NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914635
Clone id YMU001_000061_C01
Library
Length 433
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000061_C01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AGCAGGTTTTGTGTTAGTCTTGTGCACTTCTCTTTCATTATTAGCGAGTGCTACCTAAAG
GTTAAGGTTACAAAGACTGCTGAAGATGCAATCCACCACTGCCTAGCATGCCTGTGTAAT
TAGTAGCTGAGAACAACTCCCTCCAATTAGTTGATTCTGTCGAAGAGGTCGTTCAGCATC
CAAGAGTTTGTCAAACTGTACAATTTCAATTGAATAGCCAATGCTCTCTAATCCCTGCTT
GGAGGGCTTCTCATCCCATTAATGGCACCCGAAAACGACCAATTTTTCATTGGCCCCCTA
CGCAGAGGAAGGTCGGTGTAATGCTCGAACTCTGCCTTCATTTCTGGTGTAGCTGCCCCT
GGGCTCCAATTTTTCTGCTTTAAAAGCTTCTTACTATGTAAAGATCTCAAAGAAGGAGGA
GATGCTGTATAAT
■■Homology search results ■■ -
sp_hit_id Q149F1
Definition sp|Q149F1|RUSD2_MOUSE RNA pseudouridylate synthase domain-containing protein 2 OS=Mus musculus
Align length 33
Score (bit) 30.8
E-value 2.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914635|Adiantum capillus-veneris mRNA, clone:
YMU001_000061_C01.
         (433 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q149F1|RUSD2_MOUSE RNA pseudouridylate synthase domain-contai...    31   2.5  
sp|A1RIY0|SYM_SHESW Methionyl-tRNA synthetase OS=Shewanella sp. ...    30   3.2  
sp|A4Y7K8|SYM_SHEPC Methionyl-tRNA synthetase OS=Shewanella putr...    30   3.2  
sp|A9L4F6|SYM_SHEB9 Methionyl-tRNA synthetase OS=Shewanella balt...    30   3.2  
sp|A6WP56|SYM_SHEB8 Methionyl-tRNA synthetase OS=Shewanella balt...    30   3.2  
sp|A3D5E5|SYM_SHEB5 Methionyl-tRNA synthetase OS=Shewanella balt...    30   3.2  
sp|A1S798|SYM_SHEAM Methionyl-tRNA synthetase OS=Shewanella amaz...    30   4.2  
sp|Q12MI8|SYM_SHEDO Methionyl-tRNA synthetase OS=Shewanella deni...    29   9.3  
sp|Q8IZ73|RUSD2_HUMAN RNA pseudouridylate synthase domain-contai...    29   9.3  
sp|Q07340|ACSC_MOOTH Corrinoid/iron-sulfur protein large subunit...    29   9.6  

>sp|Q149F1|RUSD2_MOUSE RNA pseudouridylate synthase
           domain-containing protein 2 OS=Mus musculus GN=Rpusd2
           PE=2 SV=2
          Length = 553

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 84  RCNPPLPSMPV*LVAENNSLQLVDSVEEVVQHP 182
           R  PP+ + P+ L+AENN + ++D    +  HP
Sbjct: 226 RHEPPVTAEPIHLLAENNDVVVIDKPSSIPVHP 258


>sp|A1RIY0|SYM_SHESW Methionyl-tRNA synthetase OS=Shewanella sp.
           (strain W3-18-1) GN=metG PE=3 SV=1
          Length = 689

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 353 ATPEMKAEFEHYTDLPLRRGPMKNWSFSGAI 261
           ATP MK     + DLP   G +K W+ SGA+
Sbjct: 181 ATPVMKDTEHFFFDLPAFEGMLKEWTRSGAL 211


>sp|A4Y7K8|SYM_SHEPC Methionyl-tRNA synthetase OS=Shewanella
           putrefaciens (strain CN-32 / ATCC BAA-453) GN=metG PE=3
           SV=1
          Length = 689

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 353 ATPEMKAEFEHYTDLPLRRGPMKNWSFSGAI 261
           ATP MK     + DLP   G +K W+ SGA+
Sbjct: 181 ATPVMKDTEHFFFDLPAFEGMLKEWTRSGAL 211


>sp|A9L4F6|SYM_SHEB9 Methionyl-tRNA synthetase OS=Shewanella baltica
           (strain OS195) GN=metG PE=3 SV=1
          Length = 689

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 353 ATPEMKAEFEHYTDLPLRRGPMKNWSFSGAI 261
           ATP MK     + DLP   G +K W+ SGA+
Sbjct: 181 ATPVMKDTEHFFFDLPAFEGMLKEWTRSGAL 211


>sp|A6WP56|SYM_SHEB8 Methionyl-tRNA synthetase OS=Shewanella baltica
           (strain OS185) GN=metG PE=3 SV=1
          Length = 689

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 353 ATPEMKAEFEHYTDLPLRRGPMKNWSFSGAI 261
           ATP MK     + DLP   G +K W+ SGA+
Sbjct: 181 ATPVMKDTEHFFFDLPAFEGMLKEWTRSGAL 211


>sp|A3D5E5|SYM_SHEB5 Methionyl-tRNA synthetase OS=Shewanella baltica
           (strain OS155 / ATCC BAA-1091) GN=metG PE=3 SV=1
          Length = 689

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 353 ATPEMKAEFEHYTDLPLRRGPMKNWSFSGAI 261
           ATP MK     + DLP   G +K W+ SGA+
Sbjct: 181 ATPVMKDTEHFFFDLPAFEGMLKEWTRSGAL 211


>sp|A1S798|SYM_SHEAM Methionyl-tRNA synthetase OS=Shewanella
           amazonensis (strain ATCC BAA-1098 / SB2B) GN=metG PE=3
           SV=1
          Length = 675

 Score = 30.0 bits (66), Expect = 4.2
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 353 ATPEMKAEFEHYTDLPLRRGPMKNWSFSGAI 261
           ATP MK     + DLP   G +K W+ SGA+
Sbjct: 181 ATPVMKETEHFFFDLPAFEGMLKAWTRSGAL 211


>sp|Q12MI8|SYM_SHEDO Methionyl-tRNA synthetase OS=Shewanella
           denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)
           GN=metG PE=3 SV=1
          Length = 689

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 353 ATPEMKAEFEHYTDLPLRRGPMKNWSFSGAI 261
           ATP MK     + DLP   G +K W  SG++
Sbjct: 181 ATPVMKDTEHFFFDLPAFEGMLKEWIHSGSL 211


>sp|Q8IZ73|RUSD2_HUMAN RNA pseudouridylate synthase
           domain-containing protein 2 OS=Homo sapiens GN=RPUSD2
           PE=1 SV=2
          Length = 545

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 84  RCNPPLPSMPV*LVAENNSLQLVDSVEEVVQHP 182
           R  PP+ + P+ L+AEN  + +VD    +  HP
Sbjct: 213 RHEPPVTAEPIRLLAENEDVVVVDKPSSIPVHP 245


>sp|Q07340|ACSC_MOOTH Corrinoid/iron-sulfur protein large subunit
           OS=Moorella thermoacetica GN=acsC PE=1 SV=2
          Length = 446

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 275 TTNFSLAPYAEEGRCNARTLPSFLV 349
           TTNFSL  Y+ EG   +  +PS+L+
Sbjct: 340 TTNFSLTYYSVEGEIESTKIPSYLL 364
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914635|Adiantum capillus-veneris mRNA, clone:
YMU001_000061_C01.
         (433 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******