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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914640
Clone id YMU001_000061_C06
Library
Length 543
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000061_C06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ATAAGGTGATAATTTGATTCACATTCTTTAAGTACCAATGTACAAAATGGAAATTATGTA
TGTTTTGGAACAATATAATTTTTGCTAAAGACTGTTCCTCCTGACATGTACACGGACAGA
CAGGATGATGTATTTTATAAGCATGGTAGCAACAGAGGAGGTGTATAAGCATACATAAAT
AGTGATACTGTACAGGGCATAACAAGAGGCATGGGTTATTGAAGCCTCCAAGGTTATTGT
AGATGTCATTCTCCCTTGTGTTTCGATAAGGTGTCCCATGCCGCACATAGCTAGGTGCTG
CGCGCGCAGATGAGGTCGTAAAGTGGGAATTACGGTTGGACAAACATGGATAAAACCAAC
TTTAGAAACTCACTGCTCGAATTGCAGTGAGGTGGAATACGATGGCAATTTGGGTTTTTT
CAAAGGGGTCGTTGGGGCAATTTGCTGTCAGGAAACAAATGCCCTTGTACTCATAGGCAC
TCGCTGAGAGTCGGAACCTCCATTCCGTGAAGGGTGTAAGCCTCATGTAAAGACCTTCAT
CAT
■■Homology search results ■■ -
sp_hit_id P0AAY5
Definition sp|P0AAY5|YBJH_SHIFL Uncharacterized protein ybjH OS=Shigella flexneri
Align length 32
Score (bit) 31.6
E-value 2.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914640|Adiantum capillus-veneris mRNA, clone:
YMU001_000061_C06.
         (543 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P0AAY5|YBJH_SHIFL Uncharacterized protein ybjH OS=Shigella fl...    32   2.6  
sp|P0AAY4|YBJH_ECOLI Uncharacterized protein ybjH OS=Escherichia...    32   2.6  
sp|Q9LNP2|PPR47_ARATH Putative pentatricopeptide repeat-containi...    30   5.8  
sp|P16435|NCPR_HUMAN NADPH--cytochrome P450 reductase OS=Homo sa...    30   9.9  

>sp|P0AAY5|YBJH_SHIFL Uncharacterized protein ybjH OS=Shigella
           flexneri GN=ybjH PE=4 SV=1
          Length = 94

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 351 IHVCPTVIPTLRPHLRAQHLAMCGMGHLIETQ 256
           ++V P   P  RPH   +HLA  G G +IE Q
Sbjct: 57  VYVAPAPAPAYRPHPYVRHLASVGEGMVIEHQ 88


>sp|P0AAY4|YBJH_ECOLI Uncharacterized protein ybjH OS=Escherichia
           coli (strain K12) GN=ybjH PE=4 SV=1
          Length = 94

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 351 IHVCPTVIPTLRPHLRAQHLAMCGMGHLIETQ 256
           ++V P   P  RPH   +HLA  G G +IE Q
Sbjct: 57  VYVAPAPAPAYRPHPYVRHLASVGEGMVIEHQ 88


>sp|Q9LNP2|PPR47_ARATH Putative pentatricopeptide repeat-containing
           protein At1g17630 OS=Arabidopsis thaliana GN=PCMP-E72
           PE=3 SV=1
          Length = 731

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 502 WRFRLSASAYEYKGICFLTANCP 434
           W+FRL    +  +  CFLT+ CP
Sbjct: 7   WQFRLQIIPWRLRNFCFLTSQCP 29


>sp|P16435|NCPR_HUMAN NADPH--cytochrome P450 reductase OS=Homo
           sapiens GN=POR PE=1 SV=2
          Length = 677

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 209 AWVIEASKVIVDVILPCVSIRCPMPHIARCCAR 307
           +WV+EA + I+ ++  C S+R P+ H+     R
Sbjct: 418 SWVVEARRHILAILQDCPSLRPPIDHLCELLPR 450
tr_hit_id A3UTP0
Definition tr|A3UTP0|A3UTP0_VIBSP Putative transcriptional regulator, AraC/XylS family OS=Vibrio splendidus 12B01
Align length 49
Score (bit) 33.5
E-value 7.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914640|Adiantum capillus-veneris mRNA, clone:
YMU001_000061_C06.
         (543 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A3UTP0|A3UTP0_VIBSP Putative transcriptional regulator, AraC/...    33   7.4  
tr|B1ENV5|B1ENV5_9ESCH Putative uncharacterized protein OS=Esche...    33   7.6  
tr|Q3Z3U1|Q3Z3U1_SHISS Putative uncharacterized protein ybjH OS=...    33   9.9  
tr|Q323U6|Q323U6_SHIBS Putative uncharacterized protein ybjH OS=...    33   9.9  
tr|B2TV86|B2TV86_SHIB3 Putative uncharacterized protein OS=Shige...    33   9.9  
tr|B1IXC4|B1IXC4_ECOLC Putative uncharacterized protein OS=Esche...    33   9.9  
tr|A7ZYA5|A7ZYA5_ECOHS Putative uncharacterized protein OS=Esche...    33   9.9  
tr|B3IL00|B3IL00_ECOLX Putative uncharacterized protein OS=Esche...    33   9.9  

>tr|A3UTP0|A3UTP0_VIBSP Putative transcriptional regulator,
           AraC/XylS family OS=Vibrio splendidus 12B01
           GN=V12B01_15416 PE=4 SV=1
          Length = 375

 Score = 33.5 bits (75), Expect = 7.4
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +2

Query: 320 KVGITVGQTWIKPTLETHCSNCSEVEYDGNLGFFKGVVGAICCQETNAL 466
           K+ I V   W++P L  HCS+ S +  D +  F+   + A   Q TNAL
Sbjct: 146 KINILVKPQWVEPRLSDHCSSKSFL--DSHKAFYNVKINADIIQLTNAL 192


>tr|B1ENV5|B1ENV5_9ESCH Putative uncharacterized protein
           OS=Escherichia albertii TW07627 GN=ESCAB7627_3565 PE=4
           SV=1
          Length = 92

 Score = 33.5 bits (75), Expect = 7.6
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -1

Query: 351 IHVCPTVIPTLRPHLRAQHLAMCGMGHLIETQ 256
           ++V PT  P  RPH   +HLA  G G +IE Q
Sbjct: 55  VYVAPTPAPAYRPHPYVRHLASVGEGMVIEHQ 86


>tr|Q3Z3U1|Q3Z3U1_SHISS Putative uncharacterized protein ybjH
           OS=Shigella sonnei (strain Ss046) GN=ybjH PE=4 SV=1
          Length = 94

 Score = 33.1 bits (74), Expect = 9.9
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -1

Query: 351 IHVCPTVIPTLRPHLRAQHLAMCGMGHLIETQ 256
           ++V P   P  RPH  A+HLA  G G +IE Q
Sbjct: 57  VYVAPAPAPAYRPHPYARHLASVGEGMVIEHQ 88


>tr|Q323U6|Q323U6_SHIBS Putative uncharacterized protein ybjH
           OS=Shigella boydii serotype 4 (strain Sb227) GN=ybjH
           PE=4 SV=1
          Length = 94

 Score = 33.1 bits (74), Expect = 9.9
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -1

Query: 351 IHVCPTVIPTLRPHLRAQHLAMCGMGHLIETQ 256
           ++V P   P  RPH  A+HLA  G G +IE Q
Sbjct: 57  VYVAPAPAPAYRPHPYARHLASVGEGMVIEHQ 88


>tr|B2TV86|B2TV86_SHIB3 Putative uncharacterized protein OS=Shigella
           boydii serotype 18 (strain CDC 3083-94 / BS512)
           GN=SbBS512_E2502 PE=4 SV=1
          Length = 92

 Score = 33.1 bits (74), Expect = 9.9
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -1

Query: 351 IHVCPTVIPTLRPHLRAQHLAMCGMGHLIETQ 256
           ++V P   P  RPH  A+HLA  G G +IE Q
Sbjct: 55  VYVAPAPAPAYRPHPYARHLASVGEGMVIEHQ 86


>tr|B1IXC4|B1IXC4_ECOLC Putative uncharacterized protein
           OS=Escherichia coli (strain ATCC 8739 / DSM 1576 /
           Crooks) GN=EcolC_2799 PE=3 SV=1
          Length = 94

 Score = 33.1 bits (74), Expect = 9.9
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -1

Query: 351 IHVCPTVIPTLRPHLRAQHLAMCGMGHLIETQ 256
           ++V P   P  RPH  A+HLA  G G +IE Q
Sbjct: 57  VYVAPAPAPAYRPHPYARHLASVGEGMVIEHQ 88


>tr|A7ZYA5|A7ZYA5_ECOHS Putative uncharacterized protein
           OS=Escherichia coli O9:H4 (strain HS) GN=EcHS_A0905 PE=4
           SV=1
          Length = 92

 Score = 33.1 bits (74), Expect = 9.9
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -1

Query: 351 IHVCPTVIPTLRPHLRAQHLAMCGMGHLIETQ 256
           ++V P   P  RPH  A+HLA  G G +IE Q
Sbjct: 55  VYVAPAPAPAYRPHPYARHLASVGEGMVIEHQ 86


>tr|B3IL00|B3IL00_ECOLX Putative uncharacterized protein
           OS=Escherichia coli E110019 GN=EcE110019_5163 PE=4 SV=1
          Length = 92

 Score = 33.1 bits (74), Expect = 9.9
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -1

Query: 351 IHVCPTVIPTLRPHLRAQHLAMCGMGHLIETQ 256
           ++V P   P  RPH  A+HLA  G G +IE Q
Sbjct: 55  VYVAPAPAPAYRPHPYARHLASVGEGMVIEHQ 86