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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914626
Clone id YMU001_000061_B04
Library
Length 541
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000061_B04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GAGTACCTGCGAGAGAGAGAGGCTCAATGTAACTCAAAATGATAATTGTATTATGGTTGA
GCTTGAACAACTTACAGTGAGTGTGTACAATGCCTCTTATATAGGCATAAAATAGATGAC
CTCATGGGTGACTTCATCAGATAATACATCATCCACTGTGTCAGTAGTCCTAGGTGGAAA
GTGGCCACATGCTACCACATGGGATACACATGCCCAATGCCATGTAGGCATCCTCAACAC
TAGAGAAGATGCGCACAAAGAAGCATAAGCGTAGGCCAAAGCCCACAGATCCCAACAATC
TGCAAATGATATTCTCATACAAGAATACCACTGTTGATCTAGTAGTATTATATGGCAATG
CCCTGGCTTCAACCCACTTGCTCACATAATAGGTAGCCATTATGATGTACCTACTTTTCC
TATAAGTTATTTCTTTGAATGGACCCATGAAGTCCAATTCCCATTGCATATATACTCCTA
ATGATCGTACTAGAGTCAGAGGTATCATGTCAGCTGCTGTTGGTCTTCCCACATGCTGAC
A
■■Homology search results ■■ -
sp_hit_id Q9BY71
Definition sp|Q9BY71|LRRC3_HUMAN Leucine-rich repeat-containing protein 3 OS=Homo sapiens
Align length 17
Score (bit) 32.0
E-value 2.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914626|Adiantum capillus-veneris mRNA, clone:
YMU001_000061_B04.
         (541 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9BY71|LRRC3_HUMAN Leucine-rich repeat-containing protein 3 O...    32   2.0  
sp|O67258|SYK_AQUAE Lysyl-tRNA synthetase OS=Aquifex aeolicus GN...    32   2.6  
sp|O42844|KCC2_SCHPO Calcium/calmodulin-dependent protein kinase...    30   5.8  
sp|Q92Q22|SYS_RHIME Seryl-tRNA synthetase OS=Rhizobium meliloti ...    30   7.6  
sp|Q46IK0|THIC_PROMT Thiamine biosynthesis protein thiC OS=Proch...    30   9.8  
sp|A2C559|THIC_PROM1 Thiamine biosynthesis protein thiC OS=Proch...    30   9.8  
sp|A0T0U3|YCF4_THAPS Photosystem I assembly protein ycf4 OS=Thal...    30   9.9  
sp|Q54ZW0|PHG1B_DICDI Putative phagocytic receptor 1b OS=Dictyos...    30   9.9  
sp|Q866Z6|GCNT3_SHEEP Beta-1,3-galactosyl-O-glycosyl-glycoprotei...    30   9.9  
sp|Q1M0V6|GCNT3_BUBBU Beta-1,3-galactosyl-O-glycosyl-glycoprotei...    30   9.9  
sp|Q7YQE1|GCNT3_BOVIN Beta-1,3-galactosyl-O-glycosyl-glycoprotei...    30   9.9  
sp|Q866Z5|GCNT3_BOSMU Beta-1,3-galactosyl-O-glycosyl-glycoprotei...    30   9.9  
sp|A4J5T7|CNPD_DESRM 2',3'-cyclic-nucleotide 2'-phosphodiesteras...    30   9.9  

>sp|Q9BY71|LRRC3_HUMAN Leucine-rich repeat-containing protein 3
           OS=Homo sapiens GN=LRRC3 PE=1 SV=1
          Length = 257

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1

Query: 190 CYHMGYTCPMPCRHPQH 240
           C H+G  CP PCR P H
Sbjct: 26  CLHLGAACPQPCRCPDH 42


>sp|O67258|SYK_AQUAE Lysyl-tRNA synthetase OS=Aquifex aeolicus
           GN=lysS PE=3 SV=1
          Length = 597

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
 Frame = -1

Query: 511 DMIPLTLVRSLGV----YMQWELDFMGPFKEITY 422
           DM    L ++LG     Y +WELDF  PFK++ Y
Sbjct: 382 DMFVYLLEKTLGTLKVKYGEWELDFSPPFKKVRY 415


>sp|O42844|KCC2_SCHPO Calcium/calmodulin-dependent protein kinase
           type II OS=Schizosaccharomyces pombe GN=cmk2 PE=1 SV=1
          Length = 504

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -2

Query: 222 WHWACVSHVVACGHFPPRTTDTVDDVLSDEVTHEVIYFMP 103
           W   CV H + CG FPP   + + D+ S  V  E  +  P
Sbjct: 277 WAMGCVLHTMLCG-FPPFFDENIKDLASKVVNGEFEFLSP 315


>sp|Q92Q22|SYS_RHIME Seryl-tRNA synthetase OS=Rhizobium meliloti
           GN=serS PE=3 SV=1
          Length = 427

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -1

Query: 322 LYENIICRLLGSVGFGLRLCFFVRIFSSVEDAYMALGMCIPCG 194
           L+  ++    G +GFG R  + + ++   +DAY  +  C  CG
Sbjct: 315 LHYRVMTLCTGDMGFGARKTYDLEVWLPGQDAYREISSCSVCG 357


>sp|Q46IK0|THIC_PROMT Thiamine biosynthesis protein thiC
           OS=Prochlorococcus marinus (strain NATL2A) GN=thiC PE=3
           SV=1
          Length = 466

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 15/36 (41%), Positives = 25/36 (69%), Gaps = 4/36 (11%)
 Frame = -3

Query: 170 GLLTQWMMYYLMKSPM--RSSILC-LYKRH-CTHSL 75
           G+L QWM+Y+  ++P+  R   +C ++KR+ CT SL
Sbjct: 199 GILAQWMLYHYKQNPLFTRFDDICEIFKRYDCTFSL 234


>sp|A2C559|THIC_PROM1 Thiamine biosynthesis protein thiC
           OS=Prochlorococcus marinus (strain NATL1A) GN=thiC PE=3
           SV=1
          Length = 466

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 15/36 (41%), Positives = 25/36 (69%), Gaps = 4/36 (11%)
 Frame = -3

Query: 170 GLLTQWMMYYLMKSPM--RSSILC-LYKRH-CTHSL 75
           G+L QWM+Y+  ++P+  R   +C ++KR+ CT SL
Sbjct: 199 GILAQWMLYHYKQNPLFTRFDDICEIFKRYDCTFSL 234


>sp|A0T0U3|YCF4_THAPS Photosystem I assembly protein ycf4
           OS=Thalassiosira pseudonana GN=ycf4 PE=3 SV=1
          Length = 181

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 13/54 (24%), Positives = 28/54 (51%)
 Frame = -1

Query: 385 VSKWVEARALPYNTTRSTVVFLYENIICRLLGSVGFGLRLCFFVRIFSSVEDAY 224
           +S +++   LP+  T + +VF+ + I+    G++ FGL +     +F  +   Y
Sbjct: 37  ISSYLKINLLPFANT-TELVFIPQGIVMMFYGTLSFGLSIYIMATLFWDIGSGY 89


>sp|Q54ZW0|PHG1B_DICDI Putative phagocytic receptor 1b
           OS=Dictyostelium discoideum GN=phg1b PE=2 SV=1
          Length = 587

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
 Frame = -1

Query: 409 YIIMATYYVSKWVEARALPYNTTRSTVVFLYENIICR----LLGSVGFGLRLCFFVRIFS 242
           Y I   YY+S         Y   ++T  F Y  I+C     LLG+VGF   L F  RI+ 
Sbjct: 530 YSIYYYYYISHM-------YGLLQATFYFTYMLIVCFFFFILLGTVGFYSSLIFVKRIYR 582

Query: 241 SVE 233
           +++
Sbjct: 583 NLK 585


>sp|Q866Z6|GCNT3_SHEEP Beta-1,3-galactosyl-O-glycosyl-glycoprotein
           beta-1,6-N-acetylglucosaminyltransferase 3 OS=Ovis aries
           GN=GCNT3 PE=3 SV=1
          Length = 440

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -2

Query: 219 HWACVSHVVACGHFPPRTTDTVDDVLSDEVTHEVIY 112
           HW   +H +    F PR  D V   L + + H+ IY
Sbjct: 401 HWILQNHHLLANKFDPRVDDNVLQCLEEYLRHKAIY 436


>sp|Q1M0V6|GCNT3_BUBBU Beta-1,3-galactosyl-O-glycosyl-glycoprotein
           beta-1,6-N-acetylglucosaminyltransferase 3 OS=Bubalus
           bubalis GN=GCNT3 PE=3 SV=1
          Length = 440

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -2

Query: 219 HWACVSHVVACGHFPPRTTDTVDDVLSDEVTHEVIY 112
           HW   +H +    F PR  D V   L + + H+ IY
Sbjct: 401 HWILQNHHLLANKFDPRVDDNVLQCLEEYLRHKAIY 436
tr_hit_id A5AP12
Definition tr|A5AP12|A5AP12_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 81
Score (bit) 65.5
E-value 2.0e-09
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914626|Adiantum capillus-veneris mRNA, clone:
YMU001_000061_B04.
         (541 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5AP12|A5AP12_VITVI Putative uncharacterized protein OS=Vitis...    65   2e-09
tr|A5APW4|A5APW4_VITVI Putative uncharacterized protein OS=Vitis...    64   4e-09
tr|Q2AA50|Q2AA50_ASPOF Retrotransposon gag protein OS=Asparagus ...    63   9e-09
tr|A5C692|A5C692_VITVI Putative uncharacterized protein OS=Vitis...    63   1e-08
tr|A5AFU5|A5AFU5_VITVI Putative uncharacterized protein OS=Vitis...    63   1e-08
tr|A5BTT2|A5BTT2_VITVI Putative uncharacterized protein OS=Vitis...    62   1e-08
tr|A5BA83|A5BA83_VITVI Putative uncharacterized protein OS=Vitis...    62   1e-08
tr|A5AS76|A5AS76_VITVI Putative uncharacterized protein OS=Vitis...    62   1e-08
tr|A5AFK5|A5AFK5_VITVI Putative uncharacterized protein OS=Vitis...    62   1e-08
tr|A5C0S0|A5C0S0_VITVI Putative uncharacterized protein OS=Vitis...    62   2e-08
tr|A5B960|A5B960_VITVI Putative uncharacterized protein OS=Vitis...    62   2e-08
tr|A5ACX9|A5ACX9_VITVI Putative uncharacterized protein OS=Vitis...    62   2e-08
tr|A5CBC9|A5CBC9_VITVI Putative uncharacterized protein OS=Vitis...    61   3e-08
tr|A5C049|A5C049_VITVI Putative uncharacterized protein OS=Vitis...    61   3e-08
tr|A5BD94|A5BD94_VITVI Putative uncharacterized protein OS=Vitis...    61   3e-08
tr|A5BFS9|A5BFS9_VITVI Putative uncharacterized protein OS=Vitis...    61   4e-08
tr|A5BUI8|A5BUI8_VITVI Putative uncharacterized protein OS=Vitis...    60   6e-08
tr|A5BHI2|A5BHI2_VITVI Putative uncharacterized protein OS=Vitis...    60   6e-08
tr|A5ANM7|A5ANM7_VITVI Putative uncharacterized protein OS=Vitis...    60   6e-08
tr|Q9MAR5|Q9MAR5_ARATH F28H19.8 protein OS=Arabidopsis thaliana ...    60   7e-08
tr|A5C7E9|A5C7E9_VITVI Putative uncharacterized protein OS=Vitis...    60   7e-08
tr|A5C1L9|A5C1L9_VITVI Putative uncharacterized protein OS=Vitis...    60   7e-08
tr|A5BNJ4|A5BNJ4_VITVI Putative uncharacterized protein OS=Vitis...    60   7e-08
tr|A5BJ46|A5BJ46_VITVI Putative uncharacterized protein OS=Vitis...    60   7e-08
tr|A5B2C7|A5B2C7_VITVI Putative uncharacterized protein OS=Vitis...    60   7e-08
tr|A5AWF5|A5AWF5_VITVI Putative uncharacterized protein OS=Vitis...    60   7e-08
tr|A5CBJ4|A5CBJ4_VITVI Putative uncharacterized protein OS=Vitis...    60   1e-07
tr|A5CA60|A5CA60_VITVI Putative uncharacterized protein OS=Vitis...    60   1e-07
tr|A5C6P4|A5C6P4_VITVI Putative uncharacterized protein OS=Vitis...    60   1e-07
tr|A5C105|A5C105_VITVI Putative uncharacterized protein OS=Vitis...    60   1e-07

>tr|A5AP12|A5AP12_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_022548 PE=4 SV=1
          Length = 730

 Score = 65.5 bits (158), Expect = 2e-09
 Identities = 34/81 (41%), Positives = 50/81 (61%)
 Frame = -1

Query: 541 CQHVGRPTAADMIPLTLVRSLGVYMQWELDFMGPFKEITYRKSRYIIMATYYVSKWVEAR 362
           CQ +G+ T  +M+PL  +  + ++  W++DFMGPF  +++  S YI++   YVSKWVEA 
Sbjct: 145 CQRLGKLTRRNMMPLNPILIVDLFYVWDIDFMGPF-PMSFGYS-YILVRVDYVSKWVEAV 202

Query: 361 ALPYNTTRSTVVFLYENIICR 299
              YN  R  + FL ENI  R
Sbjct: 203 PCKYNDHRVVIKFLKENIFSR 223


>tr|A5APW4|A5APW4_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_013484 PE=4 SV=1
          Length = 1536

 Score = 64.3 bits (155), Expect = 4e-09
 Identities = 32/81 (39%), Positives = 49/81 (60%)
 Frame = -1

Query: 541  CQHVGRPTAADMIPLTLVRSLGVYMQWELDFMGPFKEITYRKSRYIIMATYYVSKWVEAR 362
            CQ +G+ T  +M+PL  +  + ++  W +DFMGPF  +++  S YI++  YY+SKWVE  
Sbjct: 935  CQRLGKLTRGNMMPLNPILIVDLFYVWGIDFMGPFS-MSFGYS-YILVGVYYISKWVETV 992

Query: 361  ALPYNTTRSTVVFLYENIICR 299
               +N  R  + FL ENI  R
Sbjct: 993  PCKHNDHRVVLKFLKENIFSR 1013


>tr|Q2AA50|Q2AA50_ASPOF Retrotransposon gag protein OS=Asparagus
            officinalis GN=19.t00014 PE=4 SV=1
          Length = 1788

 Score = 63.2 bits (152), Expect = 9e-09
 Identities = 34/81 (41%), Positives = 48/81 (59%)
 Frame = -1

Query: 541  CQHVGRPTAADMIPLTLVRSLGVYMQWELDFMGPFKEITYRKSRYIIMATYYVSKWVEAR 362
            CQ +G+ T  +M+PL  + S+ ++  W +DFMGPF       + YI++A  Y+SKWVEA 
Sbjct: 1400 CQLLGKVTRRNMMPLQPILSVELFDLWGIDFMGPFPNSF--GNVYILVAVEYMSKWVEAV 1457

Query: 361  ALPYNTTRSTVVFLYENIICR 299
            A   N  +  V FL ENI  R
Sbjct: 1458 ACKTNDNKVVVKFLKENIFAR 1478


>tr|A5C692|A5C692_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_026847 PE=4 SV=1
          Length = 2036

 Score = 62.8 bits (151), Expect = 1e-08
 Identities = 32/81 (39%), Positives = 49/81 (60%)
 Frame = -1

Query: 541  CQHVGRPTAADMIPLTLVRSLGVYMQWELDFMGPFKEITYRKSRYIIMATYYVSKWVEAR 362
            CQ +G+ T  + +P+ L+  + ++  W +DFMGPF  +++  S YI++   YVSKWVEA 
Sbjct: 1791 CQRLGKLTKRNQMPMNLILIVDLFYVWGIDFMGPF-PMSFGNS-YILVGLDYVSKWVEAI 1848

Query: 361  ALPYNTTRSTVVFLYENIICR 299
               +N  R  + FL ENI  R
Sbjct: 1849 PCKHNDNRVVLKFLKENIFSR 1869


>tr|A5AFU5|A5AFU5_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_020138 PE=4 SV=1
          Length = 667

 Score = 62.8 bits (151), Expect = 1e-08
 Identities = 34/81 (41%), Positives = 49/81 (60%)
 Frame = -1

Query: 541 CQHVGRPTAADMIPLTLVRSLGVYMQWELDFMGPFKEITYRKSRYIIMATYYVSKWVEAR 362
           CQ +G+ T  +M+PL  +  + V+  W +DFMGPF  +++R S YI++   YVSKWVEA 
Sbjct: 345 CQRLGKLTXRNMMPLNPILIVDVFDVWGIDFMGPF-PMSFRHS-YILVGVDYVSKWVEAI 402

Query: 361 ALPYNTTRSTVVFLYENIICR 299
               N  +  + FL ENI  R
Sbjct: 403 PCRSNNHKVVLKFLKENIFAR 423


>tr|A5BTT2|A5BTT2_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_003082 PE=4 SV=1
          Length = 1680

 Score = 62.4 bits (150), Expect = 1e-08
 Identities = 34/81 (41%), Positives = 49/81 (60%)
 Frame = -1

Query: 541  CQHVGRPTAADMIPLTLVRSLGVYMQWELDFMGPFKEITYRKSRYIIMATYYVSKWVEAR 362
            CQ +G+ T  +M+PL  +  + V+  WE+DFMGPF  +++  S YI++   YVSKWVEA 
Sbjct: 1358 CQRLGKLTRRNMMPLNPILIVDVFDVWEIDFMGPF-PMSFGYS-YILVGVDYVSKWVEAI 1415

Query: 361  ALPYNTTRSTVVFLYENIICR 299
                N  +  + FL ENI  R
Sbjct: 1416 PCRSNDHKVVLKFLMENIFAR 1436


>tr|A5BA83|A5BA83_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_041587 PE=4 SV=1
          Length = 2035

 Score = 62.4 bits (150), Expect = 1e-08
 Identities = 31/81 (38%), Positives = 49/81 (60%)
 Frame = -1

Query: 541  CQHVGRPTAADMIPLTLVRSLGVYMQWELDFMGPFKEITYRKSRYIIMATYYVSKWVEAR 362
            CQ +G+ T  + +P+  +  + ++  W +DFMGPF  +++  + YI++  YYVSKWVEA 
Sbjct: 1713 CQRLGKLTKRNQMPMNPILIVDLFYVWGIDFMGPFP-MSFGNT-YILVGVYYVSKWVEAI 1770

Query: 361  ALPYNTTRSTVVFLYENIICR 299
               +N  R  + FL ENI  R
Sbjct: 1771 PYKHNDHRVVLKFLKENIFSR 1791


>tr|A5AS76|A5AS76_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_027006 PE=4 SV=1
          Length = 1103

 Score = 62.4 bits (150), Expect = 1e-08
 Identities = 34/81 (41%), Positives = 48/81 (59%)
 Frame = -1

Query: 541  CQHVGRPTAADMIPLTLVRSLGVYMQWELDFMGPFKEITYRKSRYIIMATYYVSKWVEAR 362
            CQ +G  T  +M+PLT +  + ++  W +DFMGPF  +++  S YI++   YVSKWVEA 
Sbjct: 781  CQRLGELTRRNMMPLTPILIVNLFYVWGIDFMGPF-PMSFGYS-YILVGVDYVSKWVEAV 838

Query: 361  ALPYNTTRSTVVFLYENIICR 299
               +N  R    FL ENI  R
Sbjct: 839  PCKHNDHRVVFKFLKENIFSR 859


>tr|A5AFK5|A5AFK5_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_023313 PE=4 SV=1
          Length = 1324

 Score = 62.4 bits (150), Expect = 1e-08
 Identities = 33/81 (40%), Positives = 46/81 (56%)
 Frame = -1

Query: 541  CQHVGRPTAADMIPLTLVRSLGVYMQWELDFMGPFKEITYRKSRYIIMATYYVSKWVEAR 362
            CQ VG+ T  +M+PL  +  + ++  W +DFMGPF  +      YI++   YVSKWVEA 
Sbjct: 1081 CQRVGKLTRRNMMPLNPILIVDLFYIWGIDFMGPF--LRSFDHSYILVGVDYVSKWVEAV 1138

Query: 361  ALPYNTTRSTVVFLYENIICR 299
               +N  R  + FL ENI  R
Sbjct: 1139 PCKHNDHRVVLKFLKENIFSR 1159


>tr|A5C0S0|A5C0S0_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_032782 PE=4 SV=1
          Length = 1425

 Score = 62.0 bits (149), Expect = 2e-08
 Identities = 34/81 (41%), Positives = 49/81 (60%)
 Frame = -1

Query: 541  CQHVGRPTAADMIPLTLVRSLGVYMQWELDFMGPFKEITYRKSRYIIMATYYVSKWVEAR 362
            CQ +G+ T  +M+PL  +  + V+  WE+DFMGPF  +++  S YI++   YVSKWVEA 
Sbjct: 1096 CQRLGKLTRRNMMPLNPILIVDVFDVWEIDFMGPF-PMSFGHS-YILVGVDYVSKWVEAI 1153

Query: 361  ALPYNTTRSTVVFLYENIICR 299
                N  +  + FL ENI  R
Sbjct: 1154 PCRSNDHKVVLKFLKENIFSR 1174