-13
tr|A9T3G5|A9T3G5_PHYPA Predicted protein OS=Physcomitrella paten...    52   7e-13
tr|A9RTH0|A9RTH0_PHYPA Predicted protein OS=Physcomitrella paten...    51   7e-13
tr|A9RYG1|A9RYG1_PHYPA Predicted protein OS=Physcomitrella paten...    52   8e-13
tr|A9S5T5|A9S5T5_PHYPA Predicted protein OS=Physcomitrella paten...    54   9e-13
tr|A9T4R9|A9T4R9_PHYPA Predicted protein OS=Physcomitrella paten...    52   1e-12
tr|A9U0F3|A9U0F3_PHYPA Predicted protein OS=Physcomitrella paten...    51   1e-12

>tr|A9RQL4|A9RQL4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_69317 PE=4 SV=1
          Length = 503

 Score = 59.3 bits (142), Expect(2) = 8e-15
 Identities = 27/81 (33%), Positives = 49/81 (60%)
 Frame = +3

Query: 228 VGLTNYGSIAFTKCEDLKRGERQHVNTLQRGLKMNGLLEDDECIAGVSDECSFVDTMQDL 407
           +G+T    + F   + +K+ +R ++  +++ LK NG L ++E I+G  +E  F DTM +L
Sbjct: 294 IGMTQDCVLTFKTIDKMKKRDRCYIKNIEKNLKENGELVENEFISGTYEEIGFTDTMGEL 353

Query: 408 ESLVDCNLRMGSEVMKVCSIE 470
             L+ C L++ + V+ VCS E
Sbjct: 354 NYLLQCELQVENRVINVCSKE 374



 Score = 43.9 bits (102), Expect(2) = 8e-15
 Identities = 22/56 (39%), Positives = 36/56 (64%)
 Frame = +2

Query: 5   IRSRDGKHTVRFFTLCLDHGRSRESLREKPLPKTNKEFKYYRDMRGFDHVPL*SGI 172
           IRS+DG   V+F  +C +H ++ + LREKP+  +N++F+   D+  F H PL  G+
Sbjct: 246 IRSQDGMKAVQFLIVCANHEKNHDKLREKPI--SNEKFE---DLEDFYHTPLLIGM 296


>tr|A9U4Y7|A9U4Y7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_102202 PE=4 SV=1
          Length = 273

 Score = 55.1 bits (131), Expect(2) = 5e-14
 Identities = 31/98 (31%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
 Frame = +3

Query: 186 KRKVLTKE--TFSTSFVGLTNYGSIAFTKCEDLKRGERQHVNTLQRGLKMNGLLEDDECI 359
           + +VL+++   F  SF+G+   G+I + K +D KR ER+ +  ++R L+  G L+DDE I
Sbjct: 56  REEVLSRDEGAFDASFIGILENGNIMYKKVDDFKRKERKRLYNIERELRKLGTLQDDERI 115

Query: 360 AGVSDECSFVDTMQDLESLVDCNLRMGSEVMKVCSIEI 473
            GV +E    D+   LE +    L    +++++ S E+
Sbjct: 116 LGVYEENGLEDS---LELITSIGLGDNDKIVEIHSREV 150



 Score = 45.4 bits (106), Expect(2) = 5e-14
 Identities = 20/43 (46%), Positives = 31/43 (72%)
 Frame = +2

Query: 5   IRSRDGKHTVRFFTLCLDHGRSRESLREKPLPKTNKEFKYYRD 133
           +RS DG+  V+F T+  +H R+++ LREKPLPK  + FK +R+
Sbjct: 15  VRSEDGRKAVQFLTVPPNHERNQDRLREKPLPKIVEGFKDFRE 57


>tr|A9S5R6|A9S5R6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_74940 PE=4 SV=1
          Length = 567

 Score = 53.1 bits (126), Expect(2) = 6e-14
 Identities = 29/87 (33%), Positives = 48/87 (55%)
 Frame = +3

Query: 213 FSTSFVGLTNYGSIAFTKCEDLKRGERQHVNTLQRGLKMNGLLEDDECIAGVSDECSFVD 392
           F  SF+G+   G+I + K +D KR ER+ +  ++R L+  G L+DDE I GV +E    D
Sbjct: 446 FDVSFIGILENGNIMYKKVDDFKRKERKRLYNIERELRKLGTLQDDERILGVYEENGLED 505

Query: 393 TMQDLESLVDCNLRMGSEVMKVCSIEI 473
               LE +    L    +++++ S E+
Sbjct: 506 L---LELITSIRLGDNDKIVEIHSREV 529



 Score = 47.0 bits (110), Expect(2) = 6e-14
 Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 6/54 (11%)
 Frame = +2

Query: 5   IRSRDGKHTVRFFTLCLDHGRSRESLREKPLPKTNKEFKYY------RDMRGFD 148
           +RS+DG+  V+F T+ L+H ++R+ LREKPLPK  + FK +      RD   FD
Sbjct: 394 VRSKDGRKVVQFLTVPLNHEQNRDRLREKPLPKIVEGFKDFGEEVLLRDEGAFD 447


>tr|A9T931|A9T931_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_89689 PE=4 SV=1
          Length = 902

 Score = 52.4 bits (124), Expect(2) = 1e-13
 Identities = 30/98 (30%), Positives = 55/98 (56%), Gaps = 2/98 (2%)
 Frame = +3

Query: 186  KRKVLTKE--TFSTSFVGLTNYGSIAFTKCEDLKRGERQHVNTLQRGLKMNGLLEDDECI 359
            + +VL+++   F  SF+G+   G+I + K +D KR ER+ +  ++  L+  G L+DDE I
Sbjct: 760  REEVLSRDEGAFDASFIGILENGNIMYKKVDDFKRKERKRLYNIEGQLRKIGTLQDDERI 819

Query: 360  AGVSDECSFVDTMQDLESLVDCNLRMGSEVMKVCSIEI 473
             GV +E    D+   LE +    L    +++++ S E+
Sbjct: 820  LGVYEENGLEDS---LELITSIGLGDNDKIVEIHSREV 854



 Score = 47.0 bits (110), Expect(2) = 1e-13
 Identities = 21/43 (48%), Positives = 31/43 (72%)
 Frame = +2

Query: 5   IRSRDGKHTVRFFTLCLDHGRSRESLREKPLPKTNKEFKYYRD 133
           +RS DG+  V+F T+  +H R+R+ LREKPLPK  + FK +R+
Sbjct: 719 VRSEDGRKVVQFLTVPPNHERNRDRLREKPLPKIVEGFKDFRE 761


>tr|A9SA68|A9SA68_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_76626 PE=4 SV=1
          Length = 726

 Score = 54.7 bits (130), Expect(2) = 1e-13
 Identities = 32/104 (30%), Positives = 58/104 (55%), Gaps = 2/104 (1%)
 Frame = +3

Query: 168 GLQWSKKRKVLTKET--FSTSFVGLTNYGSIAFTKCEDLKRGERQHVNTLQRGLKMNGLL 341
           G +  ++ +VL+ +   F  SF+G+  YG+I + K +D KR ER+ +  ++  L+  G L
Sbjct: 471 GFKDFREEEVLSGDVGAFDASFIGILEYGNIMYKKVDDFKRKERKRLYDIEGELRKLGTL 530

Query: 342 EDDECIAGVSDECSFVDTMQDLESLVDCNLRMGSEVMKVCSIEI 473
           +DDE I GV +E    D+   LE +    L    +++++ S E+
Sbjct: 531 QDDERILGVYEENGLEDS---LELITSIGLGDNDKIVEIHSREV 571



 Score = 44.7 bits (104), Expect(2) = 1e-13
 Identities = 20/43 (46%), Positives = 30/43 (69%)
 Frame = +2

Query: 5   IRSRDGKHTVRFFTLCLDHGRSRESLREKPLPKTNKEFKYYRD 133
           +RS D +  V+F T+  +H R+R+ LREKPLPK  + FK +R+
Sbjct: 435 VRSEDRRKAVQFLTVLPNHERNRDRLREKPLPKIVEGFKDFRE 477


>tr|A9SZ83|A9SZ83_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_85998 PE=4 SV=1
          Length = 443

 Score = 54.7 bits (130), Expect(2) = 1e-13
 Identities = 29/88 (32%), Positives = 50/88 (56%)
 Frame = +3

Query: 210 TFSTSFVGLTNYGSIAFTKCEDLKRGERQHVNTLQRGLKMNGLLEDDECIAGVSDECSFV 389
           TF  SF+G+   G+I + K +D KR ER+ +  ++R L+  G L+D+E I GV +E    
Sbjct: 238 TFDASFIGILENGNIMYKKVDDFKRKERKRLYNIERELRKLGTLQDNERILGVYEENGLE 297

Query: 390 DTMQDLESLVDCNLRMGSEVMKVCSIEI 473
           D+   LE +    L    +++++ S E+
Sbjct: 298 DS---LELITSIGLEDNDKIVEIHSREV 322



 Score = 44.3 bits (103), Expect(2) = 1e-13
 Identities = 20/39 (51%), Positives = 28/39 (71%)
 Frame = +2

Query: 5   IRSRDGKHTVRFFTLCLDHGRSRESLREKPLPKTNKEFK 121
           +RS DG+  V+F T+  +H R+R+ LREKPLPK  + FK
Sbjct: 187 VRSEDGRKAVQFLTVPPNHERNRDRLREKPLPKIVEGFK 225


>tr|A9U5R3|A9U5R3_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_102795 PE=4 SV=1
          Length = 222

 Score = 54.7 bits (130), Expect(2) = 1e-13
 Identities = 29/88 (32%), Positives = 50/88 (56%)
 Frame = +3

Query: 210 TFSTSFVGLTNYGSIAFTKCEDLKRGERQHVNTLQRGLKMNGLLEDDECIAGVSDECSFV 389
           TF  SF+G+   G+I + K +D KR ER+ +  ++R L+  G L+D+E I GV +E    
Sbjct: 66  TFDASFIGILENGNIMYKKVDDFKRKERKRLYNIERELRKLGTLQDNERILGVYEENGLE 125

Query: 390 DTMQDLESLVDCNLRMGSEVMKVCSIEI 473
           D+   LE +    L    +++++ S E+
Sbjct: 126 DS---LELITSIGLEDNDKIVEIHSREV 150



 Score = 44.3 bits (103), Expect(2) = 1e-13
 Identities = 20/39 (51%), Positives = 28/39 (71%)
 Frame = +2

Query: 5   IRSRDGKHTVRFFTLCLDHGRSRESLREKPLPKTNKEFK 121
           +RS DG+  V+F T+  +H R+R+ LREKPLPK  + FK
Sbjct: 15  VRSEDGRKAVQFLTVPPNHERNRDRLREKPLPKIVEGFK 53


>tr|A9T7D3|A9T7D3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_89057 PE=4 SV=1
          Length = 1039

 Score = 52.8 bits (125), Expect(2) = 2e-13
 Identities = 27/79 (34%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
 Frame = +3

Query: 186 KRKVLTKE--TFSTSFVGLTNYGSIAFTKCEDLKRGERQHVNTLQRGLKMNGLLEDDECI 359
           K +VL+++   F  SF+G+   G+I + K +D KR ER+ +  ++  L+  G L+DDE I
Sbjct: 690 KEEVLSRDEGAFDASFIGILENGNIIYKKVDDFKRKERKRLYDIEGQLRKIGTLQDDERI 749

Query: 360 AGVSDECSFVDTMQDLESL 416
            GV +E    D+++ + S+
Sbjct: 750 LGVYEENGLKDSLELITSI 768



 Score = 45.8 bits (107), Expect(2) = 2e-13
 Identities = 20/47 (42%), Positives = 32/47 (68%)
 Frame = +2

Query: 5   IRSRDGKHTVRFFTLCLDHGRSRESLREKPLPKTNKEFKYYRDMRGF 145
           +RS DG+  ++F T+  +H R+R+ LREKPLPK  + FK + + R +
Sbjct: 640 VRSEDGRKAIQFLTVPPNHERNRDRLREKPLPKIVEGFKDFGEERDY 686


>tr|A9RRB6|A9RRB6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_69607 PE=4 SV=1
          Length = 921

 Score = 53.9 bits (128), Expect(2) = 2e-13
 Identities = 31/96 (32%), Positives = 55/96 (57%), Gaps = 2/96 (2%)
 Frame = +3

Query: 192 KVLTKE--TFSTSFVGLTNYGSIAFTKCEDLKRGERQHVNTLQRGLKMNGLLEDDECIAG 365
           +VL+++  TF  SF+G+   G+I + K +D KR ER+ +  ++  L+  G L+DDE I G
Sbjct: 549 EVLSRDEGTFDASFIGILENGNIMYKKVDDFKRKERKRLYDIEGQLRKLGTLQDDERILG 608

Query: 366 VSDECSFVDTMQDLESLVDCNLRMGSEVMKVCSIEI 473
           V +E    D+   LE +    L    +++++ S E+
Sbjct: 609 VYEENGLEDS---LELITSIGLEDNDKIVEIHSREV 641



 Score = 44.7 bits (104), Expect(2) = 2e-13
 Identities = 20/39 (51%), Positives = 28/39 (71%)
 Frame = +2

Query: 5   IRSRDGKHTVRFFTLCLDHGRSRESLREKPLPKTNKEFK 121
           +RS DG+  V+F T+  +H R+R+ LREKPLPK  + FK
Sbjct: 506 VRSEDGRKAVQFLTIPPNHERNRDRLREKPLPKIVEGFK 544


>tr|A9REJ1|A9REJ1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_65086 PE=4 SV=1
          Length = 202

 Score = 51.6 bits (122), Expect(2) = 2e-13
 Identities = 26/79 (32%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
 Frame = +3

Query: 186 KRKVLTKE--TFSTSFVGLTNYGSIAFTKCEDLKRGERQHVNTLQRGLKMNGLLEDDECI 359
           + +VL+++   F  SF+G+   G+I + K +D KR ER+ +  ++  L+  G L+DDE I
Sbjct: 56  REEVLSRDEGAFDASFIGILENGNIMYKKVDDFKRKERKRLYDIEGQLRKIGTLQDDERI 115

Query: 360 AGVSDECSFVDTMQDLESL 416
            GV +E    D+++ + S+
Sbjct: 116 LGVYEENGLEDSLELITSI 134



 Score = 47.0 bits (110), Expect(2) = 2e-13
 Identities = 21/43 (48%), Positives = 31/43 (72%)
 Frame = +2

Query: 5   IRSRDGKHTVRFFTLCLDHGRSRESLREKPLPKTNKEFKYYRD 133
           +RS DG+  V+F T+  +H R+R+ LREKPLPK  + FK +R+
Sbjct: 15  VRSEDGRKAVQFLTVPPNHERNRDRLREKPLPKIVEGFKDFRE 57