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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914645
Clone id YMU001_000061_C11
Library
Length 402
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000061_C11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ACTACAAAACTAGTGTTGAATTGAGGTGAATGTGAGGTGCAAGTATCCAATTTTCATGAA
TCCATCCAACCCCTCACATAAGCTGTACTCTGCACTGTGCTGAAGTGAAATAAGTTTTAG
GACTGTGCACCGTGCTTGAAGTGTGGATCCTACCTGCTAGAGTGGGGTTCCACGCTCTCA
TCGTAATTTTTGAGCAATTCATTACAATTTACCTCAGCAATCCACACATAAAACCACACT
AAAAAATGCTGTCTCTCTTGAGGTTTGACTCTGAATCTACTAAGTTCTTGAAGACTCTTT
TTGCTATCTCTACATTTCCCCACTTTCTACAAGCATCCAGCAGAGCATGCCATACAACAG
AATCTAGAAAAGGTACAGATTTTCTCAGCATCATGTCTGCTG
■■Homology search results ■■ -
sp_hit_id Q9SJG6
Definition sp|Q9SJG6|PP200_ARATH Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidopsis thaliana
Align length 28
Score (bit) 40.4
E-value 0.003
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914645|Adiantum capillus-veneris mRNA, clone:
YMU001_000061_C11.
         (402 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9SJG6|PP200_ARATH Pentatricopeptide repeat-containing protei...    40   0.003
sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protei...    40   0.005
sp|Q9SN85|PP267_ARATH Pentatricopeptide repeat-containing protei...    37   0.030
sp|Q8S9M4|PP198_ARATH Pentatricopeptide repeat-containing protei...    37   0.040
sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protei...    35   0.088
sp|Q9ZVG8|PPR60_ARATH Pentatricopeptide repeat-containing protei...    35   0.12 
sp|Q680Z7|PPR24_ARATH Pentatricopeptide repeat-containing protei...    35   0.12 
sp|Q9FGR2|PP436_ARATH Pentatricopeptide repeat-containing protei...    35   0.15 
sp|Q9LS72|PP261_ARATH Pentatricopeptide repeat-containing protei...    35   0.15 
sp|Q9LT48|PP244_ARATH Pentatricopeptide repeat-containing protei...    35   0.15 
sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protei...    34   0.20 
sp|Q0WQW5|PPR85_ARATH Pentatricopeptide repeat-containing protei...    34   0.26 
sp|Q9CA54|PP122_ARATH Pentatricopeptide repeat-containing protei...    34   0.26 
sp|Q9LFI1|PP280_ARATH Pentatricopeptide repeat-containing protei...    33   0.34 
sp|Q9LJJ1|PP259_ARATH Putative pentatricopeptide repeat-containi...    33   0.34 
sp|O04590|PPR88_ARATH Pentatricopeptide repeat-containing protei...    33   0.57 
sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protei...    33   0.57 
sp|Q9CAY1|PP223_ARATH Putative pentatricopeptide repeat-containi...    33   0.57 
sp|Q9LXF2|PP385_ARATH Pentatricopeptide repeat-containing protei...    32   0.75 
sp|Q9STE1|PP333_ARATH Pentatricopeptide repeat-containing protei...    32   0.75 
sp|Q9C9H9|PP114_ARATH Pentatricopeptide repeat-containing protei...    32   0.75 
sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containi...    32   0.75 
sp|Q9C501|PPR70_ARATH Pentatricopeptide repeat-containing protei...    32   0.98 
sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protei...    32   0.98 
sp|Q9SVH0|PP329_ARATH Pentatricopeptide repeat-containing protei...    32   0.98 
sp|Q9LJI9|PP260_ARATH Pentatricopeptide repeat-containing protei...    32   0.98 
sp|Q9LSL8|PP446_ARATH Pentatricopeptide repeat-containing protei...    32   1.3  
sp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protei...    32   1.3  
sp|Q9FNN7|PP371_ARATH Pentatricopeptide repeat-containing protei...    31   1.7  
sp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protei...    31   1.7  

>sp|Q9SJG6|PP200_ARATH Pentatricopeptide repeat-containing protein
           At2g42920, chloroplastic OS=Arabidopsis thaliana
           GN=PCMP-E75 PE=2 SV=1
          Length = 559

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 18/28 (64%), Positives = 22/28 (78%)
 Frame = -3

Query: 364 DSVVWHALLDACRKWGNVEIAKRVFKNL 281
           D+V+W +LL ACRK GNVE+AKR  K L
Sbjct: 426 DTVIWSSLLSACRKIGNVEMAKRAAKCL 453


>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein
           At5g48910 OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
          Length = 646

 Score = 39.7 bits (91), Expect = 0.005
 Identities = 18/30 (60%), Positives = 21/30 (70%)
 Frame = -3

Query: 364 DSVVWHALLDACRKWGNVEIAKRVFKNLVD 275
           D V+W ALL ACR  GNVE+ KRV   L+D
Sbjct: 442 DDVIWKALLGACRMQGNVEMGKRVANILMD 471


>sp|Q9SN85|PP267_ARATH Pentatricopeptide repeat-containing protein
           At3g47530 OS=Arabidopsis thaliana GN=PCMP-H76 PE=2 SV=1
          Length = 591

 Score = 37.0 bits (84), Expect = 0.030
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = -3

Query: 364 DSVVWHALLDACRKWGNVEIAKRVFKNLVDSESNLKRDSI 245
           DS +W  LL ACR  G+VE+ +RV  +L++ ++    D +
Sbjct: 386 DSTIWRTLLGACRVHGDVELGERVISHLIELKAEEAGDYV 425


>sp|Q8S9M4|PP198_ARATH Pentatricopeptide repeat-containing protein
           At2g41080 OS=Arabidopsis thaliana GN=PCMP-H29 PE=2 SV=2
          Length = 650

 Score = 36.6 bits (83), Expect = 0.040
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = -3

Query: 400 ADMMLRKSVPFLDSVVWHALLDACRKWGNVEIAKRVFKNLVDSESN 263
           A+ ++R      D V+W  LL AC    N E+A+RVFK ++  + N
Sbjct: 434 AEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFKEILQIDPN 479


>sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein
           At2g22410, mitochondrial OS=Arabidopsis thaliana
           GN=PCMP-E28 PE=2 SV=1
          Length = 681

 Score = 35.4 bits (80), Expect = 0.088
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -3

Query: 400 ADMMLRKSVPFLDSVVWHALLDACRKWGNVEIAKRVFKNLVD 275
           AD ++       D+ VW ALL  CR  GNVE+ ++  K L++
Sbjct: 545 ADRLMESMPMEADAAVWGALLFGCRMHGNVELGEKAAKKLLE 586


>sp|Q9ZVG8|PPR60_ARATH Pentatricopeptide repeat-containing protein
           At1g26900, mitochondrial OS=Arabidopsis thaliana
           GN=PCMP-E54 PE=2 SV=1
          Length = 572

 Score = 35.0 bits (79), Expect = 0.12
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -3

Query: 364 DSVVWHALLDACRKWGNVEIAKRVFKNLVDSESNLKRDSIF*CG 233
           DS  W ALL ACR +GN ++ + V   L +       D+I   G
Sbjct: 498 DSTAWRALLAACRVYGNADLGESVMMRLAEMGETHPADAILLAG 541


>sp|Q680Z7|PPR24_ARATH Pentatricopeptide repeat-containing protein
           At1g09220, mitochondrial OS=Arabidopsis thaliana
           GN=PCMP-E25 PE=2 SV=1
          Length = 504

 Score = 35.0 bits (79), Expect = 0.12
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = -3

Query: 361 SVVWHALLDACRKWGNVEIAKRVFKNLVDSESNLKRDSIF*CGFMCG 221
           +VVW  LL AC  + + E+A+RV + L++ E +   D +      CG
Sbjct: 429 AVVWRMLLGACSVYDDAELAERVTRKLMELERSHGGDYVLMSNIFCG 475


>sp|Q9FGR2|PP436_ARATH Pentatricopeptide repeat-containing protein
           At5g59600 OS=Arabidopsis thaliana GN=PCMP-E1 PE=2 SV=1
          Length = 534

 Score = 34.7 bits (78), Expect = 0.15
 Identities = 16/32 (50%), Positives = 21/32 (65%)
 Frame = -3

Query: 364 DSVVWHALLDACRKWGNVEIAKRVFKNLVDSE 269
           D  VW ALL ACR  GN+E+A+   K+L + E
Sbjct: 456 DLFVWGALLAACRNHGNMELARIAAKHLAELE 487


>sp|Q9LS72|PP261_ARATH Pentatricopeptide repeat-containing protein
           At3g29230 OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1
          Length = 600

 Score = 34.7 bits (78), Expect = 0.15
 Identities = 16/27 (59%), Positives = 18/27 (66%)
 Frame = -3

Query: 358 VVWHALLDACRKWGNVEIAKRVFKNLV 278
           V+W ALL ACR    V+IAK V  NLV
Sbjct: 485 VIWGALLGACRMHNEVDIAKEVLDNLV 511


>sp|Q9LT48|PP244_ARATH Pentatricopeptide repeat-containing protein
           At3g20730 OS=Arabidopsis thaliana GN=PCMP-E94 PE=2 SV=1
          Length = 565

 Score = 34.7 bits (78), Expect = 0.15
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -3

Query: 385 RKSVPFLDSVVWHALLDACRKWGNVEIAKRVFKNLVDSE 269
           ++ +  L S  W A LDACR+ GNV+++K     L+  E
Sbjct: 481 KEGIVSLSSSTWGAFLDACRRHGNVQLSKVAATQLLSME 519
tr_hit_id A7PJW3
Definition tr|A7PJW3|A7PJW3_VITVI Chromosome chr12 scaffold_18, whole genome shotgun sequence OS=Vitis vinifera
Align length 58
Score (bit) 48.9
E-value 0.0001
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914645|Adiantum capillus-veneris mRNA, clone:
YMU001_000061_C11.
         (402 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7PJW3|A7PJW3_VITVI Chromosome chr12 scaffold_18, whole genom...    49   1e-04
tr|A7PDY1|A7PDY1_VITVI Chromosome chr11 scaffold_13, whole genom...    42   0.020
tr|A7R4G1|A7R4G1_VITVI Chromosome undetermined scaffold_682, who...    41   0.034
tr|A7R352|A7R352_VITVI Chromosome undetermined scaffold_484, who...    41   0.034
tr|A7R0U6|A7R0U6_VITVI Chromosome undetermined scaffold_324, who...    41   0.034
tr|A5BVF2|A5BVF2_VITVI Putative uncharacterized protein OS=Vitis...    41   0.034
tr|A7R380|A7R380_VITVI Chromosome undetermined scaffold_490, who...    40   0.044
tr|A7PF29|A7PF29_VITVI Chromosome chr11 scaffold_13, whole genom...    40   0.044
tr|B4FZF5|B4FZF5_MAIZE Putative uncharacterized protein OS=Zea m...    40   0.075
tr|A7QDF7|A7QDF7_VITVI Chromosome chr10 scaffold_81, whole genom...    40   0.075
tr|A5AXT8|A5AXT8_VITVI Putative uncharacterized protein OS=Vitis...    39   0.098
tr|A7QW05|A7QW05_VITVI Chromosome chr2 scaffold_196, whole genom...    39   0.13 
tr|A7NWE8|A7NWE8_VITVI Chromosome chr5 scaffold_2, whole genome ...    39   0.13 
tr|A5BZ17|A5BZ17_VITVI Putative uncharacterized protein OS=Vitis...    39   0.13 
tr|A7QRN2|A7QRN2_VITVI Chromosome undetermined scaffold_151, who...    39   0.17 
tr|Q87NW4|Q87NW4_VIBPA Putative uncharacterized protein VP1754 O...    38   0.22 
tr|A6AXV3|A6AXV3_VIBPA Cyclic diguanylate phosphodiesterase (EAL...    38   0.22 
tr|A7QF00|A7QF00_VITVI Chromosome chr16 scaffold_86, whole genom...    38   0.22 
tr|A7PRQ2|A7PRQ2_VITVI Chromosome chr14 scaffold_27, whole genom...    38   0.22 
tr|A5BN40|A5BN40_VITVI Putative uncharacterized protein OS=Vitis...    38   0.22 
tr|A5B815|A5B815_VITVI Putative uncharacterized protein OS=Vitis...    38   0.22 
tr|Q0IZR0|Q0IZR0_ORYSJ Os09g0555400 protein OS=Oryza sativa subs...    38   0.28 
tr|A7PXY9|A7PXY9_VITVI Chromosome chr15 scaffold_37, whole genom...    38   0.28 
tr|A7PX41|A7PX41_VITVI Chromosome chr12 scaffold_36, whole genom...    38   0.28 
tr|A7PMZ7|A7PMZ7_VITVI Chromosome chr14 scaffold_21, whole genom...    38   0.28 
tr|A5BWE3|A5BWE3_VITVI Putative uncharacterized protein OS=Vitis...    38   0.28 
tr|A5B5D5|A5B5D5_VITVI Putative uncharacterized protein OS=Vitis...    38   0.28 
tr|A2Z3X5|A2Z3X5_ORYSI Putative uncharacterized protein OS=Oryza...    38   0.28 
tr|A7NVQ5|A7NVQ5_VITVI Chromosome chr18 scaffold_1, whole genome...    37   0.37 
tr|A5AJY4|A5AJY4_VITVI Putative uncharacterized protein OS=Vitis...    37   0.37 

>tr|A7PJW3|A7PJW3_VITVI Chromosome chr12 scaffold_18, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00018905001
           PE=4 SV=1
          Length = 497

 Score = 48.9 bits (115), Expect = 1e-04
 Identities = 25/58 (43%), Positives = 38/58 (65%)
 Frame = -3

Query: 400 ADMMLRKSVPFLDSVVWHALLDACRKWGNVEIAKRVFKNLVDSESNLKRDSIF*CGFM 227
           A+ ++R      D+++W +LL ACRK GNVE+AKR  K++VD + N   DS   CG++
Sbjct: 377 AEELIRNMPVNPDAIIWSSLLSACRKHGNVELAKRAAKHIVDLDGN---DS---CGYV 428


>tr|A7PDY1|A7PDY1_VITVI Chromosome chr11 scaffold_13, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00016456001
           PE=4 SV=1
          Length = 624

 Score = 41.6 bits (96), Expect = 0.020
 Identities = 18/34 (52%), Positives = 25/34 (73%)
 Frame = -3

Query: 364 DSVVWHALLDACRKWGNVEIAKRVFKNLVDSESN 263
           D+V+W ALL ACR +GN E+ +RV   LV+S+ N
Sbjct: 420 DNVIWGALLGACRVYGNAEMGQRVGSLLVESDQN 453


>tr|A7R4G1|A7R4G1_VITVI Chromosome undetermined scaffold_682, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00004379001 PE=4 SV=1
          Length = 573

 Score = 40.8 bits (94), Expect = 0.034
 Identities = 19/32 (59%), Positives = 23/32 (71%)
 Frame = -3

Query: 364 DSVVWHALLDACRKWGNVEIAKRVFKNLVDSE 269
           D VVW ALL ACR  GNVEI K++ K L++ E
Sbjct: 446 DVVVWGALLGACRIHGNVEIGKQILKQLLELE 477


>tr|A7R352|A7R352_VITVI Chromosome undetermined scaffold_484, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00013464001 PE=4 SV=1
          Length = 573

 Score = 40.8 bits (94), Expect = 0.034
 Identities = 19/32 (59%), Positives = 23/32 (71%)
 Frame = -3

Query: 364 DSVVWHALLDACRKWGNVEIAKRVFKNLVDSE 269
           D VVW ALL ACR  GNVEI K++ K L++ E
Sbjct: 446 DVVVWGALLGACRIHGNVEIGKQILKQLLELE 477


>tr|A7R0U6|A7R0U6_VITVI Chromosome undetermined scaffold_324, whole
           genome shotgun sequence (Fragment) OS=Vitis vinifera
           GN=GSVIVT00011626001 PE=4 SV=1
          Length = 718

 Score = 40.8 bits (94), Expect = 0.034
 Identities = 19/39 (48%), Positives = 24/39 (61%)
 Frame = -3

Query: 391 MLRKSVPFLDSVVWHALLDACRKWGNVEIAKRVFKNLVD 275
           ML   V   D V+W  LL ACR  G+VE+AKRV   ++D
Sbjct: 504 MLINQVNISDVVIWRTLLSACRIHGDVEMAKRVMNRVID 542


>tr|A5BVF2|A5BVF2_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_027628 PE=4 SV=1
          Length = 688

 Score = 40.8 bits (94), Expect = 0.034
 Identities = 19/32 (59%), Positives = 23/32 (71%)
 Frame = -3

Query: 364 DSVVWHALLDACRKWGNVEIAKRVFKNLVDSE 269
           D VVW ALL ACR  GNVEI K++ K L++ E
Sbjct: 561 DVVVWGALLGACRIHGNVEIGKQILKQLLELE 592


>tr|A7R380|A7R380_VITVI Chromosome undetermined scaffold_490, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00013497001 PE=4 SV=1
          Length = 640

 Score = 40.4 bits (93), Expect = 0.044
 Identities = 20/41 (48%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
 Frame = -3

Query: 379 SVPFL-DSVVWHALLDACRKWGNVEIAKRVFKNLVDSESNL 260
           S+PF  D++VW ALL ACR + NVEIA+    NL++ E ++
Sbjct: 430 SMPFAPDAIVWRALLGACRIYKNVEIAEEATVNLLELEPHV 470


>tr|A7PF29|A7PF29_VITVI Chromosome chr11 scaffold_13, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00016885001
           PE=4 SV=1
          Length = 451

 Score = 40.4 bits (93), Expect = 0.044
 Identities = 16/30 (53%), Positives = 22/30 (73%)
 Frame = -3

Query: 364 DSVVWHALLDACRKWGNVEIAKRVFKNLVD 275
           D+ VW A+L ACR +GN+E+  RV+K L D
Sbjct: 335 DANVWGAMLGACRTYGNIEVGNRVWKKLAD 364


>tr|B4FZF5|B4FZF5_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 570

 Score = 39.7 bits (91), Expect = 0.075
 Identities = 19/32 (59%), Positives = 23/32 (71%)
 Frame = -3

Query: 364 DSVVWHALLDACRKWGNVEIAKRVFKNLVDSE 269
           D VVW ALL ACR  GNV+I K+V K L++ E
Sbjct: 445 DVVVWGALLGACRIHGNVKIGKQVIKQLLELE 476


>tr|A7QDF7|A7QDF7_VITVI Chromosome chr10 scaffold_81, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00035822001
           PE=4 SV=1
          Length = 506

 Score = 39.7 bits (91), Expect = 0.075
 Identities = 19/42 (45%), Positives = 29/42 (69%)
 Frame = -3

Query: 400 ADMMLRKSVPFLDSVVWHALLDACRKWGNVEIAKRVFKNLVD 275
           A+ +++K      SVVW +LL ACR  GNVE+A+RV + L++
Sbjct: 397 AEELVQKMPQKEASVVWESLLGACRNHGNVELAERVAQKLLE 438