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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914643
Clone id YMU001_000061_C09
Library
Length 434
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000061_C09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GTGGTGGCTCATGTGCTGGACGAGTGGAGAAGAGGTGCGAGGCGTGGTAAGATCATAGAG
ACTAGTTTAAGGTTCTATTTAAGACGAGTGGGAAGTGTCGAGCAGAGAACTGAAATGCGC
GTCTGGTCTACGCTCAACTTGGTGAGGTGCTGGGAGTTTGATGACTCACCTCCTCTGCTT
GCGTGCAATAAGAAACTTGATGCTCATTATATTCGAGCTCTACTGAATTTTGGTGGCCTT
TAGGTGCTGTCAGATGTGCTTTGTGGATCGTGCATGCCAACTGGGGGACGTTGAAGGGTC
GTCGAGAGTGGATGCTTCCCAGATAGTGTCTGTGTGTCTTTTCCCAGGACTAGTGCCTTG
TCCGCTTATCTTTGGCATTCTTTTTTTTTCGCTCTACACTATCTTAGAGGCTAGTCTCTG
GCTTATATTCGGCG
■■Homology search results ■■ -
sp_hit_id Q0D9C4
Definition sp|Q0D9C4|CATA2_ORYSJ Catalase isozyme B OS=Oryza sativa subsp. japonica
Align length 59
Score (bit) 30.8
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914643|Adiantum capillus-veneris mRNA, clone:
YMU001_000061_C09.
         (420 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q0D9C4|CATA2_ORYSJ Catalase isozyme B OS=Oryza sativa subsp. ...    31   2.2  
sp|A2YH64|CATA2_ORYSI Catalase isozyme B OS=Oryza sativa subsp. ...    31   2.2  
sp|Q8QZ73|POLN_MAYAB Non-structural polyprotein OS=Mayaro virus ...    30   2.9  
sp|P19520|YAV5_XANEU Uncharacterized 50 kDa avirulence protein i...    30   4.9  
sp|P25819|CATA2_ARATH Catalase-2 OS=Arabidopsis thaliana GN=CAT2...    30   4.9  
sp|Q01297|CATA1_RICCO Catalase isozyme 1 OS=Ricinus communis GN=...    30   4.9  
sp|Q8AVY8|DH12B_XENLA Estradiol 17-beta-dehydrogenase 12-B OS=Xe...    30   5.0  
sp|P30567|CATA2_GOSHI Catalase isozyme 2 OS=Gossypium hirsutum G...    29   6.4  
sp|Q28IU1|DHB12_XENTR Estradiol 17-beta-dehydrogenase 12 OS=Xeno...    29   6.6  
sp|Q10938|YWS2_CAEEL Putative zinc finger protein B0310.2 OS=Cae...    29   8.4  
sp|P17598|CATA1_GOSHI Catalase isozyme 1 OS=Gossypium hirsutum G...    29   8.4  
sp|P48350|CATA1_CUCPE Catalase isozyme 1 OS=Cucurbita pepo GN=CA...    29   8.4  
sp|Q88DU5|CARA_PSEPK Carbamoyl-phosphate synthase small chain OS...    29   8.4  

>sp|Q0D9C4|CATA2_ORYSJ Catalase isozyme B OS=Oryza sativa subsp.
           japonica GN=CATB PE=2 SV=1
          Length = 492

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = -2

Query: 350 RTRH*SWEKTHRHYLGSIHSRRPFNVPQLACTIHKAHLTAPKGHQNSVELEYNEHQVSY 174
           +TR  S+  T RH LG  +   P N P+  C  H  H      H  S+   + + +V+Y
Sbjct: 342 QTRIFSYADTQRHRLGPNYLMLPVNAPK--CAYHNNH------HDGSMNFMHRDEEVNY 392


>sp|A2YH64|CATA2_ORYSI Catalase isozyme B OS=Oryza sativa subsp.
           indica GN=CATB PE=2 SV=2
          Length = 492

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = -2

Query: 350 RTRH*SWEKTHRHYLGSIHSRRPFNVPQLACTIHKAHLTAPKGHQNSVELEYNEHQVSY 174
           +TR  S+  T RH LG  +   P N P+  C  H  H      H  S+   + + +V+Y
Sbjct: 342 QTRIFSYADTQRHRLGPNYLMLPVNAPK--CAYHNNH------HDGSMNFMHRDEEVNY 392


>sp|Q8QZ73|POLN_MAYAB Non-structural polyprotein OS=Mayaro virus
            (strain Brazil) PE=2 SV=2
          Length = 2436

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 7/93 (7%)
 Frame = -2

Query: 314  HYLGSIHSRRPFNVPQLACTIHKAH-------LTAPKGHQNSVELEYNEHQVSYCTQAEE 156
            HY G + +  P+N P +  T  +         LT  +G    ++L+Y  H+V     ++ 
Sbjct: 861  HYEGRMRTTNPYNKPVIIDTTGQTKPNREDIVLTCFRGWVKQLQLDYRGHEVMTAAASQG 920

Query: 155  VSHQXXXXXXXXXXXXXAFQFSARHFPLVLNRT 57
            ++ +              +  S+ H  ++L RT
Sbjct: 921  LTRKGVYAVRMKVNENPLYAQSSEHVNVLLTRT 953


>sp|P19520|YAV5_XANEU Uncharacterized 50 kDa avirulence protein in
           avrBs1 region OS=Xanthomonas euvesicatoria PE=4 SV=1
          Length = 445

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 358 KISGQGTSPGKRHTDTIWEASTLDDPSTSPS 266
           K+  +G +P KR  DTI   STL D   +P+
Sbjct: 140 KLGAEGKTPAKREVDTICNKSTLHDIVMTPA 170


>sp|P25819|CATA2_ARATH Catalase-2 OS=Arabidopsis thaliana GN=CAT2
           PE=1 SV=3
          Length = 492

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = -2

Query: 350 RTRH*SWEKTHRHYLGSIHSRRPFNVPQLACTIHKAHLTAPKGHQNSVELEYNEHQVSYC 171
           +TR  S+  T RH LG  + + P N P+  C  H  H      H+  +   + + +V+Y 
Sbjct: 342 QTRVFSYADTQRHRLGPNYLQLPVNAPK--CAHHNNH------HEGFMNFMHRDEEVNYF 393

Query: 170 -TQAEEVSH 147
            ++ ++V H
Sbjct: 394 PSRYDQVRH 402


>sp|Q01297|CATA1_RICCO Catalase isozyme 1 OS=Ricinus communis
           GN=CAT1 PE=2 SV=2
          Length = 492

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = -2

Query: 350 RTRH*SWEKTHRHYLGSIHSRRPFNVPQLACTIHKAHLTAPKGHQNSVELEYNEHQVSY 174
           +TR  S+  T RH LG  + + P N P+  C  H  H      H+  +   + + +V+Y
Sbjct: 342 QTRIFSYSDTQRHRLGPNYLQLPVNAPK--CAHHNNH------HEGFMNFMHRDEEVNY 392


>sp|Q8AVY8|DH12B_XENLA Estradiol 17-beta-dehydrogenase 12-B
           OS=Xenopus laevis GN=hsd17b12-B PE=2 SV=1
          Length = 318

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 217 WWPLGAVRCALWIVHANWGTLKGRREWML 303
           +W LG V    W + A W  L G R W+L
Sbjct: 15  FWYLGVVAATWWGLRAAWCLLNGARVWVL 43


>sp|P30567|CATA2_GOSHI Catalase isozyme 2 OS=Gossypium hirsutum
           GN=CAT2 PE=2 SV=1
          Length = 492

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = -2

Query: 350 RTRH*SWEKTHRHYLGSIHSRRPFNVPQLACTIHKAHLTAPKGHQNSVELEYNEHQVSY 174
           +TR  S+  T RH LG  + + P N P+  C  H  H      H+  +   + + +V+Y
Sbjct: 342 QTRIFSYSDTQRHRLGPNYLQLPANAPK--CAHHNNH------HEGFMNFMHRDEEVNY 392


>sp|Q28IU1|DHB12_XENTR Estradiol 17-beta-dehydrogenase 12 OS=Xenopus
           tropicalis GN=hsd17b12 PE=2 SV=1
          Length = 320

 Score = 29.3 bits (64), Expect = 6.6
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 217 WWPLGAVRCALWIVHANWGTLKGRREWML 303
           +W LG V    W + A W  L G R W+L
Sbjct: 17  FWYLGVVAAVWWGLRAAWCLLDGARVWVL 45


>sp|Q10938|YWS2_CAEEL Putative zinc finger protein B0310.2
           OS=Caenorhabditis elegans GN=B0310.2 PE=2 SV=1
          Length = 413

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = -2

Query: 374 KKKNAKDKRTRH*SWEKTHRHYLGSIHSRRPFN-VPQLACTIHKAHLTAPKGHQNSVEL 201
           KK N KD   RH         +LG I  + PF+ +PQL   +H   LT    H +++++
Sbjct: 343 KKFNRKDNLLRHKKTHSPTSAHLGPILPKNPFHGIPQLP-VLHNIALTQGFSHFHALKM 400
tr_hit_id A2R279
Definition tr|A2R279|A2R279_ASPNC Contig An13c0120, complete genome OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
Align length 38
Score (bit) 35.0
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914643|Adiantum capillus-veneris mRNA, clone:
YMU001_000061_C09.
         (420 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A2R279|A2R279_ASPNC Contig An13c0120, complete genome OS=Aspe...    35   1.9  
tr|Q4K5J8|Q4K5J8_PSEF5 ATP-dependent helicase HrpB OS=Pseudomona...    34   4.1  
tr|B8FKQ3|B8FKQ3_9DELT High-affinity nickel-transporter OS=Desul...    33   9.2  
tr|B8LSX0|B8LSX0_9EURO ATP dependent RNA helicase (Dbp7), putati...    33   9.2  

>tr|A2R279|A2R279_ASPNC Contig An13c0120, complete genome
           OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
           GN=An13g03870 PE=4 SV=1
          Length = 719

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 110 WSTL-NLVRCWEFDDSPPLLACNKKLDAHYIRALLNFG 220
           W +L N V C + D + PL  CN  L+ HY  AL+  G
Sbjct: 453 WDSLPNTVHCRDLDPAGPLFRCNVHLELHYATALIYMG 490


>tr|Q4K5J8|Q4K5J8_PSEF5 ATP-dependent helicase HrpB OS=Pseudomonas
           fluorescens (strain Pf-5 / ATCC BAA-477) GN=hrpB PE=4
           SV=1
          Length = 839

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = -2

Query: 305 GSIHSRRPFNVPQLACTIHKAHLTAPKGHQNSVELEYNEHQVSYCTQAEEV 153
           G IH+  P+ +PQ    +   HLT P G  +S+ L+Y+EH      + +E+
Sbjct: 716 GIIHNLLPWPLPQRLDELAPHHLTVPSG--SSIRLDYSEHPPILAVRLQEL 764


>tr|B8FKQ3|B8FKQ3_9DELT High-affinity nickel-transporter
           OS=Desulfatibacillum alkenivorans AK-01 GN=Dalk_2733
           PE=3 SV=1
          Length = 331

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +3

Query: 306 QIVSVCLFPGLVPCPLIFGILFFSLYTILEASLWL 410
           +I SV  F G+VPCP   G++F  L+ +    LWL
Sbjct: 231 RIFSVAFFMGMVPCP---GVVFVMLFCLSMGMLWL 262


>tr|B8LSX0|B8LSX0_9EURO ATP dependent RNA helicase (Dbp7), putative
           OS=Talaromyces stipitatus ATCC 10500 GN=TSTA_064350 PE=4
           SV=1
          Length = 802

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = -2

Query: 389 DSVERKKKNAKDKRTRH*SWEKTHRHYLGSIHSRRPFNVPQLACTIHKAHLTAPK 225
           D+ E++K NA DK ++H           G+I S   F+ P    TIHK H + P+
Sbjct: 496 DAEEKEKSNANDKTSQH-----------GTIGSVTAFSNPSNPVTIHKLHGSLPQ 539