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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914621
Clone id YMU001_000061_A11
Library
Length 596
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000061_A11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AAAGATGCGCAACGCATCGCAATGAGATCATACCAAACATAAAATCCACACAGGGCTTCA
TACCTGTGAGACTTGGGTAGAGCATAATGTGCCAAACAATCCCTTGCAGGATGCAAACAT
AATTAGCACACCCCATCAAAATTAGGGCTGTTTTATTTTCCAGCAATAATGGGAGGCCTT
ACATGCTGGTGTGTGTATCATACTGTCTCTATACAACATCACAAAGATAGGAAAAATGCC
TCAGACAGGATACCTACTTTTTACAAAGTTGAAAGAATCATTCTACTCCTCATCAATTTG
CTTCAGTCTTACATTTGAAGCAGAACACTACTTATCTTTCTCAGCTCAGCAAGCGCTGAC
AATGCAGTTAAATGACCCTTTCCATTCAGCAAGGCCTTTGACAAATTTTCAGCTCTCTCC
CTGTAAGCTGAAATGGCCCCATCCATTGTTAAGCTAGAGAGAGCACCCTCAATTACCTGA
ATGCTTTCGGCCATTGACTGACCAAGCGTTTGCAAGACGGNCTTGGAGTGTTTCCCCTTG
GTGACCTTAACTTCTGACTCATTGACAAGACCTTCATTTGCTTCTATCGAATCTGA
■■Homology search results ■■ -
sp_hit_id Q663K1
Definition sp|Q663K1|YOPN_YERPS Outer membrane protein yopN OS=Yersinia pseudotuberculosis
Align length 26
Score (bit) 30.0
E-value 9.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914621|Adiantum capillus-veneris mRNA, clone:
YMU001_000061_A11.
         (596 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q663K1|YOPN_YERPS Outer membrane protein yopN OS=Yersinia pse...    30   9.2  
sp|P68640|YOPN_YERPE Outer membrane protein yopN OS=Yersinia pes...    30   9.2  
sp|P16945|YOPN_YEREN Outer membrane protein yopN OS=Yersinia ent...    30   9.2  
sp|Q9Z8J6|Y347_CHLPN Probable metal transport system membrane pr...    30   9.2  

>sp|Q663K1|YOPN_YERPS Outer membrane protein yopN OS=Yersinia
           pseudotuberculosis GN=yopN PE=1 SV=3
          Length = 293

 Score = 30.0 bits (66), Expect = 9.2
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -1

Query: 527 SKXVLQTLGQSMAESIQVIEGALSSL 450
           S+ V QTLGQ   ES+Q++ G L S+
Sbjct: 24  SQIVNQTLGQFRGESVQIVSGTLQSI 49


>sp|P68640|YOPN_YERPE Outer membrane protein yopN OS=Yersinia pestis
           GN=yopN PE=1 SV=2
          Length = 293

 Score = 30.0 bits (66), Expect = 9.2
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -1

Query: 527 SKXVLQTLGQSMAESIQVIEGALSSL 450
           S+ V QTLGQ   ES+Q++ G L S+
Sbjct: 24  SQIVNQTLGQFRGESVQIVSGTLQSI 49


>sp|P16945|YOPN_YEREN Outer membrane protein yopN OS=Yersinia
           enterocolitica GN=yopN PE=2 SV=3
          Length = 293

 Score = 30.0 bits (66), Expect = 9.2
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -1

Query: 527 SKXVLQTLGQSMAESIQVIEGALSSL 450
           S+ V QTLGQ   ES+Q++ G L S+
Sbjct: 24  SQIVNQTLGQFRGESVQIVSGTLQSI 49


>sp|Q9Z8J6|Y347_CHLPN Probable metal transport system membrane
           protein CPn_0347/CP_0413/CPj0347/CpB0354 OS=Chlamydia
           pneumoniae GN=CPn_0347 PE=3 SV=1
          Length = 448

 Score = 30.0 bits (66), Expect = 9.2
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
 Frame = +2

Query: 212 YNITKIGKMPQTGYLLFTKLKESFYSSSICFS------LTFEAEHYLSFSAQQALTMQLN 373
           Y +TK G+      +   +L ES+  +S+ FS      L  E EH L+      LT  LN
Sbjct: 371 YRLTKKGRSEALRLVRAHRLWESYLVNSLDFSKESVHELAEEIEHVLTEELDHTLTEILN 430

Query: 374 DP 379
           DP
Sbjct: 431 DP 432
tr_hit_id Q84Z87
Definition tr|Q84Z87|Q84Z87_ORYSJ Os08g0518100 protein OS=Oryza sativa subsp. japonica
Align length 97
Score (bit) 55.1
E-value 3.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914621|Adiantum capillus-veneris mRNA, clone:
YMU001_000061_A11.
         (596 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q84Z87|Q84Z87_ORYSJ Os08g0518100 protein OS=Oryza sativa subs...    55   3e-06
tr|B8B8T2|B8B8T2_ORYSI Putative uncharacterized protein OS=Oryza...    55   3e-06
tr|A7QXM9|A7QXM9_VITVI Chromosome undetermined scaffold_226, who...    54   7e-06
tr|Q70AJ0|Q70AJ0_WHEAT Putative microtubule-associated protein (...    53   1e-05
tr|Q9XHE5|Q9XHE5_ARATH Microtubule-associated protein OS=Arabido...    51   6e-05
tr|Q9SZR5|Q9SZR5_ARATH Putative uncharacterized protein F27B13.1...    51   6e-05
tr|Q56Z93|Q56Z93_ARATH Putative uncharacterized protein At4g2995...    51   6e-05
tr|A9PK16|A9PK16_POPJC Putative uncharacterized protein OS=Popul...    50   8e-05
tr|Q5QVF8|Q5QVF8_IDILO Outer membrane protein OS=Idiomarina loih...    39   0.23 
tr|B7ZZV7|B7ZZV7_MAIZE Putative uncharacterized protein OS=Zea m...    39   0.23 
tr|B4PMX9|B4PMX9_DROYA GE26136 OS=Drosophila yakuba GN=GE26136 P...    34   5.6  
tr|Q9YFS4|Q9YFS4_AERPE Putative uncharacterized protein OS=Aerop...    34   5.6  
tr|A6AG58|A6AG58_VIBCH Fumarate hydratase, class II, aerobic OS=...    33   9.5  
tr|A5KW72|A5KW72_9GAMM Putative uncharacterized protein OS=Vibri...    33   9.5  

>tr|Q84Z87|Q84Z87_ORYSJ Os08g0518100 protein OS=Oryza sativa subsp.
            japonica GN=P0700D12.119 PE=2 SV=1
          Length = 834

 Score = 55.1 bits (131), Expect = 3e-06
 Identities = 39/97 (40%), Positives = 52/97 (53%), Gaps = 4/97 (4%)
 Frame = -1

Query: 590  SIEANEGLVNESEVKVTKGKHSKXV---LQTLGQSMAESIQVIEGALSS-LTMDGAISAY 423
            S   ++G  N S   V      K V   L+ LGQ+M E+IQVIE A        G +   
Sbjct: 745  SCSPSDGNSNNSRGSVKLASGDKKVMGSLKNLGQNMLENIQVIESAFQQDRGQPGPV--- 801

Query: 422  RERAENLSKALLNGKGHLTALSALAELRKISSVLLQM 312
                EN S  +L GKG +TA++AL ELRKIS++L +M
Sbjct: 802  ----ENFSNNILGGKGQVTAMAALTELRKISNLLSEM 834


>tr|B8B8T2|B8B8T2_ORYSI Putative uncharacterized protein OS=Oryza
            sativa subsp. indica GN=OsI_29896 PE=4 SV=1
          Length = 834

 Score = 55.1 bits (131), Expect = 3e-06
 Identities = 39/97 (40%), Positives = 52/97 (53%), Gaps = 4/97 (4%)
 Frame = -1

Query: 590  SIEANEGLVNESEVKVTKGKHSKXV---LQTLGQSMAESIQVIEGALSS-LTMDGAISAY 423
            S   ++G  N S   V      K V   L+ LGQ+M E+IQVIE A        G +   
Sbjct: 745  SCSPSDGNSNNSRGSVKLASGDKKVMGSLKNLGQNMLENIQVIESAFQQDRGQPGPV--- 801

Query: 422  RERAENLSKALLNGKGHLTALSALAELRKISSVLLQM 312
                EN S  +L GKG +TA++AL ELRKIS++L +M
Sbjct: 802  ----ENFSNNILGGKGQVTAMAALTELRKISNLLSEM 834


>tr|A7QXM9|A7QXM9_VITVI Chromosome undetermined scaffold_226, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00009262001 PE=4 SV=1
          Length = 773

 Score = 53.9 bits (128), Expect = 7e-06
 Identities = 32/68 (47%), Positives = 42/68 (61%)
 Frame = -1

Query: 515 LQTLGQSMAESIQVIEGALSSLTMDGAISAYRERAENLSKALLNGKGHLTALSALAELRK 336
           L+ LGQSM E+IQVIE         G         EN SK ++ GKG +TA++AL ELRK
Sbjct: 712 LKNLGQSMLENIQVIESVFQQDRGQGG------SLENFSKNVIVGKGQVTAMAALKELRK 765

Query: 335 ISSVLLQM 312
           IS++L +M
Sbjct: 766 ISNLLSEM 773


>tr|Q70AJ0|Q70AJ0_WHEAT Putative microtubule-associated protein
           (Fragment) OS=Triticum aestivum GN=p0700D12.21 PE=2 SV=1
          Length = 127

 Score = 53.1 bits (126), Expect = 1e-05
 Identities = 40/100 (40%), Positives = 54/100 (54%), Gaps = 6/100 (6%)
 Frame = -1

Query: 593 DSIEAN--EGLVNESEVKVTKGKHSKXVLQT---LGQSMAESIQVIEGALSS-LTMDGAI 432
           D+++A+  EG  N            K V+ T   LGQSM E+IQVIE A     +  G +
Sbjct: 35  DAVDASCSEGNSNNPRGNTKLAAGDKKVMGTFKNLGQSMLENIQVIESAFQQDRSQPGPM 94

Query: 431 SAYRERAENLSKALLNGKGHLTALSALAELRKISSVLLQM 312
                  EN S  +L GKG +TA +AL ELRKIS++L +M
Sbjct: 95  -------ENFSNNILGGKGQVTATAALTELRKISNLLSEM 127


>tr|Q9XHE5|Q9XHE5_ARATH Microtubule-associated protein
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 682

 Score = 50.8 bits (120), Expect = 6e-05
 Identities = 37/80 (46%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
 Frame = -1

Query: 542 TKGKHSKXVLQTL---GQSMAESIQVIEGALSSLTMDGAISAYRERAENLSKALLNGKGH 372
           +KG   + V+ TL   G SM E IQVIE         G + A     ENLSK  L  KG 
Sbjct: 607 SKGDTDQNVMNTLKNLGNSMLEHIQVIESVFQQER--GQVQA--GLIENLSKNNLVEKGQ 662

Query: 371 LTALSALAELRKISSVLLQM 312
           +TA++AL ELRKIS++LL+M
Sbjct: 663 VTAMTALKELRKISNLLLEM 682


>tr|Q9SZR5|Q9SZR5_ARATH Putative uncharacterized protein F27B13.190
           (Putative uncharacterized protein At4g29950)
           OS=Arabidopsis thaliana GN=F27B13.190 PE=2 SV=1
          Length = 828

 Score = 50.8 bits (120), Expect = 6e-05
 Identities = 37/80 (46%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
 Frame = -1

Query: 542 TKGKHSKXVLQTL---GQSMAESIQVIEGALSSLTMDGAISAYRERAENLSKALLNGKGH 372
           +KG   + V+ TL   G SM E IQVIE         G + A     ENLSK  L  KG 
Sbjct: 753 SKGDTDQNVMNTLKNLGNSMLEHIQVIESVFQQER--GQVQA--GLIENLSKNNLVEKGQ 808

Query: 371 LTALSALAELRKISSVLLQM 312
           +TA++AL ELRKIS++LL+M
Sbjct: 809 VTAMTALKELRKISNLLLEM 828


>tr|Q56Z93|Q56Z93_ARATH Putative uncharacterized protein At4g29950
           (Fragment) OS=Arabidopsis thaliana GN=At4g29950 PE=2
           SV=1
          Length = 110

 Score = 50.8 bits (120), Expect = 6e-05
 Identities = 37/80 (46%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
 Frame = -1

Query: 542 TKGKHSKXVLQTL---GQSMAESIQVIEGALSSLTMDGAISAYRERAENLSKALLNGKGH 372
           +KG   + V+ TL   G SM E IQVIE         G + A     ENLSK  L  KG 
Sbjct: 35  SKGDTDQNVMNTLKNLGNSMLEHIQVIESVFQQER--GQVQA--GLIENLSKNNLVEKGQ 90

Query: 371 LTALSALAELRKISSVLLQM 312
           +TA++AL ELRKIS++LL+M
Sbjct: 91  VTAMTALKELRKISNLLLEM 110


>tr|A9PK16|A9PK16_POPJC Putative uncharacterized protein OS=Populus
           jackii PE=2 SV=1
          Length = 823

 Score = 50.4 bits (119), Expect = 8e-05
 Identities = 31/68 (45%), Positives = 41/68 (60%)
 Frame = -1

Query: 515 LQTLGQSMAESIQVIEGALSSLTMDGAISAYRERAENLSKALLNGKGHLTALSALAELRK 336
           L+  GQSM E IQ+IE         G + +     EN SK  L GKG +TA++AL ELRK
Sbjct: 762 LRNFGQSMLEHIQIIESVFQQDR--GQVGSL----ENFSKTALVGKGQVTAMTALKELRK 815

Query: 335 ISSVLLQM 312
           IS++L +M
Sbjct: 816 ISNLLSEM 823


>tr|Q5QVF8|Q5QVF8_IDILO Outer membrane protein OS=Idiomarina
           loihiensis GN=IL2154 PE=3 SV=1
          Length = 735

 Score = 38.9 bits (89), Expect = 0.23
 Identities = 23/62 (37%), Positives = 32/62 (51%)
 Frame = -1

Query: 563 NESEVKVTKGKHSKXVLQTLGQSMAESIQVIEGALSSLTMDGAISAYRERAENLSKALLN 384
           NE EVK T G H++  L+  GQ+       I GA ++L  DG        AEN +K L+ 
Sbjct: 174 NEFEVKGTVGTHNQRDLKVSGQTALADNFYIGGAFATLNRDGFGEFVNTGAENYNKELMT 233

Query: 383 GK 378
           G+
Sbjct: 234 GR 235


>tr|B7ZZV7|B7ZZV7_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 740

 Score = 38.9 bits (89), Expect = 0.23
 Identities = 26/74 (35%), Positives = 40/74 (54%)
 Frame = -1

Query: 533 KHSKXVLQTLGQSMAESIQVIEGALSSLTMDGAISAYRERAENLSKALLNGKGHLTALSA 354
           K     L++LG+SM E+IQ IE  L   ++  ++       E L +A+        A++A
Sbjct: 674 KELSRTLRSLGESMVENIQDIELLLKPNSLSTSV-------EKLEEAIPGSTEQAKAVAA 726

Query: 353 LAELRKISSVLLQM 312
           L ELRKIS +L Q+
Sbjct: 727 LKELRKISDLLRQI 740