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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914628
Clone id YMU001_000061_B06
Library
Length 532
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000061_B06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CAACAGGAGAATGACCTCGCGCACTCTTACCATTGCCCTCTGGATTGTATGCCGTAGTAA
AAGCAAGTTTGATCCCAATTTTGATCAAAAAAATCACAAGCTTCATTAGCATCGAGCTCT
CCATGATCACCATGATCTTCCCTACACAACCATATCTGCAAATAACATCTTTAAGCAAAA
ATTTACACACAATAGTGGTTGCTCAGTATGCAAAGCTCTTCCCTCCAATTGATTGGAGTG
GTCTTCCTTGGCAAGTACAATATATCACACCTGCCATACTCCAACATGCATACTGATAAG
ATCAACAACCCACTTATAATGCAAAGCTAATGGGTAAAAAGGATGCAAACCATCTTGATG
ATGAACGTTGGAGTATTGCTAATAGACAACACACGTCTCTACAAACTGAACCACATCTTT
ATACATGGATTTCCAATAGTATCGATCTTAATATTTGACATAGTAGCCCAAACACCTTTG
TGTCCAACCCACAAACTCTTGTGAAACTCTTTGAGTACCTGTTGTTGAATAG
■■Homology search results ■■ -
sp_hit_id O57539
Definition sp|O57539|NCOA3_XENLA Nuclear receptor coactivator 3 OS=Xenopus laevis
Align length 132
Score (bit) 33.1
E-value 0.85
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914628|Adiantum capillus-veneris mRNA, clone:
YMU001_000061_B06.
         (532 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O57539|NCOA3_XENLA Nuclear receptor coactivator 3 OS=Xenopus ...    33   0.85 
sp|P40367|GPI7_YEAST GPI ethanolamine phosphate transferase 2 OS...    30   7.2  
sp|P58211|DAPB2_RHILO Dihydrodipicolinate reductase 2 OS=Rhizobi...    30   9.4  

>sp|O57539|NCOA3_XENLA Nuclear receptor coactivator 3 OS=Xenopus
           laevis GN=ncoa3 PE=1 SV=1
          Length = 1391

 Score = 33.1 bits (74), Expect = 0.85
 Identities = 31/132 (23%), Positives = 60/132 (45%), Gaps = 10/132 (7%)
 Frame = +3

Query: 39  SGLYAVVKASLIPILIKKITSFISIELSMITMIFPTQ---PYLQI-------TSLSKNLH 188
           +G   + K SL P+L++ +  F+ +     +++F ++    YLQ        TS+   LH
Sbjct: 105 TGQGVIDKDSLGPLLLQALDGFLYVVNREGSIVFVSENVTQYLQYKQEDLVNTSVYSILH 164

Query: 189 TIVVAQYAKLFPPIDWSGLPWQVQYITPAILQHAY**DQQPTYNAKLMGKKDANHLDDER 368
                 + K  P    +G+PW  +  TP    H        T+N +++ K   +HL+D  
Sbjct: 165 EEDRKDFLKNLPKSTVNGVPWFSE--TPRQKSH--------TFNCRMLVKTSHDHLEDGS 214

Query: 369 WSIANRQHTSLQ 404
              A +++ ++Q
Sbjct: 215 NLDARQRYETMQ 226


>sp|P40367|GPI7_YEAST GPI ethanolamine phosphate transferase 2
           OS=Saccharomyces cerevisiae GN=LAS21 PE=1 SV=1
          Length = 830

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
 Frame = +3

Query: 15  PRALLPLPSGLYAVVKASLIPILIKKITSFISIELSMITMIFPTQPYLQITSLSKNLHTI 194
           P A L   S +Y    ++L+ ++++  T F     + I+ I     Y  ++S   N++ +
Sbjct: 673 PTASLTSTSKIYF---SNLVSLILQNFTFFQFGGTNSISTIDLGNAYHGVSS-DYNIYVV 728

Query: 195 -VVAQYAKLFPPIDWSGLPWQVQY 263
            ++   A   P I WS LPW + Y
Sbjct: 729 GILMSVANFAPAIYWSMLPWSINY 752


>sp|P58211|DAPB2_RHILO Dihydrodipicolinate reductase 2 OS=Rhizobium
           loti GN=dapB2 PE=3 SV=1
          Length = 258

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +3

Query: 75  PILIKKITSFISIELSMITMIFPTQPYLQITSLSKNLHTIV--VAQYAKLFPPIDW 236
           P L+   T F + EL+ I     T P ++  S S  L+ +V  V Q A+ F P DW
Sbjct: 82  PALVIGSTGFDAAELADIADAAKTVPIVRSGSFSLGLNMLVGLVEQAARAFAPEDW 137
tr_hit_id A6SHV6
Definition tr|A6SHV6|A6SHV6_BOTFB Putative uncharacterized protein OS=Botryotinia fuckeliana (strain B05.10)
Align length 67
Score (bit) 43.1
E-value 2.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914628|Adiantum capillus-veneris mRNA, clone:
YMU001_000061_B06.
         (532 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A6SHV6|A6SHV6_BOTFB Putative uncharacterized protein OS=Botry...    43   2e-07
tr|A6RNZ8|A6RNZ8_BOTFB Putative uncharacterized protein OS=Botry...    43   2e-07
tr|B3GGB9|B3GGB9_PODAN Gag-pol polyprotein OS=Podospora anserina...    44   6e-07
tr|A9TQU8|A9TQU8_PHYPA Predicted protein (Fragment) OS=Physcomit...    49   2e-04
tr|Q1DM59|Q1DM59_COCIM Putative uncharacterized protein OS=Cocci...    35   3e-04
tr|A9TWP1|A9TWP1_PHYPA Predicted protein (Fragment) OS=Physcomit...    47   8e-04
tr|Q1DLK7|Q1DLK7_COCIM Putative uncharacterized protein OS=Cocci...    33   0.007
tr|Q1DKB8|Q1DKB8_COCIM Putative uncharacterized protein OS=Cocci...    34   0.012
tr|B2BXM3|B2BXM3_ARALY GagPol3 OS=Arabidopsis lyrata subsp. lyra...    32   0.024
tr|Q7XJX8|Q7XJX8_ORYSJ OSJNBa0063C18.15 protein (OSJNBa0033G05.1...    32   0.031
tr|A8NJK5|A8NJK5_COPC7 Putative uncharacterized protein OS=Copri...    40   0.057
tr|A5BRU7|A5BRU7_VITVI Putative uncharacterized protein OS=Vitis...    30   0.15 
tr|Q8S749|Q8S749_ORYSA Putative retroelement OS=Oryza sativa GN=...    30   0.18 
tr|Q33AQ4|Q33AQ4_ORYSJ Retrotransposon protein, putative, Ty3-gy...    30   0.18 
tr|Q1E970|Q1E970_COCIM Putative uncharacterized protein OS=Cocci...    39   0.22 
tr|A5BID0|A5BID0_VITVI Putative uncharacterized protein OS=Vitis...    34   0.23 
tr|Q2QZU9|Q2QZU9_ORYSJ Retrotransposon protein, putative, Ty3-gy...    32   0.23 
tr|Q75G47|Q75G47_ORYSJ Putative polyprotein OS=Oryza sativa subs...    32   0.24 
tr|Q7X805|Q7X805_ORYSJ OSJNBb0103I08.2 protein (OSJNBa0011L07.17...    33   0.24 
tr|Q01IP3|Q01IP3_ORYSA H0115B09.9 protein OS=Oryza sativa GN=H01...    33   0.24 
tr|A5B9S9|A5B9S9_VITVI Putative uncharacterized protein OS=Vitis...    34   0.24 
tr|Q0ZCD7|Q0ZCD7_POPTR RNA-directed DNA polymerase OS=Populus tr...    38   0.28 
tr|A5BXH5|A5BXH5_VITVI Putative uncharacterized protein OS=Vitis...    38   0.28 
tr|Q9FE41|Q9FE41_ORYSJ Similar to Arabidopsis thaliana chromosom...    30   0.30 
tr|A5BRH8|A5BRH8_VITVI Putative uncharacterized protein OS=Vitis...    32   0.33 
tr|A5BES7|A5BES7_VITVI Putative uncharacterized protein OS=Vitis...    28   0.41 
tr|Q1E4C7|Q1E4C7_COCIM Putative uncharacterized protein OS=Cocci...    37   0.49 
tr|Q9XZR7|Q9XZR7_DROBU Protease, reverse transcriptase, ribonucl...    32   0.52 
tr|A5BHL3|A5BHL3_VITVI Putative uncharacterized protein OS=Vitis...    28   0.53 
tr|Q5R1K7|Q5R1K7_ORYSJ Retrotransposon protein, putative, Ty3-gy...    29   0.55 

>tr|A6SHV6|A6SHV6_BOTFB Putative uncharacterized protein
           OS=Botryotinia fuckeliana (strain B05.10) GN=BC1G_12337
           PE=4 SV=1
          Length = 1114

 Score = 43.1 bits (100), Expect(2) = 2e-07
 Identities = 23/67 (34%), Positives = 34/67 (50%)
 Frame = -1

Query: 202 ATTIVCKFLLKDVICRYGCVGKIMVIMESSMLMKLVIFLIKIGIKLAFTTAYNPEGNGKS 23
           AT+      + +V+CR+   GK+ V         +  FL K GIK    +AYN + NG+ 
Sbjct: 777 ATSQAVAAFIWNVVCRHSVFGKVSVDGGPENKAHVEYFLRKYGIKRVQISAYNSKANGQI 836

Query: 22  ARGHSPV 2
            RGH P+
Sbjct: 837 ERGHRPI 843



 Score = 35.4 bits (80), Expect(2) = 2e-07
 Identities = 22/77 (28%), Positives = 38/77 (49%)
 Frame = -2

Query: 441 YYWKSMYKDVVQFVETCVVY*QYSNVHHQDGLHPFYPLALHYKWVVDLISMHVGVWQV*Y 262
           YYW  MY+DV +FV++C    +      ++ LHP +      K  +D++ M        Y
Sbjct: 699 YYWNGMYEDVKRFVKSCPNCQKRQPNVQEEPLHPTWVSTCWQKCGLDIMYMPPDNGYK-Y 757

Query: 261 IVLAKEDHSNQLEGRAL 211
           +V  ++D S  +E + L
Sbjct: 758 LVSLRDDLSGWIEAKPL 774


>tr|A6RNZ8|A6RNZ8_BOTFB Putative uncharacterized protein
           OS=Botryotinia fuckeliana (strain B05.10) GN=BC1G_02171
           PE=4 SV=1
          Length = 1114

 Score = 43.1 bits (100), Expect(2) = 2e-07
 Identities = 23/67 (34%), Positives = 34/67 (50%)
 Frame = -1

Query: 202 ATTIVCKFLLKDVICRYGCVGKIMVIMESSMLMKLVIFLIKIGIKLAFTTAYNPEGNGKS 23
           AT+      + +V+CR+   GK+ V         +  FL K GIK    +AYN + NG+ 
Sbjct: 777 ATSQAVAAFIWNVVCRHSVFGKVSVDGGPENKAHVEYFLRKYGIKRVQISAYNSKANGQI 836

Query: 22  ARGHSPV 2
            RGH P+
Sbjct: 837 ERGHRPI 843



 Score = 35.4 bits (80), Expect(2) = 2e-07
 Identities = 22/77 (28%), Positives = 38/77 (49%)
 Frame = -2

Query: 441 YYWKSMYKDVVQFVETCVVY*QYSNVHHQDGLHPFYPLALHYKWVVDLISMHVGVWQV*Y 262
           YYW  MY+DV +FV++C    +      ++ LHP +      K  +D++ M        Y
Sbjct: 699 YYWNGMYEDVKRFVKSCPNCQKRQPNVQEEPLHPTWVSTCWQKCGLDIMYMPPDNGYK-Y 757

Query: 261 IVLAKEDHSNQLEGRAL 211
           +V  ++D S  +E + L
Sbjct: 758 LVSLRDDLSGWIEAKPL 774


>tr|B3GGB9|B3GGB9_PODAN Gag-pol polyprotein OS=Podospora anserina PE=4
            SV=1
          Length = 2603

 Score = 43.5 bits (101), Expect(2) = 6e-07
 Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
 Frame = -2

Query: 462  YVKY*DRYYWKSMYKDVVQFVETCVVY*QYSNVHHQDGLHPFYPLALHY-KWVVDLISMH 286
            Y +  + YYWK MY DV  +++TC    Q+S    +D      PLA  + KW +D+  + 
Sbjct: 2150 YARVVENYYWKGMYADVEAWIKTCRQCQQWSPKRWEDWHLYTEPLATPFAKWHLDVQFLP 2209

Query: 285  VGVWQV*YIVLAKEDHSNQLEGRALHTEQPLLCVNFCL 172
                +  Y++ A++D +   E + L + +     NF L
Sbjct: 2210 TASGEKAYLLEARDDLTGYPEAKVLSSGKASGVENFIL 2247



 Score = 33.1 bits (74), Expect(2) = 6e-07
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = -1

Query: 181  FLLKDVICRYGCVGKIMVIMESSMLMKLVIFLIKIGIKLAFTTAYNPEGNGKSARGHSPV 2
            F+L D+I R+G    ++V   S    +    L ++G+     + YN   NG +  GH P+
Sbjct: 2245 FILHDIILRWGHPLIVVVDGGSEFRKEAAEILERLGVLRVVVSPYNARANGVTESGHIPI 2304


>tr|A9TQU8|A9TQU8_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_149146 PE=4 SV=1
          Length = 58

 Score = 48.9 bits (115), Expect = 2e-04
 Identities = 26/55 (47%), Positives = 32/55 (58%)
 Frame = -1

Query: 190 VCKFLLKDVICRYGCVGKIMVIMESSMLMKLVIFLIKIGIKLAFTTAYNPEGNGK 26
           + +FLL+DVIC YGC+ KI        + K   FL + GIKL  T AYN E N K
Sbjct: 3   IYRFLLEDVICCYGCIKKITTDYGKLNVQKTYEFLERCGIKLLLTIAYNLERNVK 57


>tr|Q1DM59|Q1DM59_COCIM Putative uncharacterized protein
           OS=Coccidioides immitis GN=CIMG_08604 PE=4 SV=1
          Length = 229

 Score = 35.4 bits (80), Expect(2) = 3e-04
 Identities = 27/86 (31%), Positives = 39/86 (45%)
 Frame = -2

Query: 468 GYYVKY*DRYYWKSMYKDVVQFVETCVVY*QYSNVHHQDGLHPFYPLALHYKWVVDLISM 289
           G Y     +Y+W  MYKDV  +V+ C    Q  +    + LH  +      K  VD+  M
Sbjct: 61  GTYSALQAQYWWSGMYKDVSAYVKHCSQCQQRDSQRLSEELHSTWAPIYWEKVGVDIKHM 120

Query: 288 HVGVWQV*YIVLAKEDHSNQLEGRAL 211
                Q  Y+V+A+ D +  LE R L
Sbjct: 121 PSCQGQN-YLVVARCDFTGWLEARVL 145



 Score = 32.0 bits (71), Expect(2) = 3e-04
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = -1

Query: 190 VCKFLLKDVICRYGCVGKIMVIMESSMLMKLVI--FLIKIGIKLAFTTAYNPEGNGKSAR 17
           V KFL +++IC++G   K   +M+     K ++   L K  IK    + YN   N     
Sbjct: 153 VAKFLYENIICQWGLPAKF--VMDGGPENKDIVETLLKKFNIKHIVISPYNSPANDMVEV 210

Query: 16  GHSPV 2
           GH P+
Sbjct: 211 GHKPL 215


>tr|A9TWP1|A9TWP1_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_53485 PE=4 SV=1
          Length = 96

 Score = 46.6 bits (109), Expect = 8e-04
 Identities = 24/56 (42%), Positives = 32/56 (57%)
 Frame = -1

Query: 175 LKDVICRYGCVGKIMVIMESSMLMKLVIFLIKIGIKLAFTTAYNPEGNGKSARGHS 8
           L+DVICRYGC+ KI        + +   F  + GIKL+ TT+YN E    S R H+
Sbjct: 1   LEDVICRYGCMEKITTDCGELDVHEAHEFFKRCGIKLSLTTSYNSEKKANSERRHA 56


>tr|Q1DLK7|Q1DLK7_COCIM Putative uncharacterized protein
           OS=Coccidioides immitis GN=CIMG_08806 PE=4 SV=1
          Length = 199

 Score = 33.5 bits (75), Expect(2) = 0.007
 Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
 Frame = -1

Query: 286 CWSMAGVIYCTCQGRPLQSIGGKSFAY*ATT-IVCKFLLKDVICRYGCVGKIMVIMESSM 110
           CW   GV       + + S  G+++   A +  V KFL +++IC++G   K   +M    
Sbjct: 109 CWEKVGVNI-----KHIPSCQGQNYLVVARSEAVAKFLYENIICQWGLPAKF--VMNGGP 161

Query: 109 LMKLVI--FLIKIGIKLAFTTAYNPEGNGKSARG 14
             K ++   L K  IK    + YN   N K+  G
Sbjct: 162 ENKNIVETLLKKFNIKHIVISLYNSPANAKATNG 195



 Score = 29.3 bits (64), Expect(2) = 0.007
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 444 RYYWKSMYKDVVQFVETCVVY*QYSNVHHQDGLHPFY 334
           +Y+W  MYKDV  +++ C  Y Q       + LH  +
Sbjct: 69  QYWWSEMYKDVSAYMKHCSQYQQRDLQRLSEELHSIW 105


>tr|Q1DKB8|Q1DKB8_COCIM Putative uncharacterized protein
           OS=Coccidioides immitis GN=CIMG_09245 PE=4 SV=1
          Length = 306

 Score = 34.3 bits (77), Expect(2) = 0.012
 Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
 Frame = -1

Query: 274 AGVIYCT-CQGRPLQSIGGKSFAY*ATTIVCKFLLKDVICRYGCVGKIMVIMESSMLMKL 98
           A V +C+ CQ R  Q +  K+ A      V KFL +++IC++G   K   +M+     K 
Sbjct: 45  AYVKHCSQCQQRDSQRVLKKATA----EAVAKFLYENIICQWGLPAKF--VMDGGPENKN 98

Query: 97  VI--FLIKIGIKLAFTTAYNPEGN 32
           V+   L K  IK    + YNP  N
Sbjct: 99  VVETLLKKFNIKCIVISPYNPPAN 122



 Score = 27.7 bits (60), Expect(2) = 0.012
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 444 RYYWKSMYKDVVQFVETC 391
           +Y+W  MYKDV  +V+ C
Sbjct: 33  QYWWSEMYKDVSAYVKHC 50


>tr|B2BXM3|B2BXM3_ARALY GagPol3 OS=Arabidopsis lyrata subsp. lyrata
            GN=GagPol3 PE=4 SV=1
          Length = 1103

 Score = 31.6 bits (70), Expect(2) = 0.024
 Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = -1

Query: 181  FLLKDVICRYGCVGKIMVIMESSMLM-KLVIFLIKIGIKLAFTTAYNPEGNGKSARGHSP 5
            F+ K++ICR+G   +I+       +  +   F    GIK++++T   P+GNG++   +  
Sbjct: 866  FIWKNIICRHGVPYEIVTDNGPQFISHEFDAFCADWGIKVSYSTPRYPQGNGQAEAANKT 925

Query: 4    V 2
            +
Sbjct: 926  I 926



 Score = 29.3 bits (64), Expect(2) = 0.024
 Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
 Frame = -2

Query: 441  YYWKSMYKDVVQFVETCVVY*QYSNVHHQDGLHPFYPLALHY---KWVVDLIS-MHVGVW 274
            Y+W +M  D V+F + C     ++ + HQ     F  ++  Y   +W +D+I  +H    
Sbjct: 776  YFWPTMITDCVKFAQRCKRCQLHAPLIHQPS-ELFSSISAPYPFMRWSMDIIGPLHKSTR 834

Query: 273  QV*YIVLAKEDHSNQLEGRA 214
             V Y+++  +  S  +E  A
Sbjct: 835  GVQYLLVLTDYFSKWIEAEA 854


>tr|Q7XJX8|Q7XJX8_ORYSJ OSJNBa0063C18.15 protein (OSJNBa0033G05.1
            protein) OS=Oryza sativa subsp. japonica
            GN=OSJNBa0063C18.15 PE=4 SV=2
          Length = 1764

 Score = 32.3 bits (72), Expect(2) = 0.031
 Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
 Frame = -1

Query: 190  VCKFLLKDVICRYGCVGKIMVIMESSMLMKLVIFLIK-IGIKLAFTTAYNPEGNGKSAR 17
            + +  +  V+CR+GC  KI+    +    +    L + +G  L F+TAY+P+ +G++ R
Sbjct: 1460 LAELYMTHVVCRFGCPKKIVSDRGTQFTSRFWKQLHEALGTDLNFSTAYHPQTDGQTER 1518



 Score = 28.1 bits (61), Expect(2) = 0.031
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = -2

Query: 441  YYWKSMYKDVVQFVETCVVY*QYSNVHHQDGLHPFYPLALHY--KWVVDLISMHV 283
            ++W  M +DV ++V  C V  +    H +   H F P+   Y  K + +L   HV
Sbjct: 1415 FWWTGMKRDVAEYVALCDVCQRVKAEHQRPAAH-FVPVKTTYDGKKLAELYMTHV 1468