BP914646 |
Clone id |
YMU001_000061_C12 |
Library |
YMU01 |
Length |
635 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000061_C12. |
Accession |
BP914646 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL1926Contig1 |
Sequence |
AATTCGCGGCCGCGAATTTACAAAGTAAAGATGCACCCAACATGCATCATATATTATGTT GAGTAATTGAATCCTCAAAATTACAATACAGTGTCGATGAGCCATGAAAAAATGTCATAT GAATTGTCATATGACTGCCTACAACAGAGTAATAGAGCTCCTACAAGGGATTAGTCTCTT AGTCTGTTACTACCTATTACCTTATCCTGCCAGATAGGCTGGCCTTTCTCCAATGGCGCA TTGACACAAGCTACACCAAACAAAAGAGCATTTGCAATTTACACATTAAGGGTCAATGTC GATAAACATACTTCTTGAAATCATCTCTTACCACAACCTCTGTATTCATCATCGCCTTCG CCATGTTATTCGGCCTTATCTCGAGAACTTGGCCATTTTTCCGCACCCTTAATTTTGTCG CGATGCAATGTAGTCAGCGAGGGCTAGTAATGGGGCAGCCTTGGCTTGATCAAACTTGGA GAGCTCTTTGCGGGCCTTGCGGTTGAGATCATCTGCATAGAGACGCGCCTTGTCGAGCCC CATTAGCTTGGGAAAGGTGGCCTTATCAGAGATGAGGTCTTTCCCTGCAGTCTTTCCAAG CTCTGCAGATGACTTGGTCACATCCAAGATATCAT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q42698 |
Definition |
sp|Q42698|GGPPS_CATRO Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Catharanthus roseus |
Align length |
74 |
Score (bit) |
106.0 |
E-value |
8.0e-23 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP914646|Adiantum capillus-veneris mRNA, clone: YMU001_000061_C12. (617 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q42698|GGPPS_CATRO Geranylgeranyl pyrophosphate synthetase, c... 106 8e-23 sp|P34802|GGPP1_ARATH Geranylgeranyl pyrophosphate synthetase 1,... 105 1e-22 sp|Q43133|GGPPS_SINAL Geranylgeranyl pyrophosphate synthetase, c... 105 2e-22 sp|P80042|GGPPS_CAPAN Geranylgeranyl pyrophosphate synthetase, c... 105 2e-22 sp|Q94ID7|GGPPS_HEVBR Geranylgeranyl pyrophosphate synthetase, c... 105 2e-22 sp|O22043|GGPP6_ARATH Geranylgeranyl pyrophosphate synthetase 6,... 97 5e-20 sp|Q9LUD9|GGPP3_ARATH Geranylgeranyl pyrophosphate synthetase 3,... 90 1e-17 sp|Q9SLG2|GGPP4_ARATH Geranylgeranyl pyrophosphate synthetase 4 ... 82 3e-15 sp|O04046|GGPP2_ARATH Geranylgeranyl pyrophosphate synthetase 2 ... 79 1e-14 sp|P48368|CRTE_CYAPA Geranylgeranyl pyrophosphate synthetase hom... 64 6e-10 sp|P45204|ISPA_HAEIN Geranyltranstransferase OS=Haemophilus infl... 59 2e-08 sp|P22939|ISPA_ECOLI Geranyltranstransferase OS=Escherichia coli... 54 8e-07 sp|Q45220|ISPA_BRAJA Probable geranyltranstransferase OS=Bradyrh... 50 1e-05 sp|P55539|ISPA_RHISN Probable geranyltranstransferase OS=Rhizobi... 45 3e-04 sp|O66126|ISPA_MICLU Geranyltranstransferase OS=Micrococcus lute... 41 0.004 sp|P54383|ISPA_BACSU Geranyltranstransferase OS=Bacillus subtili... 39 0.028 sp|P72580|PREA_SYNY3 Prenyl transferase OS=Synechocystis sp. (st... 37 0.062 sp|Q1XDL8|PREA_PORYE Prenyl transferase OS=Porphyra yezoensis GN... 37 0.062 sp|Q08291|ISPA_BACST Geranyltranstransferase OS=Bacillus stearot... 36 0.14 sp|P55785|HEPS2_BACST Heptaprenyl diphosphate synthase component... 36 0.14 sp|P31114|HEPS2_BACSU Heptaprenyl diphosphate synthase component... 34 0.69 sp|Q9BYW1|GTR11_HUMAN Solute carrier family 2, facilitated gluco... 33 0.90 sp|P17060|CRTE_RHOCA Geranylgeranyl pyrophosphate synthetase OS=... 33 0.90 sp|Q9TLS1|PREA_CYACA Prenyl transferase OS=Cyanidium caldarium G... 32 3.4 sp|P57537|ISPA_BUCAI Geranyltranstransferase OS=Buchnera aphidic... 32 3.4 sp|P31171|PREA_CYAPA Prenyl transferase OS=Cyanophora paradoxa G... 31 4.5 sp|A0PPW9|DNLJ_MYCUA DNA ligase OS=Mycobacterium ulcerans (strai... 31 4.5 sp|A0RNT3|HEM3_CAMFF Porphobilinogen deaminase OS=Campylobacter ... 30 7.6 sp|Q13571|LAPM5_HUMAN Lysosomal-associated transmembrane protein... 30 9.9 sp|P44916|ISPB_HAEIN Octaprenyl-diphosphate synthase OS=Haemophi... 30 9.9
>sp|Q42698|GGPPS_CATRO Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1 Length = 357
Score = 106 bits (265), Expect = 8e-23 Identities = 50/74 (67%), Positives = 66/74 (89%) Frame = -3
Query: 615 DILDVTKSSAELGKTAGKDLISDKATFPKLMGLDKARLYADDLNRKARKELSKFDQAKAA 436 DILDVTKSS ELGKTAGKDL++DK T+PKL+G+DK+R +A+ LNR+A+++L++FD KAA Sbjct: 284 DILDVTKSSQELGKTAGKDLVADKVTYPKLLGIDKSREFAEKLNREAQEQLAEFDPEKAA 343
Query: 435 PLLALADYIASRQN 394 PL+ALA+YIA R N Sbjct: 344 PLIALANYIAYRDN 357
>sp|P34802|GGPP1_ARATH Geranylgeranyl pyrophosphate synthetase 1, chloroplastic OS=Arabidopsis thaliana GN=GGPS1 PE=2 SV=2 Length = 371
Score = 105 bits (263), Expect = 1e-22 Identities = 53/74 (71%), Positives = 63/74 (85%) Frame = -3
Query: 615 DILDVTKSSAELGKTAGKDLISDKATFPKLMGLDKARLYADDLNRKARKELSKFDQAKAA 436 DILDVTKSS ELGKTAGKDLI+DK T+PK+MGL+K+R +A+ LNR+AR +L FD K A Sbjct: 298 DILDVTKSSKELGKTAGKDLIADKLTYPKIMGLEKSREFAEKLNREARDQLLGFDSDKVA 357
Query: 435 PLLALADYIASRQN 394 PLLALA+YIA RQN Sbjct: 358 PLLALANYIAYRQN 371
>sp|Q43133|GGPPS_SINAL Geranylgeranyl pyrophosphate synthetase, chloroplastic/chromoplastic OS=Sinapis alba GN=GGPS1 PE=1 SV=1 Length = 366
Score = 105 bits (262), Expect = 2e-22 Identities = 53/74 (71%), Positives = 63/74 (85%) Frame = -3
Query: 615 DILDVTKSSAELGKTAGKDLISDKATFPKLMGLDKARLYADDLNRKARKELSKFDQAKAA 436 DILDVTKSS ELGKTAGKDLI+DK T+PKLMGL+K+R +A+ LN +AR +L FD K A Sbjct: 293 DILDVTKSSQELGKTAGKDLIADKLTYPKLMGLEKSREFAEKLNTEARDQLLGFDSDKVA 352
Query: 435 PLLALADYIASRQN 394 PLLALA+YIA+RQN Sbjct: 353 PLLALANYIANRQN 366
>sp|P80042|GGPPS_CAPAN Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Capsicum annuum GN=GGPS1 PE=3 SV=1 Length = 369
Score = 105 bits (262), Expect = 2e-22 Identities = 51/74 (68%), Positives = 63/74 (85%) Frame = -3
Query: 615 DILDVTKSSAELGKTAGKDLISDKATFPKLMGLDKARLYADDLNRKARKELSKFDQAKAA 436 DILDVTKSS ELGKTAGKDL+ DK T+PKL+GL+KA+ +A +LNR+A+++L FD KAA Sbjct: 296 DILDVTKSSEELGKTAGKDLVVDKTTYPKLLGLEKAKEFAAELNREAKQQLEGFDSRKAA 355
Query: 435 PLLALADYIASRQN 394 PL+ALADYIA R N Sbjct: 356 PLIALADYIAYRDN 369
>sp|Q94ID7|GGPPS_HEVBR Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Hevea brasiliensis GN=GGPS PE=1 SV=1 Length = 370
Score = 105 bits (261), Expect = 2e-22 Identities = 49/74 (66%), Positives = 66/74 (89%) Frame = -3
Query: 615 DILDVTKSSAELGKTAGKDLISDKATFPKLMGLDKARLYADDLNRKARKELSKFDQAKAA 436 DILDVTKSS ELGKTAGKDL++DK T+PKL+G++K+R +A+ LN++A+++L+ FD KAA Sbjct: 297 DILDVTKSSQELGKTAGKDLVADKVTYPKLLGIEKSREFAEKLNKEAQEQLAGFDPEKAA 356
Query: 435 PLLALADYIASRQN 394 PL+ALA+YIA RQN Sbjct: 357 PLIALANYIAHRQN 370
>sp|O22043|GGPP6_ARATH Geranylgeranyl pyrophosphate synthetase 6, mitochondrial OS=Arabidopsis thaliana GN=GGPP6 PE=2 SV=2 Length = 336
Score = 97.4 bits (241), Expect = 5e-20 Identities = 48/74 (64%), Positives = 57/74 (77%) Frame = -3
Query: 615 DILDVTKSSAELGKTAGKDLISDKATFPKLMGLDKARLYADDLNRKARKELSKFDQAKAA 436 D+LD TKSS ELGKTAGKDLI+ K T+PK+MG+D AR YA LNR+A++ L FD K Sbjct: 263 DVLDETKSSEELGKTAGKDLITGKLTYPKVMGVDNAREYAKRLNREAQEHLQGFDSDKVV 322
Query: 435 PLLALADYIASRQN 394 PLL+LADYI RQN Sbjct: 323 PLLSLADYIVKRQN 336
>sp|Q9LUD9|GGPP3_ARATH Geranylgeranyl pyrophosphate synthetase 3, chloroplastic OS=Arabidopsis thaliana GN=GGPP3 PE=2 SV=1 Length = 360
Score = 89.7 bits (221), Expect = 1e-17 Identities = 43/74 (58%), Positives = 60/74 (81%) Frame = -3
Query: 615 DILDVTKSSAELGKTAGKDLISDKATFPKLMGLDKARLYADDLNRKARKELSKFDQAKAA 436 DILDVTKS+ ELGKTAGKD+++ K T+P+L+GL++++ A+ L R+A ++L FD +KAA Sbjct: 287 DILDVTKSTEELGKTAGKDVMAGKLTYPRLIGLERSKEVAEKLRREAEEQLLGFDPSKAA 346
Query: 435 PLLALADYIASRQN 394 PL+ALA YIA R N Sbjct: 347 PLVALASYIACRHN 360
>sp|Q9SLG2|GGPP4_ARATH Geranylgeranyl pyrophosphate synthetase 4 OS=Arabidopsis thaliana GN=GGPP4 PE=2 SV=1 Length = 372
Score = 81.6 bits (200), Expect = 3e-15 Identities = 38/74 (51%), Positives = 55/74 (74%) Frame = -3
Query: 615 DILDVTKSSAELGKTAGKDLISDKATFPKLMGLDKARLYADDLNRKARKELSKFDQAKAA 436 DILD TKSS ELGKTAGKD ++ K T+PK++G++K++ + + L R AR+ L FD K Sbjct: 299 DILDETKSSEELGKTAGKDKVAGKLTYPKVIGVEKSKEFVEKLKRDAREHLQGFDSDKVK 358
Query: 435 PLLALADYIASRQN 394 PL+AL ++IA+R + Sbjct: 359 PLIALTNFIANRNH 372
>sp|O04046|GGPP2_ARATH Geranylgeranyl pyrophosphate synthetase 2 OS=Arabidopsis thaliana GN=GGPP2 PE=2 SV=2 Length = 376
Score = 79.3 bits (194), Expect = 1e-14 Identities = 39/72 (54%), Positives = 52/72 (72%) Frame = -3
Query: 615 DILDVTKSSAELGKTAGKDLISDKATFPKLMGLDKARLYADDLNRKARKELSKFDQAKAA 436 DILD TKSS ELGKTAGKD ++ K T+PKL+GL+K++ + L + AR+ L F K A Sbjct: 303 DILDETKSSEELGKTAGKDQLAGKLTYPKLIGLEKSKEFVKRLTKDARQHLQGFSSEKVA 362
Query: 435 PLLALADYIASR 400 PL+AL +IA+R Sbjct: 363 PLVALTTFIANR 374
>sp|P48368|CRTE_CYAPA Geranylgeranyl pyrophosphate synthetase homolog OS=Cyanophora paradoxa GN=crtE PE=3 SV=1 Length = 300
Score = 63.9 bits (154), Expect = 6e-10 Identities = 31/74 (41%), Positives = 51/74 (68%) Frame = -3
Query: 615 DILDVTKSSAELGKTAGKDLISDKATFPKLMGLDKARLYADDLNRKARKELSKFDQAKAA 436 D+LD+ + +LGK+ GKDL + KAT+P G++++ A+ L +A++E+ FD KA Sbjct: 228 DVLDIISTEEKLGKSIGKDLKTQKATYPSFWGVEESIKQAELLVEEAKEEILYFDN-KAI 286
Query: 435 PLLALADYIASRQN 394 PL+A+AD+I +R N Sbjct: 287 PLIAIADFIVNRNN 300
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9RDQ7 |
Definition |
tr|A9RDQ7|A9RDQ7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
74 |
Score (bit) |
114.0 |
E-value |
6.0e-24 |
Report |
|