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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914647
Clone id YMU001_000061_D01
Library
Length 528
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000061_D01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AAAGAAGAAGATGAACCGTTCTGCAAGCCCCGACGCAGTGCATCCGGAATATAGCAATGA
GCCGAACTCAAAGTGTTGAGACTCAAAAGTTCTAGAGAGCGTCTCTAGAGGCTCCCATAC
CATAGATGTTGACAGAAAAATATTTGCACAATCCAAACACCATGTCCATAGAGTTTCATT
ATTAGAGACTTCATGTGAAATTATGGAGTTTGTTACAAACAACACTAGAAATACTTACAA
TTAGCAGTACATCGCTTGCGATCCAAGTGGTTGATCCGTAGTTGAGAAGCTTTGTAGATG
TGATGTATCTTCACTTGCTTTCTTCTATATGCCGCCTGCTTCATTTTCAATATGCGACCC
TTTCAATGATGGGAGTTTAGTCCGATAAATGGAAAAGAGACTTTGTAGGCTCCCTTTGTG
CTTGGCCGCATTGTCACCCACATGCATGTCACAAATCTTCTGGTTACCTAATGTCCTTTG
TCATCTTTCTCGTTAATGCAGCAAAATGAGTCTACCCTTGAACGAGGT
■■Homology search results ■■ -
sp_hit_id A0LXZ7
Definition sp|A0LXZ7|MUTS_GRAFK DNA mismatch repair protein mutS OS=Gramella forsetii (strain KT0803)
Align length 58
Score (bit) 30.8
E-value 4.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914647|Adiantum capillus-veneris mRNA, clone:
YMU001_000061_D01.
         (528 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A0LXZ7|MUTS_GRAFK DNA mismatch repair protein mutS OS=Gramell...    31   4.2  
sp|Q60894|OLF12_MOUSE Olfactory receptor 12 OS=Mus musculus GN=O...    30   7.2  

>sp|A0LXZ7|MUTS_GRAFK DNA mismatch repair protein mutS OS=Gramella
           forsetii (strain KT0803) GN=mutS PE=3 SV=1
          Length = 871

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 20/58 (34%), Positives = 28/58 (48%)
 Frame = -1

Query: 438 GDNAAKHKGSLQSLFSIYRTKLPSLKGSHIENEAGGI*KKASEDTSHLQSFSTTDQPL 265
           G + AK  G  Q +       L  L+ SH   ++G + KK++ED   L SF   D PL
Sbjct: 777 GIHVAKMAGMPQMVLHRANKILAKLEASHSMEDSGAVLKKSAEDEMQL-SFFNLDDPL 833


>sp|Q60894|OLF12_MOUSE Olfactory receptor 12 OS=Mus musculus
           GN=Olfr12 PE=2 SV=2
          Length = 333

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = -1

Query: 171 LWTWCLDCANIFLSTSMVWEPLETLSRTFESQHFEFGSLLYSGCTASGLAERFIF 7
           L T+C+ C N  + TS+ ++     S   +  + +   LL   C ++ L E F+F
Sbjct: 153 LGTFCVGCLNSIVQTSLTFQLPFCSSNRIDHFYCDVPPLLQLACASTALNELFLF 207
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914647|Adiantum capillus-veneris mRNA, clone:
YMU001_000061_D01.
         (528 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******