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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914610
Clone id YMU001_000060_H11
Library
Length 561
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000060_H11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GTCAAGGGAGTTTTATTCTCAGAGCAAAGAGGCGTTTCTTCTCGACTGAGGGGTCATTTG
AAGATGAGTGTGACATTGGTAATTCCTTCATCCTTGGCATTGATACCAGAGGACATAATC
AAAAGTGCAGGCGAAGTGGTTTTGACTCGTTTACTTGAATCGATGAAGCAGAAAGTTAAC
AGTAAACTTCTTGAAGATTACAGAGCTTATGCAAAAGAAAAAGCCAGCTTCAGTCAAGGA
AAGCAGGCAGCTTCGGTCTAAACTTGNGAGCTTGTTAAATGTGTATAACAATACTTTGAT
AGACCAGCCTTTCTCTGATGGCATAAGGGCATTGTTAAAGCAAATTGTATCGCGTCTAAT
ATGTTCACATCAGCAGGATACCCGACAAGAGGTTGCACTCCCCACATGTGTTGAAGCAGT
CAAGGTGGAACGACCTCGAAGTTTCTTCACATGCACTACTTGCTGTGCTATCTCAAGTTT
TTTCAAGAGGGCAACCCCAACAGAACTCTCACATGCTGGAGGGTAGTTTGTAAGGCTCCC
ATTTGCATTCTTCTGCCTAGG
■■Homology search results ■■ -
sp_hit_id Q5XHH9
Definition sp|Q5XHH9|TT39B_XENLA Tetratricopeptide repeat protein 39B OS=Xenopus laevis
Align length 33
Score (bit) 33.9
E-value 0.57
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914610|Adiantum capillus-veneris mRNA, clone:
YMU001_000060_H11.
         (561 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5XHH9|TT39B_XENLA Tetratricopeptide repeat protein 39B OS=Xe...    34   0.57 
sp|Q9Z7G7|EX5B_CHLPN Exodeoxyribonuclease V beta chain OS=Chlamy...    30   8.1  

>sp|Q5XHH9|TT39B_XENLA Tetratricopeptide repeat protein 39B
           OS=Xenopus laevis GN=ttc39b PE=2 SV=1
          Length = 586

 Score = 33.9 bits (76), Expect = 0.57
 Identities = 15/33 (45%), Positives = 25/33 (75%), Gaps = 2/33 (6%)
 Frame = +1

Query: 94  LALIPEDIIKSAGE--VVLTRLLESMKQKVNSK 186
           L+++PED++K+ GE  V L R +ES+KQ++  K
Sbjct: 375 LSMLPEDVVKTTGEDIVALFRQVESLKQRIAGK 407


>sp|Q9Z7G7|EX5B_CHLPN Exodeoxyribonuclease V beta chain OS=Chlamydia
            pneumoniae GN=recB PE=3 SV=2
          Length = 1050

 Score = 30.0 bits (66), Expect = 8.1
 Identities = 14/38 (36%), Positives = 25/38 (65%)
 Frame = +3

Query: 3    QGSFILRAKRRFFSTEGSFEDECDIGNSFILGIDTRGH 116
            QG   ++A R+F + +   +D+ ++G  FI GIDT+G+
Sbjct: 988  QGRIYVKAVRKFLN-QFEIDDDVELGVIFIRGIDTQGN 1024
tr_hit_id A9NZC5
Definition tr|A9NZC5|A9NZC5_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 79
Score (bit) 91.3
E-value 3.0e-17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914610|Adiantum capillus-veneris mRNA, clone:
YMU001_000060_H11.
         (561 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NZC5|A9NZC5_PICSI Putative uncharacterized protein OS=Picea...    91   3e-17
tr|A7PN00|A7PN00_VITVI Chromosome chr14 scaffold_21, whole genom...    82   2e-14
tr|Q9FLY2|Q9FLY2_ARATH Arabidopsis thaliana genomic DNA, chromos...    75   2e-12
tr|Q8GWM5|Q8GWM5_ARATH Putative uncharacterized protein At5g3953...    75   2e-12
tr|Q8L9Q2|Q8L9Q2_ARATH Putative uncharacterized protein OS=Arabi...    65   3e-09
tr|Q0WW43|Q0WW43_ARATH Putative uncharacterized protein At5g3952...    65   3e-09
tr|Q8S7U5|Q8S7U5_ORYSJ Putative uncharacterized protein OSJNBa00...    61   5e-08
tr|Q10R85|Q10R85_ORYSJ Os03g0168300 protein OS=Oryza sativa subs...    61   5e-08
tr|Q10R84|Q10R84_ORYSJ Expressed protein OS=Oryza sativa subsp. ...    61   5e-08
tr|B8APA2|B8APA2_ORYSI Putative uncharacterized protein OS=Oryza...    61   5e-08
tr|Q0D4D9|Q0D4D9_ORYSJ Os07g0633000 protein OS=Oryza sativa subs...    58   3e-07
tr|A3BMI6|A3BMI6_ORYSJ Putative uncharacterized protein OS=Oryza...    58   3e-07
tr|Q9FLY3|Q9FLY3_ARATH Arabidopsis thaliana genomic DNA, chromos...    56   2e-06
tr|B4VX15|B4VX15_9CYAN Putative uncharacterized protein OS=Micro...    53   1e-05
tr|Q3AMU1|Q3AMU1_SYNSC Putative uncharacterized protein OS=Synec...    52   2e-05
tr|B7K830|B7K830_9CHRO Putative uncharacterized protein OS=Cyano...    52   2e-05
tr|B4AVQ9|B4AVQ9_9CHRO Putative uncharacterized protein OS=Cyano...    52   2e-05
tr|B4C237|B4C237_9CHRO Putative uncharacterized protein OS=Cyano...    48   3e-04
tr|B7K100|B7K100_SYNP8 Putative uncharacterized protein OS=Synec...    47   7e-04
tr|B0JJJ0|B0JJJ0_MICAN Putative uncharacterized protein OS=Micro...    47   0.001
tr|Q3AW48|Q3AW48_SYNS9 Putative uncharacterized protein OS=Synec...    45   0.002
tr|A8YKW4|A8YKW4_MICAE Similar to tr|P73665|P73665 OS=Microcysti...    45   0.003
tr|B4WS25|B4WS25_9SYNE Putative uncharacterized protein OS=Synec...    44   0.006
tr|B1X0K4|B1X0K4_CYAA5 Putative uncharacterized protein OS=Cyano...    44   0.008
tr|A3AEI6|A3AEI6_ORYSJ Putative uncharacterized protein OS=Oryza...    44   0.008
tr|Q3MDM9|Q3MDM9_ANAVT Putative uncharacterized protein OS=Anaba...    43   0.010
tr|B2J5B5|B2J5B5_NOSP7 Putative uncharacterized protein OS=Nosto...    43   0.010
tr|Q060Z6|Q060Z6_9SYNE Putative uncharacterized protein OS=Synec...    43   0.014
tr|A0ZFC5|A0ZFC5_NODSP Putative uncharacterized protein OS=Nodul...    42   0.018
tr|A0YL68|A0YL68_9CYAN Putative uncharacterized protein OS=Lyngb...    42   0.023

>tr|A9NZC5|A9NZC5_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 254

 Score = 91.3 bits (225), Expect = 3e-17
 Identities = 45/79 (56%), Positives = 61/79 (77%)
 Frame = +1

Query: 1   VKGVLFSEQRGVSSRLRGHLKMSVTLVIPSSLALIPEDIIKSAGEVVLTRLLESMKQKVN 180
           V+G L+SE  GV SRL+G ++M+V+ V+P +LA+IPEDI+KS G  VL +LLE+MK +VN
Sbjct: 164 VRGALYSENNGVRSRLKGLMEMTVSFVLPPALAVIPEDILKSIGHAVLIQLLENMKGRVN 223

Query: 181 SKLLEDYRAYAKEKASFSQ 237
            KLL DYR Y+KE+   SQ
Sbjct: 224 RKLLADYRDYSKEQKIASQ 242


>tr|A7PN00|A7PN00_VITVI Chromosome chr14 scaffold_21, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00021010001
           PE=4 SV=1
          Length = 251

 Score = 82.4 bits (202), Expect = 2e-14
 Identities = 39/74 (52%), Positives = 54/74 (72%)
 Frame = +1

Query: 1   VKGVLFSEQRGVSSRLRGHLKMSVTLVIPSSLALIPEDIIKSAGEVVLTRLLESMKQKVN 180
           VKG L+ E++ + SRL+G L+MS++ V+P  LAL+PED ++S  E VL RLLE+MK KVN
Sbjct: 173 VKGALYPERQAMQSRLKGQLEMSISFVLPPVLALVPEDGLRSVAESVLKRLLENMKHKVN 232

Query: 181 SKLLEDYRAYAKEK 222
             LL DY  + K+K
Sbjct: 233 GSLLADYNEFRKQK 246


>tr|Q9FLY2|Q9FLY2_ARATH Arabidopsis thaliana genomic DNA, chromosome
           5, P1 clone:MUL8 OS=Arabidopsis thaliana PE=4 SV=1
          Length = 161

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 34/74 (45%), Positives = 51/74 (68%)
 Frame = +1

Query: 1   VKGVLFSEQRGVSSRLRGHLKMSVTLVIPSSLALIPEDIIKSAGEVVLTRLLESMKQKVN 180
           VKG L+ ++RG  +RLRG L+M+++ V+P  L L+PED+ ++    VLT L+E+MK KVN
Sbjct: 84  VKGALYPDRRGKHTRLRGQLEMNISFVLPPVLELVPEDVRRNLANAVLTGLVENMKHKVN 143

Query: 181 SKLLEDYRAYAKEK 222
             LL DY  +  E+
Sbjct: 144 GSLLSDYSRFKNER 157


>tr|Q8GWM5|Q8GWM5_ARATH Putative uncharacterized protein
           At5g39530/MUL8_210 (Putative uncharacterized protein
           At5g39530) OS=Arabidopsis thaliana GN=At5g39530/MUL8_210
           PE=2 SV=1
          Length = 239

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 34/74 (45%), Positives = 51/74 (68%)
 Frame = +1

Query: 1   VKGVLFSEQRGVSSRLRGHLKMSVTLVIPSSLALIPEDIIKSAGEVVLTRLLESMKQKVN 180
           VKG L+ ++RG  +RLRG L+M+++ V+P  L L+PED+ ++    VLT L+E+MK KVN
Sbjct: 162 VKGALYPDRRGKHTRLRGQLEMNISFVLPPVLELVPEDVRRNLANAVLTGLVENMKHKVN 221

Query: 181 SKLLEDYRAYAKEK 222
             LL DY  +  E+
Sbjct: 222 GSLLSDYSRFKNER 235


>tr|Q8L9Q2|Q8L9Q2_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 230

 Score = 64.7 bits (156), Expect = 3e-09
 Identities = 28/74 (37%), Positives = 50/74 (67%)
 Frame = +1

Query: 1   VKGVLFSEQRGVSSRLRGHLKMSVTLVIPSSLALIPEDIIKSAGEVVLTRLLESMKQKVN 180
           VKG L+ ++RG  +RL+G L+ +++ V+PS LAL+PED+ ++    +L  L+++MK +V 
Sbjct: 154 VKGALYPDRRGRHTRLKGRLETTISFVLPSVLALVPEDVRRNMANAILAGLVDNMKHRVI 213

Query: 181 SKLLEDYRAYAKEK 222
             L+ DY  +  E+
Sbjct: 214 ESLVADYSKFKYER 227


>tr|Q0WW43|Q0WW43_ARATH Putative uncharacterized protein At5g39520
           OS=Arabidopsis thaliana GN=At5g39520 PE=2 SV=1
          Length = 230

 Score = 64.7 bits (156), Expect = 3e-09
 Identities = 28/74 (37%), Positives = 50/74 (67%)
 Frame = +1

Query: 1   VKGVLFSEQRGVSSRLRGHLKMSVTLVIPSSLALIPEDIIKSAGEVVLTRLLESMKQKVN 180
           VKG L+ ++RG  +RL+G L+ +++ V+PS LAL+PED+ ++    +L  L+++MK +V 
Sbjct: 154 VKGALYPDRRGRHTRLKGRLETTISFVLPSVLALVPEDVRRNMANAILAGLVDNMKHRVI 213

Query: 181 SKLLEDYRAYAKEK 222
             L+ DY  +  E+
Sbjct: 214 ESLVADYSKFKYER 227


>tr|Q8S7U5|Q8S7U5_ORYSJ Putative uncharacterized protein
           OSJNBa0091P11.30 OS=Oryza sativa subsp. japonica
           GN=OSJNBa0091P11.30 PE=4 SV=1
          Length = 260

 Score = 60.8 bits (146), Expect = 5e-08
 Identities = 32/74 (43%), Positives = 46/74 (62%)
 Frame = +1

Query: 1   VKGVLFSEQRGVSSRLRGHLKMSVTLVIPSSLALIPEDIIKSAGEVVLTRLLESMKQKVN 180
           V+G L+    G  S LRGH++MSV   +P  LAL+PE +I+  GE VL +L   MKQ  +
Sbjct: 180 VRGSLYPRPEGRKS-LRGHVEMSVGFNLPPVLALVPEGVIRGVGETVLRQLALQMKQDFD 238

Query: 181 SKLLEDYRAYAKEK 222
           + L  D++ Y +EK
Sbjct: 239 NGLAADFKRYRREK 252


>tr|Q10R85|Q10R85_ORYSJ Os03g0168300 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0168300 PE=2 SV=1
          Length = 280

 Score = 60.8 bits (146), Expect = 5e-08
 Identities = 32/74 (43%), Positives = 46/74 (62%)
 Frame = +1

Query: 1   VKGVLFSEQRGVSSRLRGHLKMSVTLVIPSSLALIPEDIIKSAGEVVLTRLLESMKQKVN 180
           V+G L+    G  S LRGH++MSV   +P  LAL+PE +I+  GE VL +L   MKQ  +
Sbjct: 200 VRGSLYPRPEGRKS-LRGHVEMSVGFNLPPVLALVPEGVIRGVGETVLRQLALQMKQDFD 258

Query: 181 SKLLEDYRAYAKEK 222
           + L  D++ Y +EK
Sbjct: 259 NGLAADFKRYRREK 272


>tr|Q10R84|Q10R84_ORYSJ Expressed protein OS=Oryza sativa subsp.
           japonica GN=LOC_Os03g07200 PE=4 SV=1
          Length = 313

 Score = 60.8 bits (146), Expect = 5e-08
 Identities = 32/74 (43%), Positives = 46/74 (62%)
 Frame = +1

Query: 1   VKGVLFSEQRGVSSRLRGHLKMSVTLVIPSSLALIPEDIIKSAGEVVLTRLLESMKQKVN 180
           V+G L+    G  S LRGH++MSV   +P  LAL+PE +I+  GE VL +L   MKQ  +
Sbjct: 233 VRGSLYPRPEGRKS-LRGHVEMSVGFNLPPVLALVPEGVIRGVGETVLRQLALQMKQDFD 291

Query: 181 SKLLEDYRAYAKEK 222
           + L  D++ Y +EK
Sbjct: 292 NGLAADFKRYRREK 305


>tr|B8APA2|B8APA2_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_10173 PE=4 SV=1
          Length = 280

 Score = 60.8 bits (146), Expect = 5e-08
 Identities = 32/74 (43%), Positives = 46/74 (62%)
 Frame = +1

Query: 1   VKGVLFSEQRGVSSRLRGHLKMSVTLVIPSSLALIPEDIIKSAGEVVLTRLLESMKQKVN 180
           V+G L+    G  S LRGH++MSV   +P  LAL+PE +I+  GE VL +L   MKQ  +
Sbjct: 200 VRGSLYPRPEGRKS-LRGHVEMSVGFNLPPVLALVPEGVIRGVGETVLRQLALQMKQDFD 258

Query: 181 SKLLEDYRAYAKEK 222
           + L  D++ Y +EK
Sbjct: 259 NGLAADFKRYRREK 272