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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914622
Clone id YMU001_000061_A12
Library
Length 583
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000061_A12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TGATGTCAAAAGTCCTCCTTTGCCAAAGACACAATGCCACAAACTTCCCATTATCACTGC
CCCCTGCCTCTTCATACATTCCACGCACTCTTCCTCCACCCCTTTGTACCCACTTTTTTC
TCTTCAAGATTTTTCCATTTTGGACCTTCCTTTGATATGGACACATCCCCTCTTCCATTG
TGCCCTCCACTCTAGCCCTTACCTCTTACCCGAGCTTTGGTGTCTGTCTCTGGCGCTTTC
ATTGAGTAGTCCTCCCCGGCAGCTTCACAGAACAAAGATAAGTGATGATGGCCTTGTGCC
TGTCTATATGCGGTTACATCTCTTGCGCTGCTTTGGGTCTAAAATTTCTTTATTGGGAAG
CCGCCATCAATCTATGCTCTCCTACTATGTCCCATCAAAAATGGAGGAAACATGGACTGA
GGAGGTCATGGCATCATATTGCAAGTAGAAGTGGTCAACCCCTCTTTGTAGGTATGTGTT
TGCACTTCTGTGAAATGCATATTTACCAAGCTGGTTTCACATGGGCGGTTCATGTACATA
GTAGATGGGTGTATTCATTTCATGATAATAATCTCATGAGTAC
■■Homology search results ■■ -
sp_hit_id P84023
Definition sp|P84023|SMAD3_CHICK Mothers against decapentaplegic homolog 3 OS=Gallus gallus
Align length 20
Score (bit) 31.2
E-value 3.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914622|Adiantum capillus-veneris mRNA, clone:
YMU001_000061_A12.
         (583 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P84023|SMAD3_CHICK Mothers against decapentaplegic homolog 3 ...    31   3.9  
sp|O70436|SMAD2_RAT Mothers against decapentaplegic homolog 2 OS...    31   3.9  
sp|Q5R7C0|SMAD2_PONAB Mothers against decapentaplegic homolog 2 ...    31   3.9  
sp|Q62432|SMAD2_MOUSE Mothers against decapentaplegic homolog 2 ...    31   3.9  
sp|Q15796|SMAD2_HUMAN Mothers against decapentaplegic homolog 2 ...    31   3.9  
sp|Q1W668|SMAD2_BOVIN Mothers against decapentaplegic homolog 2 ...    31   3.9  
sp|Q28542|OVGP1_SHEEP Oviduct-specific glycoprotein OS=Ovis arie...    31   5.1  
sp|A6WX78|RSMG_OCHA4 Ribosomal RNA small subunit methyltransfera...    30   6.7  
sp|O77438|FRIZ3_DROME Frizzled-3 OS=Drosophila melanogaster GN=f...    30   6.7  
sp|Q6ZR08|DNHD2_HUMAN Dynein heavy chain domain-containing prote...    30   6.7  
sp|Q9I9P9|SMAD2_DANRE Mothers against decapentaplegic homolog 2 ...    30   8.7  
sp|Q28042|OVGP1_BOVIN Oviduct-specific glycoprotein (Fragment) O...    30   8.7  
sp|Q6SZ87|NAT11_ARATH Nucleobase-ascorbate transporter 11 OS=Ara...    30   8.8  

>sp|P84023|SMAD3_CHICK Mothers against decapentaplegic homolog 3
           OS=Gallus gallus GN=SMAD3 PE=2 SV=1
          Length = 426

 Score = 31.2 bits (69), Expect = 3.9
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +3

Query: 39  TNFPLSLPPASSYIPRTLPP 98
           TNFP  + P S+YIP T PP
Sbjct: 164 TNFPAGIEPQSNYIPETPPP 183


>sp|O70436|SMAD2_RAT Mothers against decapentaplegic homolog 2
           OS=Rattus norvegicus GN=Smad2 PE=2 SV=1
          Length = 467

 Score = 31.2 bits (69), Expect = 3.9
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +3

Query: 39  TNFPLSLPPASSYIPRTLPP 98
           TNFP  + P S+YIP T PP
Sbjct: 204 TNFPAGIEPQSNYIPETPPP 223


>sp|Q5R7C0|SMAD2_PONAB Mothers against decapentaplegic homolog 2
           OS=Pongo abelii GN=SMAD2 PE=2 SV=1
          Length = 467

 Score = 31.2 bits (69), Expect = 3.9
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +3

Query: 39  TNFPLSLPPASSYIPRTLPP 98
           TNFP  + P S+YIP T PP
Sbjct: 204 TNFPAGIEPQSNYIPETPPP 223


>sp|Q62432|SMAD2_MOUSE Mothers against decapentaplegic homolog 2
           OS=Mus musculus GN=Smad2 PE=1 SV=2
          Length = 467

 Score = 31.2 bits (69), Expect = 3.9
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +3

Query: 39  TNFPLSLPPASSYIPRTLPP 98
           TNFP  + P S+YIP T PP
Sbjct: 204 TNFPAGIEPQSNYIPETPPP 223


>sp|Q15796|SMAD2_HUMAN Mothers against decapentaplegic homolog 2
           OS=Homo sapiens GN=SMAD2 PE=1 SV=1
          Length = 467

 Score = 31.2 bits (69), Expect = 3.9
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +3

Query: 39  TNFPLSLPPASSYIPRTLPP 98
           TNFP  + P S+YIP T PP
Sbjct: 204 TNFPAGIEPQSNYIPETPPP 223


>sp|Q1W668|SMAD2_BOVIN Mothers against decapentaplegic homolog 2
           OS=Bos taurus GN=SMAD2 PE=2 SV=1
          Length = 467

 Score = 31.2 bits (69), Expect = 3.9
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +3

Query: 39  TNFPLSLPPASSYIPRTLPP 98
           TNFP  + P S+YIP T PP
Sbjct: 204 TNFPAGIEPQSNYIPETPPP 223


>sp|Q28542|OVGP1_SHEEP Oviduct-specific glycoprotein OS=Ovis aries
           GN=OVGP1 PE=1 SV=1
          Length = 539

 Score = 30.8 bits (68), Expect = 5.1
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +3

Query: 39  TNFPLSLPPASSYIPRTLPPPLCTH 113
           TN+  S P ++S +PR L P LCTH
Sbjct: 29  TNWAFSRPGSASILPRDLDPFLCTH 53


>sp|A6WX78|RSMG_OCHA4 Ribosomal RNA small subunit methyltransferase
           G OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882
           / NCTC 12168) GN=rsmG PE=3 SV=1
          Length = 213

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 11/56 (19%)
 Frame = +3

Query: 345 FLYWEAAINLCSPTMSHQKWRKHGL-----------RRSWHHIASRSGQPLFVGMC 479
           F  W  AINL SP+  ++ W +H L            + W  I S  G P  V  C
Sbjct: 32  FRKWSKAINLASPSTLNELWTRHILDSAQLFPLASDAKHWLDIGSGGGFPGIVTAC 87


>sp|O77438|FRIZ3_DROME Frizzled-3 OS=Drosophila melanogaster GN=fz3
           PE=2 SV=2
          Length = 581

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 30/117 (25%), Positives = 39/117 (33%), Gaps = 9/117 (7%)
 Frame = +3

Query: 102 LCTHFFLFKIFPFWTFL*YGHIPSSIVPSTLALTSYPSFGVCLW---------RFH*VVL 254
           +C    LF +  FW        P    P       Y  F VC           R H V L
Sbjct: 245 VCFVLTLFALVTFWAEPTRFGYPER--PVLFLCLCYNLFSVCYLERIVFHNQARMHDVEL 302

Query: 255 PGSFTEQR*VMMALCLSICGYISCAALGLKFLYWEAAINLCSPTMSHQKWRKHGLRR 425
            G       ++   CL+   YI+ + L L    W     LC    SH+KW    L +
Sbjct: 303 QGRLMRPGCLLTPPCLA--SYITTSYLSLCAASWWLIFALCFYLSSHKKWSSEALEK 357


>sp|Q6ZR08|DNHD2_HUMAN Dynein heavy chain domain-containing protein
           2 OS=Homo sapiens GN=DNHD2 PE=2 SV=1
          Length = 1093

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +3

Query: 423 RSWHHIASRSGQPLFVGMCLHFCEMHIYQ 509
           +SW  I   S  P F G+  HFCE HIY+
Sbjct: 393 KSWEEICRASEFPAFRGLRQHFCE-HIYE 420
tr_hit_id A7SNZ4
Definition tr|A7SNZ4|A7SNZ4_NEMVE Predicted protein OS=Nematostella vectensis
Align length 45
Score (bit) 34.7
E-value 4.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914622|Adiantum capillus-veneris mRNA, clone:
YMU001_000061_A12.
         (583 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7SNZ4|A7SNZ4_NEMVE Predicted protein OS=Nematostella vectens...    35   4.0  
tr|A7S850|A7S850_NEMVE Predicted protein OS=Nematostella vectens...    35   4.0  
tr|A4RQB2|A4RQB2_MAGGR Predicted protein OS=Magnaporthe grisea G...    34   5.2  

>tr|A7SNZ4|A7SNZ4_NEMVE Predicted protein OS=Nematostella vectensis
           GN=v1g246481 PE=4 SV=1
          Length = 501

 Score = 34.7 bits (78), Expect = 4.0
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
 Frame = +3

Query: 309 CGYISCAALGL--KFLYWEAAINLCSPTMSHQKWRKHGLRR--SW 431
           CGYI    LGL  K   W   +N+C   +SH + R+H L+R  SW
Sbjct: 232 CGYIKYYYLGLHEKLKNWFRNLNMCRKMLSHWQEREHWLKRNTSW 276


>tr|A7S850|A7S850_NEMVE Predicted protein OS=Nematostella vectensis
           GN=v1g208262 PE=4 SV=1
          Length = 868

 Score = 34.7 bits (78), Expect = 4.0
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
 Frame = +3

Query: 309 CGYISCAALGL--KFLYWEAAINLCSPTMSHQKWRKHGLRR--SW 431
           CGYI    LGL  K   W   +N+C   +SH + R+H L+R  SW
Sbjct: 84  CGYIKYYYLGLHEKLKNWFRNLNMCRKMLSHWQEREHWLKRNTSW 128


>tr|A4RQB2|A4RQB2_MAGGR Predicted protein OS=Magnaporthe grisea
           GN=MGG_05765 PE=4 SV=1
          Length = 223

 Score = 34.3 bits (77), Expect = 5.2
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 315 YISCAALGLKFLYWEAAINLCSPTMSHQKWRKHGLRRSW 431
           Y +CAAL +  L W+AA + C+  +    W  + LRR W
Sbjct: 68  YHACAALFVSALGWDAAEDWCTAPVFGSPWEAYTLRRFW 106