BP914603
Clone id YMU001_000060_H03
Library
Length 621
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000060_H03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CTTCACTGTTTGCATCATCCTCATTTTCCTGATATTCATATCCAAGTAAGACTACCTCCA
ACTCATCACTTTCCTCCAAAGTTCTCCTCTTCGCTCCAGGGTTGCCTTGGGCTAAGACAA
TTTGTAAGCTGTCATCAATATCCTCTGCCTGTCGCCCAATACACTTCTGCACATTGGCAT
CCGTGGCATGGTATGCTTTCTTTTGACTTACACAACCTCCTGTGGCATACTTGTTTCTGA
CAAGCAGCTTTGGGCACGTCATCCCCAGCTCCTGCTGGTCAAGTCCAATGTCAGAAAGGT
ACTGATTCCTTCATTTTTACCTTGTCGAGTTGTTGACTCCCTGTGCGGGGCTGTAAGCAA
ATTTTTGACTCCTTGCATCTTGCATTATCATGGTCGTCACTACCCTTTTGAGAAGGAGGA
GTCACTTCTTGAGGGTCACAACTTGCATTTGTGTTCACAAGACATTCCACATTCAGAACA
GCACCAGGCTTCAAGCAACTTCCAACATCAGTGTGCCCTTGATGCCGCACACGCTTTGTT
ATCTGAGGCCTTGCGGATGCTTGAAGATCTTCCCTCTGTCTTACTTTTCTCACCAGCTCC
TCCTCAGCTGCATCACATGCC
■■Homology search results ■■ -
sp_hit_id O88766
Definition sp|O88766|MMP8_RAT Neutrophil collagenase OS=Rattus norvegicus
Align length 81
Score (bit) 33.9
E-value 0.7
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914603|Adiantum capillus-veneris mRNA, clone:
YMU001_000060_H03.
(621 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|O88766|MMP8_RAT Neutrophil collagenase OS=Rattus norvegicus G... 34 0.70
sp|P35500|SCNA_DROME Sodium channel protein para OS=Drosophila m... 33 1.6
sp|Q31E66|HIS5_THICR Imidazole glycerol phosphate synthase subun... 32 2.6
sp|A8MQ03|CI169_HUMAN UPF0574 protein C9orf169 OS=Homo sapiens G... 32 3.5
sp|P22894|MMP8_HUMAN Neutrophil collagenase OS=Homo sapiens GN=M... 31 5.9
sp|Q12837|PO4F2_HUMAN POU domain, class 4, transcription factor ... 30 7.7
sp|P79926|HNF4B_XENLA Hepatocyte nuclear factor 4-beta OS=Xenopu... 30 7.7

>sp|O88766|MMP8_RAT Neutrophil collagenase OS=Rattus norvegicus
GN=Mmp8 PE=2 SV=1
Length = 466

Score = 33.9 bits (76), Expect = 0.70
Identities = 25/81 (30%), Positives = 33/81 (40%)
Frame = +2

Query: 239 DKQLWARHPQLLLVKSNVRKVLIPSFLPCRVVDSLCGAVSKFLTPCILHYHGRHYPFEKE 418
DK W RHPQL V N + P FLP + L A F + + GR Y
Sbjct: 301 DKYFWRRHPQLRTVDLNFISLFWP-FLP----NGLQAAYEDFDRDLVFLFKGRQYWALSA 355

Query: 419 ESLLEGHNLHLCSQDIPHSEQ 481
L +G+ + + P S Q
Sbjct: 356 YDLQQGYPRDISNYGFPRSVQ 376


>sp|P35500|SCNA_DROME Sodium channel protein para OS=Drosophila
melanogaster GN=para PE=2 SV=3
Length = 2131

Score = 32.7 bits (73), Expect = 1.6
Identities = 20/79 (25%), Positives = 37/79 (46%)
Frame = -2

Query: 614 DAAEEELVRKVRQREDLQASARPQITKRVRHQGHTDVGSCLKPGAVLNVECLVNTNASCD 435
+AAEEE +R+ E+ A+ ++ +R Q + A L+ E + SC
Sbjct: 443 EAAEEEAIREA---EEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCI 499

Query: 434 PQEVTPPSQKGSDDHDNAR 378
E+ +KG+DD++ +
Sbjct: 500 SYELFVGGEKGNDDNNKEK 518


>sp|Q31E66|HIS5_THICR Imidazole glycerol phosphate synthase subunit
hisH OS=Thiomicrospira crunogena (strain XCL-2) GN=hisH
PE=3 SV=1
Length = 213

Score = 32.0 bits (71), Expect = 2.6
Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = -3

Query: 262 MTCPKLLVRNKYATGGCVS-QKKAYHATDANVQKCIGRQAEDIDDSLQIVLAQGNPGAK 89
MT KL+ Y G S K A HA D+N + CI +AEDI S ++ G AK
Sbjct: 1 MTDQKLVTVIDYGMGNLRSVAKAAEHAADSNTRICISDKAEDI-RSADAIIFPGQGAAK 58


>sp|A8MQ03|CI169_HUMAN UPF0574 protein C9orf169 OS=Homo sapiens
GN=C9orf169 PE=2 SV=1
Length = 144

Score = 31.6 bits (70), Expect = 3.5
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = -2

Query: 278 PAGAGDDVPKAACQKQVCHRRLCKSKESIPCHGCQCAEV 162
PAG GDD+ C CH C CH C C +
Sbjct: 107 PAGRGDDIAHHCCCCPCCH--CCHCPPFCRCHSCCCCVI 143


>sp|P22894|MMP8_HUMAN Neutrophil collagenase OS=Homo sapiens GN=MMP8
PE=1 SV=1
Length = 467

Score = 30.8 bits (68), Expect = 5.9
Identities = 23/85 (27%), Positives = 34/85 (40%)
Frame = +2

Query: 227 ILVSDKQLWARHPQLLLVKSNVRKVLIPSFLPCRVVDSLCGAVSKFLTPCILHYHGRHYP 406
+ D+ W RHPQL V+ N + PS LP + A F I + G Y
Sbjct: 296 LFFKDRYFWRRHPQLQRVEMNFISLFWPS-LP----TGIQAAYEDFDRDLIFLFKGNQYW 350

Query: 407 FEKEESLLEGHNLHLCSQDIPHSEQ 481
+L+G+ + + P S Q
Sbjct: 351 ALSGYDILQGYPKDISNYGFPSSVQ 375


>sp|Q12837|PO4F2_HUMAN POU domain, class 4, transcription factor 2
OS=Homo sapiens GN=POU4F2 PE=2 SV=1
Length = 410

Score = 30.4 bits (67), Expect = 7.7
Identities = 22/75 (29%), Positives = 27/75 (36%), Gaps = 20/75 (26%)
Frame = +2

Query: 371 PCIL-----HYHGRHYPFEKEESLLEGHNLHLCSQDI---------------PHSEQHQA 490
PC L H+H H+ + LEG L S + P H A
Sbjct: 165 PCALAGTHHHHHHHHHHHHQPHQALEGELLEHLSPGLALGAMAGPDGAVVSTPAHAPHMA 224

Query: 491 SSNFQHQCALDAAHA 535
+ N HQ AL AHA
Sbjct: 225 TMNPMHQAALSMAHA 239


>sp|P79926|HNF4B_XENLA Hepatocyte nuclear factor 4-beta OS=Xenopus
laevis GN=hnf4b PE=2 SV=1
Length = 446

Score = 30.4 bits (67), Expect = 7.7
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Frame = -2

Query: 524 HQGHTDVGSCLKPGAVL---NVECLVNTNASCDPQEVTPPSQKGSDDHDNARCKESKICL 354
+ GH+ + L PG + N+ +++T +S P E +PP+ S+D+ S I L
Sbjct: 376 NSGHSSLNLDLLPGPTVHSHNLHSVIHTVSSLSP-ETSPPTNSTSEDYKMNTATVSSIPL 434

Query: 353 QPRT 342
RT
Sbjct: 435 MQRT 438


tr_hit_id Q4N858
Definition tr|Q4N858|Q4N858_THEPA Tash1 protein, putative OS=Theileria parva
Align length 93
Score (bit) 37.0
E-value 0.94
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914603|Adiantum capillus-veneris mRNA, clone:
YMU001_000060_H03.
(621 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q4N858|Q4N858_THEPA Tash1 protein, putative OS=Theileria parv... 37 0.94
tr|A4U8R8|A4U8R8_9BACT Permease protein OS=Aplysina aerophoba ba... 37 1.2
tr|B4MB18|B4MB18_DROVI GJ15559 OS=Drosophila virilis GN=GJ15559 ... 37 1.2
tr|B4MQZ4|B4MQZ4_DROWI GK21970 OS=Drosophila willistoni GN=GK219... 35 3.6
tr|Q1M8J2|Q1M8J2_RHIL3 Putative uncharacterized protein OS=Rhizo... 35 4.7
tr|Q4YTK0|Q4YTK0_PLABE Putative uncharacterized protein (Fragmen... 34 7.9
tr|B8GKI9|B8GKI9_9EURY Putative uncharacterized protein OS=Candi... 34 7.9

>tr|Q4N858|Q4N858_THEPA Tash1 protein, putative OS=Theileria parva
GN=TP01_0612 PE=4 SV=1
Length = 308

Score = 37.0 bits (84), Expect = 0.94
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
Frame = -2

Query: 614 DAAEEELV--RKVRQREDLQASARPQITKRVRHQGHTDVGSCLKPGAVLNVECLVNTNAS 441
D+A EEL +K +QR+DL S + +I +R+ + L+P + S
Sbjct: 212 DSASEELTEEQKKQQRKDLMESLKKKIQQRIEDKSKESESKALEPET-------IQFEVS 264

Query: 440 CDPQEVTPPSQKGSDDHDNARCKESKICLQPRT 342
D +E P+ KG D +SK P T
Sbjct: 265 SDEEEADEPTSKGDDYDKEEPPSDSKDKRDPST 297


>tr|A4U8R8|A4U8R8_9BACT Permease protein OS=Aplysina aerophoba
bacterial symbiont clone pAPKS18 PE=3 SV=1
Length = 275

Score = 36.6 bits (83), Expect = 1.2
Identities = 29/86 (33%), Positives = 38/86 (44%)
Frame = +3

Query: 186 AWYAFF*LTQPPVAYLFLTSSFGHVIPSSCWSSPMSERY*FLHFYLVELLTPCAGL*ANF 365
A +AF V +FL S+ H +P WS + ELL+P A
Sbjct: 201 ALFAFITSWDELVIAIFLASTEEHTLPRRMWSG------------IRELLSPTIMAVATM 248

Query: 366 *LLASCIIMVVTTLLRRRSHFLRVTT 443
+L S +M+V LLRRRS LR T
Sbjct: 249 LILTSIGLMIVMELLRRRSERLRGIT 274


>tr|B4MB18|B4MB18_DROVI GJ15559 OS=Drosophila virilis GN=GJ15559
PE=4 SV=1
Length = 1453

Score = 36.6 bits (83), Expect = 1.2
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Frame = +2

Query: 383 HYHGRHYPFEKEESLLEGHNLHLCSQDIPHSEQHQAS----SNFQHQCALDAAHALLSE 547
H+H RH+ L + LC+ PHS + ++S S+ Q +C+LD +A LS+
Sbjct: 195 HHHRRHHRCRSCSGSLHNCSHGLCTHSQPHSSERRSSTHLGSDVQQECSLDPTNANLSQ 253


>tr|B4MQZ4|B4MQZ4_DROWI GK21970 OS=Drosophila willistoni GN=GK21970
PE=4 SV=1
Length = 821

Score = 35.0 bits (79), Expect = 3.6
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Frame = -2

Query: 611 AAEEELVRKVRQREDLQ----ASARPQITKRVRHQGHTDVGSCLKPGAVLNVECLVNTNA 444
AAE+E ++ VRQR LQ +A T T + + +V++ + L +A
Sbjct: 268 AAEQEKIKSVRQRPQLQLPLKEAATAATTSAAAAAATTTISDVAQSSSVIS-QRLDMQDA 326

Query: 443 SCDPQEVTPPSQKGSDDHDNARCKESK 363
C E P DD D A +E+K
Sbjct: 327 GCKGVEANPNGNGNDDDEDEANGEETK 353


>tr|Q1M8J2|Q1M8J2_RHIL3 Putative uncharacterized protein
OS=Rhizobium leguminosarum bv. viciae (strain 3841)
GN=pRL90022 PE=4 SV=1
Length = 164

Score = 34.7 bits (78), Expect = 4.7
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +2

Query: 305 IPSFLPCRVVDSLCGAVSKFLTPCILHYH 391
I FLPC + +SLCG +S+ L P +L H
Sbjct: 29 IADFLPCHIDESLCGRISRGLIPLLLTTH 57


>tr|Q4YTK0|Q4YTK0_PLABE Putative uncharacterized protein (Fragment)
OS=Plasmodium berghei GN=PB001244.02.0 PE=4 SV=1
Length = 725

Score = 33.9 bits (76), Expect = 7.9
Identities = 22/101 (21%), Positives = 48/101 (47%)
Frame = -2

Query: 608 AEEELVRKVRQREDLQASARPQITKRVRHQGHTDVGSCLKPGAVLNVECLVNTNASCDPQ 429
+++ V V E + S++ +++ + D+G+ L+ AVLN ++N + +
Sbjct: 444 SDQNEVSLVETTEISKLSSKEVEKAKLQLKEDMDLGNMLRKNAVLNTNNIINLDFELNET 503

Query: 428 EVTPPSQKGSDDHDNARCKESKICLQPRTGSQQLDKVKMKE 306
E+ P K ++++ KE K + + DK+K K+
Sbjct: 504 EIEEPDVKDVENNNTEEKKEEKT-------NNEKDKIKEKK 537


>tr|B8GKI9|B8GKI9_9EURY Putative uncharacterized protein
OS=Candidatus Methanosphaerula palustris E1-9c
GN=Mpal_0499 PE=3 SV=1
Length = 242

Score = 33.9 bits (76), Expect = 7.9
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 12/51 (23%)
Frame = +3

Query: 171 TLASVAWYAFF*LTQPPVAY------------LFLTSSFGHVIPSSCWSSP 287
TLA+ WYA+ + P + Y LFL S + V PSS WS P
Sbjct: 81 TLANTFWYAYTLIIGPTLMYPTVSEAGFLGVFLFLASGYLEVFPSSAWSLP 131