BP914606
Clone id YMU001_000060_H06
Library
Length 587
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000060_H06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
TGACACGTCAGCAGTTTGTTGCAAACGTTGTGATGGCTGCCCCTTTGTCAAATCAATAAA
GTCTTCGTTGGCTGTTAAGATACTGGCATTGAAACTGCTTTGTGCTGGTTGGCTGTTTTA
CGTATAAGACAAGCAGTACACAAGTACCCCAATTTTTTAAAGCCCCCATTGACCGGCCCA
ACTTGGTTGGCCTCCCCCAAAATTAAAGCCTATGTGAACAACACTCTTATAATTTTTAAT
CCCCATGTGACATTAGCCCTTCAATTAAATTTAAGTAGAAACAAAAGCATGAAGACCAGC
TAACGATGTCAATTTCCGGACGCTTCTTCCCGTGCCTCTCCCTCTAGCGCTGGCCTTGTG
TGCTCTCACCNGCAAAATGGATACTTTGCAGCCATGGCCTTAGATGTGCCCGTCTCATTT
CTCTCGTATTTAGACGAGATTCCGAACACTGTTCTCCTGGAAAAAATCCCTTGCACCCAA
AATGATAAGTATTCCCGATTCCCTGACTCCAGAGTTGGAACGCGTTCCGGATGCAGTTTC
TGCTCTCGGAGCACCTATCCTAGAACCTGCTCCTGCACCTATTCAAG
■■Homology search results ■■ -
sp_hit_id A4W3A5
Definition sp|A4W3A5|RLMN_STRS2 Ribosomal RNA large subunit methyltransferase N OS=Streptococcus suis (strain 98HAH33)
Align length 48
Score (bit) 33.1
E-value 1.1
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914606|Adiantum capillus-veneris mRNA, clone:
YMU001_000060_H06.
(587 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|A4W3A5|RLMN_STRS2 Ribosomal RNA large subunit methyltransfera... 33 1.1
sp|Q48SK0|RLMN_STRPM Ribosomal RNA large subunit methyltransfera... 32 2.3
sp|A2RDK1|RLMN_STRPG Ribosomal RNA large subunit methyltransfera... 32 2.3
sp|Q1J5R7|RLMN_STRPF Ribosomal RNA large subunit methyltransfera... 32 2.3
sp|Q1JG02|RLMN_STRPD Ribosomal RNA large subunit methyltransfera... 32 2.3
sp|Q1JKX6|RLMN_STRPC Ribosomal RNA large subunit methyltransfera... 32 2.3
sp|Q1JAS5|RLMN_STRPB Ribosomal RNA large subunit methyltransfera... 32 2.3
sp|Q8P058|RLMN_STRP8 Ribosomal RNA large subunit methyltransfera... 32 2.3
sp|Q5XAZ6|RLMN_STRP6 Ribosomal RNA large subunit methyltransfera... 32 2.3
sp|Q7CEX7|RLMN_STRP3 Ribosomal RNA large subunit methyltransfera... 32 2.3
sp|Q99YU5|RLMN_STRP1 Ribosomal RNA large subunit methyltransfera... 32 2.3
sp|Q21V75|COBQ_RHOFD Cobyric acid synthase OS=Rhodoferax ferrire... 32 3.1
sp|Q03J17|RLMN_STRTD Ribosomal RNA large subunit methyltransfera... 31 5.2
sp|Q5M2V3|RLMN_STRT2 Ribosomal RNA large subunit methyltransfera... 31 5.2
sp|Q5LY98|RLMN_STRT1 Ribosomal RNA large subunit methyltransfera... 31 5.2
sp|A3CLL3|RLMN_STRSV Ribosomal RNA large subunit methyltransfera... 31 5.2
sp|B2INF0|RLMN_STRPS Ribosomal RNA large subunit methyltransfera... 31 5.2
sp|Q97RN5|RLMN_STRPN Ribosomal RNA large subunit methyltransfera... 31 5.2
sp|B1IAU3|RLMN_STRPI Ribosomal RNA large subunit methyltransfera... 31 5.2
sp|Q8DVG8|RLMN_STRMU Ribosomal RNA large subunit methyltransfera... 31 5.2
sp|A8AVZ7|RLMN_STRGC Ribosomal RNA large subunit methyltransfera... 31 5.2
sp|Q8E1A3|RLMN_STRA5 Ribosomal RNA large subunit methyltransfera... 31 5.2
sp|Q3K2R2|RLMN_STRA1 Ribosomal RNA large subunit methyltransfera... 31 5.2
sp|O70305|ATX2_MOUSE Ataxin-2 OS=Mus musculus GN=Atxn2 PE=1 SV=1 31 5.2

>sp|A4W3A5|RLMN_STRS2 Ribosomal RNA large subunit methyltransferase
N OS=Streptococcus suis (strain 98HAH33) GN=rlmN PE=3
SV=1
Length = 370

Score = 33.1 bits (74), Expect = 1.1
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +1

Query: 421 LSYLDEIPNTVLLEKIPCTQNDKYSRFPDSRVGTRSGCSFCSRSTYPR 564
+ YL E+P+ +L+E + Q+ S ++VG GC+FC+ P+
Sbjct: 78 IKYLFELPDGMLIETVLMHQHYGLSVCVTTQVGCNIGCTFCASGLIPK 125


>sp|Q48SK0|RLMN_STRPM Ribosomal RNA large subunit methyltransferase
N OS=Streptococcus pyogenes serotype M28 GN=rlmN PE=3
SV=1
Length = 359

Score = 32.0 bits (71), Expect = 2.3
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +1

Query: 421 LSYLDEIPNTVLLEKIPCTQNDKYSRFPDSRVGTRSGCSFCS 546
+ YL E+P+ +L+E + Q+ +S ++VG GC+FC+
Sbjct: 78 VKYLFELPDGMLIETVLMRQHYGHSVCVTTQVGCNIGCTFCA 119


>sp|A2RDK1|RLMN_STRPG Ribosomal RNA large subunit methyltransferase
N OS=Streptococcus pyogenes serotype M5 (strain
Manfredo) GN=rlmN PE=3 SV=1
Length = 359

Score = 32.0 bits (71), Expect = 2.3
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +1

Query: 421 LSYLDEIPNTVLLEKIPCTQNDKYSRFPDSRVGTRSGCSFCS 546
+ YL E+P+ +L+E + Q+ +S ++VG GC+FC+
Sbjct: 78 VKYLFELPDGMLIETVLMRQHYGHSVCVTTQVGCNIGCTFCA 119


>sp|Q1J5R7|RLMN_STRPF Ribosomal RNA large subunit methyltransferase
N OS=Streptococcus pyogenes serotype M4 (strain
MGAS10750) GN=rlmN PE=3 SV=1
Length = 359

Score = 32.0 bits (71), Expect = 2.3
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +1

Query: 421 LSYLDEIPNTVLLEKIPCTQNDKYSRFPDSRVGTRSGCSFCS 546
+ YL E+P+ +L+E + Q+ +S ++VG GC+FC+
Sbjct: 78 VKYLFELPDGMLIETVLMRQHYGHSVCVTTQVGCNIGCTFCA 119


>sp|Q1JG02|RLMN_STRPD Ribosomal RNA large subunit methyltransferase
N OS=Streptococcus pyogenes serotype M2 (strain
MGAS10270) GN=rlmN PE=3 SV=1
Length = 359

Score = 32.0 bits (71), Expect = 2.3
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +1

Query: 421 LSYLDEIPNTVLLEKIPCTQNDKYSRFPDSRVGTRSGCSFCS 546
+ YL E+P+ +L+E + Q+ +S ++VG GC+FC+
Sbjct: 78 VKYLFELPDGMLIETVLMRQHYGHSVCVTTQVGCNIGCTFCA 119


>sp|Q1JKX6|RLMN_STRPC Ribosomal RNA large subunit methyltransferase
N OS=Streptococcus pyogenes serotype M12 (strain
MGAS9429) GN=rlmN PE=3 SV=1
Length = 359

Score = 32.0 bits (71), Expect = 2.3
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +1

Query: 421 LSYLDEIPNTVLLEKIPCTQNDKYSRFPDSRVGTRSGCSFCS 546
+ YL E+P+ +L+E + Q+ +S ++VG GC+FC+
Sbjct: 78 VKYLFELPDGMLIETVLMRQHYGHSVCVTTQVGCNIGCTFCA 119


>sp|Q1JAS5|RLMN_STRPB Ribosomal RNA large subunit methyltransferase
N OS=Streptococcus pyogenes serotype M12 (strain
MGAS2096) GN=rlmN PE=3 SV=1
Length = 359

Score = 32.0 bits (71), Expect = 2.3
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +1

Query: 421 LSYLDEIPNTVLLEKIPCTQNDKYSRFPDSRVGTRSGCSFCS 546
+ YL E+P+ +L+E + Q+ +S ++VG GC+FC+
Sbjct: 78 VKYLFELPDGMLIETVLMRQHYGHSVCVTTQVGCNIGCTFCA 119


>sp|Q8P058|RLMN_STRP8 Ribosomal RNA large subunit methyltransferase
N OS=Streptococcus pyogenes serotype M18 GN=rlmN PE=3
SV=1
Length = 359

Score = 32.0 bits (71), Expect = 2.3
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +1

Query: 421 LSYLDEIPNTVLLEKIPCTQNDKYSRFPDSRVGTRSGCSFCS 546
+ YL E+P+ +L+E + Q+ +S ++VG GC+FC+
Sbjct: 78 VKYLFELPDGMLIETVLMRQHYGHSVCVTTQVGCNIGCTFCA 119


>sp|Q5XAZ6|RLMN_STRP6 Ribosomal RNA large subunit methyltransferase
N OS=Streptococcus pyogenes serotype M6 GN=rlmN PE=3
SV=1
Length = 359

Score = 32.0 bits (71), Expect = 2.3
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +1

Query: 421 LSYLDEIPNTVLLEKIPCTQNDKYSRFPDSRVGTRSGCSFCS 546
+ YL E+P+ +L+E + Q+ +S ++VG GC+FC+
Sbjct: 78 VKYLFELPDGMLIETVLMRQHYGHSVCVTTQVGCNIGCTFCA 119


>sp|Q7CEX7|RLMN_STRP3 Ribosomal RNA large subunit methyltransferase
N OS=Streptococcus pyogenes serotype M3 GN=rlmN PE=3
SV=1
Length = 359

Score = 32.0 bits (71), Expect = 2.3
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +1

Query: 421 LSYLDEIPNTVLLEKIPCTQNDKYSRFPDSRVGTRSGCSFCS 546
+ YL E+P+ +L+E + Q+ +S ++VG GC+FC+
Sbjct: 78 VKYLFELPDGMLIETVLMRQHYGHSVCVTTQVGCNIGCTFCA 119


tr_hit_id A1A0H2
Definition tr|A1A0H2|A1A0H2_BIFAA LacI-family transcriptional regulator OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083)
Align length 58
Score (bit) 35.4
E-value 2.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914606|Adiantum capillus-veneris mRNA, clone:
YMU001_000060_H06.
(587 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A1A0H2|A1A0H2_BIFAA LacI-family transcriptional regulator OS=... 35 2.4
tr|B6XVS4|B6XVS4_9BIFI Putative uncharacterized protein OS=Bifid... 35 2.4
tr|B6XL79|B6XL79_9BIFI Putative uncharacterized protein OS=Bifid... 35 2.4
tr|A7A4C9|A7A4C9_BIFAD Putative uncharacterized protein OS=Bifid... 35 2.4
tr|B1SDD5|B1SDD5_9STRE Putative uncharacterized protein OS=Strep... 34 5.3
tr|Q2IGF1|Q2IGF1_ANADE Response regulator receiver domain protei... 33 9.1
tr|B4UFS3|B4UFS3_ANASK Response regulator receiver protein OS=An... 33 9.1
tr|B8J9G6|B8J9G6_9DELT Response regulator receiver protein OS=An... 33 9.1

>tr|A1A0H2|A1A0H2_BIFAA LacI-family transcriptional regulator
OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM
20083) GN=BAD_0424 PE=4 SV=1
Length = 339

Score = 35.4 bits (80), Expect = 2.4
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
Frame = -1

Query: 569 QVLG*VLREQKLHPERVPTLESGNREYL-SFWVQGIFSRRT-----VFGISSKYERNE 414
+VL +RE KLH V T E GNR++ S W+ + R+T VF ++ ERN+
Sbjct: 80 EVLRGAIREAKLHDLNVITTEGGNRQHPDSSWIDNMLRRQTDGAILVFSSLTRIERNK 137


>tr|B6XVS4|B6XVS4_9BIFI Putative uncharacterized protein
OS=Bifidobacterium catenulatum DSM 16992 GN=BIFCAT_01340
PE=4 SV=1
Length = 338

Score = 35.4 bits (80), Expect = 2.4
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
Frame = -1

Query: 569 QVLG*VLREQKLHPERVPTLESGNREYL-SFWVQGIFSRRT-----VFGISSKYERNE 414
+VL +RE KLH V T E GNR++ S W+ + R+T VF ++ ERN+
Sbjct: 80 EVLRGAIREAKLHDLNVITTEGGNRQHPDSSWIDNMLRRQTDGAILVFSSLTRIERNK 137


>tr|B6XL79|B6XL79_9BIFI Putative uncharacterized protein
OS=Bifidobacterium pseudocatenulatum DSM 20438
GN=BIFPSEUDO_00053 PE=4 SV=1
Length = 338

Score = 35.4 bits (80), Expect = 2.4
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
Frame = -1

Query: 569 QVLG*VLREQKLHPERVPTLESGNREYL-SFWVQGIFSRRT-----VFGISSKYERNE 414
+VL +RE KLH V T E GNR++ S W+ + R+T VF ++ ERN+
Sbjct: 80 EVLRGAIREAKLHDLNVITTEGGNRQHPDSSWIDNMLRRQTDGAILVFSSLTRIERNK 137


>tr|A7A4C9|A7A4C9_BIFAD Putative uncharacterized protein
OS=Bifidobacterium adolescentis L2-32 GN=BIFADO_00687
PE=4 SV=1
Length = 339

Score = 35.4 bits (80), Expect = 2.4
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
Frame = -1

Query: 569 QVLG*VLREQKLHPERVPTLESGNREYL-SFWVQGIFSRRT-----VFGISSKYERNE 414
+VL +RE KLH V T E GNR++ S W+ + R+T VF ++ ERN+
Sbjct: 80 EVLRGAIREAKLHDLNVITTEGGNRQHPDSSWIDNMLRRQTDGAILVFSSLTRIERNK 137


>tr|B1SDD5|B1SDD5_9STRE Putative uncharacterized protein
OS=Streptococcus infantarius subsp. infantarius ATCC
BAA-102 GN=STRINF_00682 PE=4 SV=1
Length = 366

Score = 34.3 bits (77), Expect = 5.3
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +1

Query: 421 LSYLDEIPNTVLLEKIPCTQNDKYSRFPDSRVGTRSGCSFCS 546
+ YL E+P+++L+E + Q+ S S+VG GCSFC+
Sbjct: 85 VKYLFELPDSMLIETVLMRQHYGLSVCVTSQVGCNIGCSFCA 126


>tr|Q2IGF1|Q2IGF1_ANADE Response regulator receiver domain protein
(CheY-like) OS=Anaeromyxobacter dehalogenans (strain
2CP-C) GN=Adeh_3891 PE=4 SV=1
Length = 138

Score = 33.5 bits (75), Expect = 9.1
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +1

Query: 118 LRIRQAVHKYPNFLKPPLTGPTWLASPKIKAYVNNTLIIFNP 243
L + +A+H+YP + P+ T LA+P +KA + ++F P
Sbjct: 69 LGVAEALHRYPELEQVPVLFTTGLAAPAVKALLAPAPVLFKP 110


>tr|B4UFS3|B4UFS3_ANASK Response regulator receiver protein
OS=Anaeromyxobacter sp. (strain K) GN=AnaeK_3995 PE=4
SV=1
Length = 138

Score = 33.5 bits (75), Expect = 9.1
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +1

Query: 118 LRIRQAVHKYPNFLKPPLTGPTWLASPKIKAYVNNTLIIFNP 243
L + +A+H+YP + P+ T LA+P +KA + ++F P
Sbjct: 69 LGVAEALHRYPELEQVPVLFTTGLAAPAVKALLAPAPVLFKP 110


>tr|B8J9G6|B8J9G6_9DELT Response regulator receiver protein
OS=Anaeromyxobacter dehalogenans 2CP-1 GN=A2cp1_4036
PE=4 SV=1
Length = 138

Score = 33.5 bits (75), Expect = 9.1
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +1

Query: 118 LRIRQAVHKYPNFLKPPLTGPTWLASPKIKAYVNNTLIIFNP 243
L + +A+H+YP + P+ T LA+P +KA + ++F P
Sbjct: 69 LGVAEALHRYPELEQVPVLFTTGLAAPAVKALLAPAPVLFKP 110