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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914627
Clone id YMU001_000061_B05
Library
Length 496
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000061_B05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GCAGGTCTGCGGCTCGTACTTCTTCGCAATTTGTGACTCCGGCAAGCTCTGCGTTCCCTC
TCTAGAAGGTTTGCAGCATCAAGCTTGGATGTGGTGCTGCTAATGCTAAGCATAGGATTG
GCAGTTTATTTGAGGCAAATGGTGTAGCCTACTGGTGCTTCTACGATCTCTTGAGTCATG
AAATAGTTCTTACGTAAGGTAGAAACAGGTTTTCTTCATATTTCTCGCATCAATGGCGGA
ACCCAAAGATGACGAAAGAGATGAGGAATGGTTTAAGGAGGTTTATGGAAAAGAGTACAC
AGGACCCGTTAGGCCTGTCAGTGACAATGCTCGGGATAATTTGAGCACCAAGAAAAGGTC
AATGACAGAAGCAATTAGCAATGAACCTGATGAGGACGAGGCCCCTCCGGATCCTAATGC
TGTGCCCACTGATTTCACAAGTAGGGAAGCTAAAGTGTGGGAGGCGAATGCCAAAGCCAT
AGAAAGGAATTGGAAG
■■Homology search results ■■ -
sp_hit_id Q499Q5
Definition sp|Q499Q5|MKS1_RAT Meckel syndrome type 1 protein homolog OS=Rattus norvegicus
Align length 27
Score (bit) 30.8
E-value 3.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914627|Adiantum capillus-veneris mRNA, clone:
YMU001_000061_B05.
         (483 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q499Q5|MKS1_RAT Meckel syndrome type 1 protein homolog OS=Rat...    31   3.4  
sp|Q5SW45|MKS1_MOUSE Meckel syndrome type 1 protein homolog OS=M...    31   3.4  

>sp|Q499Q5|MKS1_RAT Meckel syndrome type 1 protein homolog OS=Rattus
           norvegicus GN=Mks1 PE=2 SV=2
          Length = 561

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 12/27 (44%), Positives = 23/27 (85%), Gaps = 2/27 (7%)
 Frame = +2

Query: 224 LASMAEPKDDERDEEWFKEVYG--KEY 298
           ++S+A+P+++ER++  FK++YG  KEY
Sbjct: 271 VSSLAQPEEEEREQRVFKDLYGRHKEY 297


>sp|Q5SW45|MKS1_MOUSE Meckel syndrome type 1 protein homolog OS=Mus
           musculus GN=Mks1 PE=2 SV=1
          Length = 561

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 12/27 (44%), Positives = 23/27 (85%), Gaps = 2/27 (7%)
 Frame = +2

Query: 224 LASMAEPKDDERDEEWFKEVYG--KEY 298
           ++S+A+P+++ER++  FK++YG  KEY
Sbjct: 271 VSSLAQPEEEEREQRVFKDLYGRHKEY 297
tr_hit_id A9TLA8
Definition tr|A9TLA8|A9TLA8_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 85
Score (bit) 73.9
E-value 4.0e-12
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914627|Adiantum capillus-veneris mRNA, clone:
YMU001_000061_B05.
         (483 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TLA8|A9TLA8_PHYPA Predicted protein (Fragment) OS=Physcomit...    74   4e-12
tr|Q5NBC3|Q5NBC3_ORYSJ cDNA clone:001-114-C08, full insert seque...    66   7e-10
tr|A2ZRC4|A2ZRC4_ORYSJ Putative uncharacterized protein OS=Oryza...    66   7e-10
tr|A2WMY2|A2WMY2_ORYSI Putative uncharacterized protein OS=Oryza...    66   7e-10
tr|B6TIM5|B6TIM5_MAIZE Putative uncharacterized protein OS=Zea m...    64   5e-09
tr|B4FCC2|B4FCC2_MAIZE Putative uncharacterized protein OS=Zea m...    64   5e-09
tr|A7Q0Q5|A7Q0Q5_VITVI Chromosome chr7 scaffold_42, whole genome...    64   5e-09
tr|Q9LZQ7|Q9LZQ7_ARATH Putative uncharacterized protein T12C14_3...    52   2e-05
tr|B7FKP4|B7FKP4_MEDTR Putative uncharacterized protein OS=Medic...    42   0.012
tr|A8WKH1|A8WKH1_CAEBR Putative uncharacterized protein OS=Caeno...    33   7.0  

>tr|A9TLA8|A9TLA8_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_223358 PE=4 SV=1
          Length = 197

 Score = 73.9 bits (180), Expect = 4e-12
 Identities = 41/85 (48%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
 Frame = +2

Query: 233 MAEPKDDERDEEWFKEVYGKEYTGPVRPVSDNAR--DNLSTKKRSMTEAISXXXXXXXXX 406
           MAE  DD+RDEEWFKEVYG EYT P R      R  +    K  +               
Sbjct: 1   MAEELDDDRDEEWFKEVYGTEYTAPARATGATRRAVEPAPPKVANKRAPNPSDSEEDEEQ 60

Query: 407 XXXXXVPTDFTSREAKVWEANAKAI 481
                VPTDFTSREAKVWEA AKA+
Sbjct: 61  RDPTAVPTDFTSREAKVWEAKAKAV 85


>tr|Q5NBC3|Q5NBC3_ORYSJ cDNA clone:001-114-C08, full insert sequence
           OS=Oryza sativa subsp. japonica GN=P0434D08.42 PE=2 SV=1
          Length = 275

 Score = 66.2 bits (160), Expect = 7e-10
 Identities = 37/82 (45%), Positives = 45/82 (54%)
 Frame = +2

Query: 233 MAEPKDDERDEEWFKEVYGKEYTGPVRPVSDNARDNLSTKKRSMTEAISXXXXXXXXXXX 412
           MA     E D+E F EVYGK Y+GPV   ++N    ++ +KR +    S           
Sbjct: 1   MAREPSPEIDDELFNEVYGKAYSGPVATTTNNVTPRVNDEKRPLEREKS---DEEDGPPD 57

Query: 413 XXXVPTDFTSREAKVWEANAKA 478
              VPTDFTSREAKVWEA AKA
Sbjct: 58  PNAVPTDFTSREAKVWEAKAKA 79


>tr|A2ZRC4|A2ZRC4_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_001096 PE=4 SV=1
          Length = 385

 Score = 66.2 bits (160), Expect = 7e-10
 Identities = 37/82 (45%), Positives = 45/82 (54%)
 Frame = +2

Query: 233 MAEPKDDERDEEWFKEVYGKEYTGPVRPVSDNARDNLSTKKRSMTEAISXXXXXXXXXXX 412
           MA     E D+E F EVYGK Y+GPV   ++N    ++ +KR +    S           
Sbjct: 1   MAREPSPEIDDELFNEVYGKAYSGPVATTTNNVTPRVNDEKRPLEREKS---DEEDGPPD 57

Query: 413 XXXVPTDFTSREAKVWEANAKA 478
              VPTDFTSREAKVWEA AKA
Sbjct: 58  PNAVPTDFTSREAKVWEAKAKA 79


>tr|A2WMY2|A2WMY2_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_01205 PE=4 SV=1
          Length = 106

 Score = 66.2 bits (160), Expect = 7e-10
 Identities = 37/82 (45%), Positives = 45/82 (54%)
 Frame = +2

Query: 233 MAEPKDDERDEEWFKEVYGKEYTGPVRPVSDNARDNLSTKKRSMTEAISXXXXXXXXXXX 412
           MA     E D+E F EVYGK Y+GPV   ++N    ++ +KR +    S           
Sbjct: 1   MAREPSPEIDDELFNEVYGKAYSGPVATTTNNVMPRVNDEKRPLEREKS---DEEDGPPD 57

Query: 413 XXXVPTDFTSREAKVWEANAKA 478
              VPTDFTSREAKVWEA AKA
Sbjct: 58  PNAVPTDFTSREAKVWEAKAKA 79


>tr|B6TIM5|B6TIM5_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 467

 Score = 63.5 bits (153), Expect = 5e-09
 Identities = 36/82 (43%), Positives = 45/82 (54%)
 Frame = +2

Query: 233 MAEPKDDERDEEWFKEVYGKEYTGPVRPVSDNARDNLSTKKRSMTEAISXXXXXXXXXXX 412
           MA     E D+E + EVYGK Y+GPV   +++     + +KR +T   S           
Sbjct: 1   MAREPSPEIDDELYNEVYGKAYSGPVASATNSVTPKGNAEKRPLTRDKSDDEDEAPDPNA 60

Query: 413 XXXVPTDFTSREAKVWEANAKA 478
              VPTDFTSREAKVWEA AKA
Sbjct: 61  ---VPTDFTSREAKVWEAKAKA 79


>tr|B4FCC2|B4FCC2_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 467

 Score = 63.5 bits (153), Expect = 5e-09
 Identities = 36/82 (43%), Positives = 45/82 (54%)
 Frame = +2

Query: 233 MAEPKDDERDEEWFKEVYGKEYTGPVRPVSDNARDNLSTKKRSMTEAISXXXXXXXXXXX 412
           MA     E D+E + EVYGK Y+GPV   +++     + +KR +T   S           
Sbjct: 1   MAREPSPEIDDELYNEVYGKAYSGPVASATNSVTPKGNAEKRPLTRDKSDDEDEAPDPNA 60

Query: 413 XXXVPTDFTSREAKVWEANAKA 478
              VPTDFTSREAKVWEA AKA
Sbjct: 61  ---VPTDFTSREAKVWEAKAKA 79


>tr|A7Q0Q5|A7Q0Q5_VITVI Chromosome chr7 scaffold_42, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00028140001
           PE=4 SV=1
          Length = 464

 Score = 63.5 bits (153), Expect = 5e-09
 Identities = 38/85 (44%), Positives = 45/85 (52%)
 Frame = +2

Query: 224 LASMAEPKDDERDEEWFKEVYGKEYTGPVRPVSDNARDNLSTKKRSMTEAISXXXXXXXX 403
           +A   EP DD+     F E+Y KEYTGP R  + N +D   T KRS   +          
Sbjct: 1   MAKRPEPDDDD-----FSEIY-KEYTGPPRSTTSNVQDKAKTSKRSHASS-----DEEEE 49

Query: 404 XXXXXXVPTDFTSREAKVWEANAKA 478
                 VPTDFTSREAKVWEA +KA
Sbjct: 50  PRDPNAVPTDFTSREAKVWEAKSKA 74


>tr|Q9LZQ7|Q9LZQ7_ARATH Putative uncharacterized protein T12C14_30
           (At3g62330) OS=Arabidopsis thaliana GN=T12C14_30 PE=2
           SV=1
          Length = 479

 Score = 51.6 bits (122), Expect = 2e-05
 Identities = 33/78 (42%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
 Frame = +2

Query: 248 DDERDEEWFKEVYGKEYTGPVRPVSDNARDNLSTKKRSMTE-AISXXXXXXXXXXXXXXV 424
           D E D++ F E+Y KEYTGP   V++N   N+  K + + + +                V
Sbjct: 7   DPELDDD-FSEIY-KEYTGPASAVTNN---NIQDKDKPVKQRSEERCDEEEEQLPDPNSV 61

Query: 425 PTDFTSREAKVWEANAKA 478
           PTDFTSREAKVWEA +KA
Sbjct: 62  PTDFTSREAKVWEAKSKA 79


>tr|B7FKP4|B7FKP4_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 361

 Score = 42.4 bits (98), Expect = 0.012
 Identities = 29/82 (35%), Positives = 43/82 (52%)
 Frame = +2

Query: 233 MAEPKDDERDEEWFKEVYGKEYTGPVRPVSDNARDNLSTKKRSMTEAISXXXXXXXXXXX 412
           MA   D + D++ F+++Y KEYTGP    S + ++   + KRS     +           
Sbjct: 1   MANIPDPDIDDD-FRDLY-KEYTGPAG--SGSVQERAKSNKRS-----NAGSDEEDEVRD 51

Query: 413 XXXVPTDFTSREAKVWEANAKA 478
              +PT F SR+AKVWEA +KA
Sbjct: 52  PNAIPTGFISRDAKVWEAKSKA 73


>tr|A8WKH1|A8WKH1_CAEBR Putative uncharacterized protein
           OS=Caenorhabditis briggsae GN=CBG24330 PE=4 SV=2
          Length = 328

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 36/96 (37%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
 Frame = -3

Query: 469 IRLPH-FSFPTCEISGHSIRIRRGLVLIRFIANCFCH*PFLGA--QIIPSIVTDRPNGSC 299
           +R+ H F   TC +    IRI  G V +R IAN FC    LG+  ++ PS V   P    
Sbjct: 93  LRVIHLFWIRTCGLV--EIRICFGFVFLRNIANRFCLMFRLGSATRLSPSCVRFIP---- 146

Query: 298 VLFSINLLKPFLISFVIFGFRH*CEKYEENLFLPYV 191
            LF++  L   +ISF +F      EKY+E    PYV
Sbjct: 147 -LFAVIFL--LVISFTVFKSSG-IEKYQERTNAPYV 178